TCONS_00061047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061047
Unique NameTCONS_00061047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061047 ID=TCONS_00061047|Name=TCONS_00061047|organism=Clytia hemisphaerica|type=transcript|length=756bp
GTATGGACTCCAAACCATCATTACGAACAAGATAAATTTGTCAGCTTGAG
TTTCGAAACTATATCGTCAATCGGACCAAATTGTGCAGTTATCCATTACA
AACCAGAAATGGAGACAGCGAAAGTACTCTCAACTGATATGTATCTTTGT
GATTCTGGTGGCCAATATTTGGATGGCACAACAGACGTTACAAGGACCAT
ACACTTAGGTACTCCAACAGACCACCAAAAGGAAACGTATACGCGTGTTT
TGAAAGGCCACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGGAACAAGA
GGGCACATATTAGATGTTCTAGCCCGTGCACCATTATGGGAGATTGGACT
CGAGTATGCGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTAAATGTTC
ACGAAGCATAATTATGGTAATAGAGGTTACTTAGGATTCGAAGTTGTCAC
AATGgcaCCCCTTTACAAAGAATTGATTGTTCCCCAACTTTTATCAACAG
AAGAGGTTGATTGGATAAATGACTATCACACTGAAGTATTTGAGAAAGTG
GGAAGTTATTTGAGAGACAATAATAAAGCAAATGTTGTTGATTGGCTCAA
AAATGCCACATCACCTTTGGGCTAAAAGTATTGAAAATCTACTTTTAGTG
AATTTTAACGgtttttttgtgcaattttttaatttttacgtttattaaat
tttaatgTCAACTTTAAGATAAGTTTTTAGTCATAGAAATTAGCAAAATA
TATAAT
Run BLAST on NCBI

transcript from alignment at scaffold_354:281470..289034+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061047 ID=TCONS_00061047|Name=TCONS_00061047|organism=Clytia hemisphaerica|type=transcript|length=7565bp|location=Sequence derived from alignment at scaffold_354:281470..289034+ (Clytia hemisphaerica)
GTATGGACTCCAAACCATCATTAGCGAGTTATGTGTTTTCTTTAGCGGAG
ACGGATGTTTTTCTATAGCAACAAAatacataagaacataatgcttcAAT
TGTTAAAAtatagaacaagttaagaacattttcaggctttatgaaattgt
tcaaaaataCTCAAGGAATtgtaaaattaagaacattttaagaatattaa
aaacaagaaggcgaagtttttatttgacaaagGACGACAACACTCCTACA
GTTCTCGATTATGCAATTTCgttttttatccaaaaatgaaaatatatata
actATTATTTTTCTACCTGACAATTTATGCAGCGAACAAGATAAATTTGT
CAGCTTGAGTTTCGAAACTATATCGTCAATCGGACCAAATTGTGCAGTTA
TCCATTACAAGTAAGCAATAATTTTATAACAAGATATGGTTCGGTATACA
CCTATTGAGACAGAAGTTCAAATCCAATTCTCTAACTGAACATCCCAATA
AAGTAGAGAGGTAATTTTCAAGAACTGTTACCTTTGTCGTCAATAACCCC
TCCCCTCTTCTCTCCGGTAAAAAAAGAGCATCCTCCTAAAAGATTTTGAG
CAGAGTGATATATCCAttagttttttggtttttacatggctattattttt
atttcaaatatacAAGGCGCATAGTTCACAAATCAtccaaaattttaata
tttatttcttGCTCAATGAATAAAACTACAATTTGCTGTTTTTAGACCAG
AAATGGAGACAGCGAAAGTACTCTCAACTGATATGTATCTTTGTGATTCT
GGTGGCCAATATTTGTAAGTAATTAGGTTTCAGGGTAGAGGTTGGTACTA
AACCAAAACTACCTCGAACCAAAGTGAATGCTGTTCAAAACTCGAGCGAA
GTATGTGAACaattcaaaaaatagttttctaATCTCTTAAGTCAGTTTAT
TACAAGTATTTTGCTTGctttttgtttgtaattcttGAAGAAAATCGAAA
AGTCTTGTTTCAGTCAAATagggccctgagacgtctcagatgctGTTTTC
AAAGTGTAGATCAGGAAGTCTCGGACGAATAGTGCCGAATCCGTGCTACA
CTCGTTTCATCTCAGACACATACCATCATAATATGATAATCTTTGAAGAG
TGTTAAAATTACGTATATATGTTGTTTTTACCAGGGATGGCACAACAGAC
GTTACAAGGACCATACACTTAGGTACTCCAACAGACCACCAAAAGgttct
ctttctttcttttcgcAAACATTTAAAATTTGTCTAAAATATATTATTGA
TGGAACTTGAATGATTATGTGAAGTCGAGATCCTAACCGAtccaaatttt
atttaatttgatagAATTTCAGTTGCCATGCCCCACCCCTCGTTAACATC
TTCTGAAAAACCGAAAGGGGTTCGATCATTACAATTGGTCACTGAGGTTT
GGGTCGGACTGTTTTTACCGCACTCGATtacttgaattttcaaaaagtga
caaGATTATGACTGGGAACCAGATTAAATAAAGAGCGTCATAATTTAATG
TTTTAGGAAACGTATACGCGTGTTTTGAAAGGCCACATCCAGCTAGCCCG
TGCTGTATTTCCTAAAGGAACAAGAGGGCACATATTAGATGTTCTAGCCC
GTGCACCATTATGGGAGATTGGACTCGAGTATGCGCATGGGACTGGGCAT
GGAGTTGGTGCTTTCTTAAATGTTCACGAAGGTAACCCTATGAGAGAACT
ATTTTATCATCTACAGTAAGTCTGTTCCAACAAAGacTGTCTGTAAATTT
TGATACATTGCTCTTGGTGTTCAGATTGATATCTTTCTTAGATTGAAAGT
TACGATCATTGAAAATGAATCTATTtgccaattttcgccattttttacCT
ACTTTGGAGGGATGTATCTTTTTACCTATTGCATTAGAATgatagaaatt
tgttctttaaAAATCTGTGTATTGCCATTTACAGGACCCATCGGAATCAG
TCCGAAGAACAGCGAGGATCCACCCTTAGAATCTGGCATGTTTTTATCTG
ACGAACCTGGTTATTATGAGGACGGTTCTTTCGGAATCCGAATTGAAAAT
ATTATACAAGTTgtagagaaaaaattaaaagtaagTCTTACAATCCTTGT
ACATCAAAGAGAGCTGCTTTTGTTtatagtttttggacctaccccggtgg
ggtggaggtcctataaattcacctctgtccgtccgtccgtccgttcgtta
ccagcttttctcgagattgaatcataNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNaacggctaaaaaacgggttttttggacttt
gtgaaaaattggatcattaattttttctgattttttacatgaaagtaggg
taccatcataggtaaaagatcgctcaagcagatttttgcaaaaaaattta
tttggcttaaaaaacgcatgtttatctataagaatcactattaataagca
tacaccaatgttcttagtcaaattactcaatttttttaatgagatatatg
ttttttttttgctcatgagggcttacttttaaagaatatgtgtgttagCC
ATGAAATTTTCGTTGCTTTGCgtgttttttagaaaaactggccaaattcg
atatttttttataagcacattatcaattacttaggtacgttagcttttct
cgagattggctctttcattcttcatgactttttgcacaaagatgcataac
caTAAACtgtcgaatgtgacggagcccaatttttgaaaaaaaaaatgttt
tagggcaaatttgggccaaaaacggctaaacaacgggttttttggacttt
gtagaaaattggatcattgattttttctgattttttgcatgaaagtaggt
taccatcataggtaaaagatggcttagggagatttttgcaaaaaagattt
gttggctcaaaaaacgcatgtcgccgtgtcaattcaagacagccttaagt
ccattttttccattttgagataattgactttaaaggttgAGATGTGTTGG
GNggaggtcctataaattcacctctgtccgtccgtccgtccgttcgttac
cagcttttctcgagattgaatcataggaatcatctGATTTTTGgaacaaa
ggtgcaaaatggtagtggccaaaatgtgacggagcccgattttcgaaaaa
atatttttttgggccaatttgggctaaaaaacggctaaaaaacgggtttt
ttggactttgtgaaaaattggatcattaattttttctgattttttacatg
aaagtagggtacNNNNNNNNNNGaaatttgcactaaaatttaggacttaa
ggctgtttatggttgatatattatggaacattctaaattcttattttttt
tgaattgcaaaatacacctatttcccattagaattctgtggacttaaggc
cgtttttggaaagcgtgcatgctgaaatagggggttatggtctttagtca
attttcgaaaaaatggacttaagtctgtcttgaattgacacggcgatgtt
tatctataagaatcactattaataagcatacattaatattcttagtcaaa
ttactcaatttttttatgagacagatgttttttttctcatgagggcttac
ttttgaagcaattgtgtgtttagacatgaaattttcgttacttggcgtgt
ttttatagaaaaactggccaaattcgatatttttttataagcacattatc
aattacttaggtattagcttttctcgagattggctctttcattctttatg
attttttgcacaaagatgcataactataaaccttcgaatgtgacggagcc
tgattttcgaaaaaaaatgtttttgggcaaaaatggattttttggacttt
gtgaaatattggatcgttgattttttgcatgaaagtagctAAAAGATgtg
tcaagcagatttttgtaaaaaaaaacttttcagctcaaaaaacgcatctt
tatctataagaatcaccattaataagcatacatcaatgttcttagccaaa
ttactcaattttttgatgagatagatgttttttgtcttgaatatgaaaga
atatttcaagagcatgaaattttggtttctaaacgtttttttttataaga
aacaaacgactaattttaataagtcgtcactatttgtgttctgaatgatt
gtttaacgttcatatgctcacgtagatatcaattatatatgtgttaaatg
cccaactaggtaggtccataaaagtatcacttgtcttCTATTATTATCAC
TGACTGTTCAGCCAAGGTATCTTCTAGtggaattagtatatgtaatcaca
tgataacgagtgcaattcgaatataattgcacgagtgatttttttgttat
taattttccgagtccgaaaggacgaggaaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgtgcaattttcgaattgtacgagttat
tatgtgattacgagctaatcgcacaatggcttccACTACTTTTtaccagt
taggaaagtaaattagtactagtaatcgtcagtaaacattcgaaaacctc
cttttttcttttgtttaaaaagaaaacattgcagtgtaatttttctttgt
tttcaattaaaagaagctactgtaacgtaaaatttctttgttctttttta
tattgaagaaaaaaaatgtctttgttttttattatatattaaaaaaaagt
ctccgtctgacacaggacttgggagagaaaagaataaggggacaaaagtg
tccccccgccgaagagtgcaaaaagtggtaatagtgcaattaacgattaa
ttgcactcctctaaaccaatcagattcgagtaattttgcacggctgacga
ttacagaaattacactgagagttttatattttctcttctctctgtgtctt
tcttttattgttgtttattgatttcctttctcacaaaatgaatttcgaat
gcaattaaaacgttcgatgcaaaaaaatgtaaaaaaaaacattaaaatca
tttttgtaaacattggcgcagcattgaagagtgtgattaacgattaattg
ctctctacagaatgcaattaacgattaattgctctctttgagggcgtgcc
aaataagaaaaaataacccatcgtgcgattaaccGTTAAAGCATTCACCA
TACTATAACTGGCTAAAAGGTAAAGAGTTTTTGTACCAATAGCTAACACT
TTTTAGTAGGAGCGAATCGTCTCTCatcagtacacgtttttttttttatt
agaacacctaaaatttggctgagcctggatgtgcttatttttttagcaat
tttcagcctaaaatgttcttaaatgcNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNgaggctgggcatgttcttaagatgt
tcttaatttttcgacgaatttcagcctatatgttcttataaactaggttc
taataaaaaaaaaaacgtgtattattgGGAGACTTCTGTGTTTAACTAGC
AGCGGGCTAATAACGATTTATTATCCACGATAACGATGTATTTTCTTGTT
CATTTCAGCATAATTATGGTAATAGAGGTTACTTAGGATTCGAAGTTGTC
ACAATGGTAAGGTTCATTTCATTTCTACTATACCAacataattgttttta
ttaacGAATGCCACCCAGCTTTAGTATGTTTCTATGGTTCGCTCGGACGT
GAGTAACCTCTGGAGGAACTATAAGTCAAATAGTGCGACACTTTAATAGT
TTAATCCTGGCAAGAGCTGAGAAAATTACATTTAAAGGTGCGGAGACTAT
ATGAACAATATTTGcagaagaacattttaaaacgaagtatttttttttct
ttttaggcaCCCCTTTACAAAGAATTGATTGTTCCCCAACTTTTATCAAC
AGAAGAGGTAActaaaagatatttctttatttttttaaccaTAGCTTTGT
ACACAAATTACCTGGGTAAGAGAGTaccccttttttataagaacaataag
gctcatacttgccaaaaaataagaattttgaaaaaataaaaaataataaa
ggttgggtataaatcctgaaaaatctcaatttcaCCTCATTAATAAGAAC
ATTATAAAGGTCAGCCACTGCCCAAAAGACCTTTGTTAAAGTTCCAAACA
TATAGAAATAGGTGAAACTTAGAAATCGACTCCATTAAAGAAAATATCTT
CTGTATTTTCCAATTGGTGAAAATCTGTGATTTCACCCACGTATGCTCTC
TGAGCATTTCGCACACAATTCTTCTTAGAAATATCTGTTTTTTATACATA
TCTAGCAAATTCTACAACAATTACAAAACAAATTAAAACCCCCAACGGAA
TAAATAACAAAACAACAGATAGTTACAAAACATTGAAGCGATAAAAGACC
ATAAACTATGTACGATAAATGAATTAATTAGATAAAAGTATTCTCTTGAT
ATTTACAAATAAACTGACGGACAGCGGCAGTAACAAACATGATCAGAGCA
ATTTAAGGcttaaagtgccaaaaaaataagaacagtcgagcCCTGTCAAa
agtttactggttcttataaaaaatgatttAGGGTTTTAGTTCTTGTTTCA
GCAGAAGGTAGTTTTTTGGATGGAAAACGTTTTCAGTTTACATTTTGGAA
TTAGCCATTATTTTGATAGAaagcttcttataaaaaaactttccaTTCCA
TCATCTCATTTTAGGTTGATTGGATAAATGACTATCACACTGAAGTATTT
GAGAAAGTGGGAAGTTATTTGAGAGACAATAATAAAGCAAATGTTGTTGA
TTGGCTCAAAAATGCCACATCACCTTTGGGCTAAAAGTATTGAAAATCTA
CTTTTAGTGAATTTTAACGgtttttttgtgcaattttttaatttttacgt
ttattaaattttaatgTCAACTTTAAGATAAGTTTTTAGTCATAGAAATT
AGCAAAATATATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038322XLOC_038322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061047-exon-scaffold_354-1491911889:281470..281492TCONS_00061047-exon-scaffold_354-1491911889:281470..281492Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:281470..281492TCONS_00061047-exon-scaffold_354-1510915933:281470..281492Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:281470..281492TCONS_00061047-exon-scaffold_354-1575043694:281470..281492Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1491911889:281802..281879TCONS_00061047-exon-scaffold_354-1491911889:281802..281879Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:281802..281879TCONS_00061047-exon-scaffold_354-1510915933:281802..281879Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:281802..281879TCONS_00061047-exon-scaffold_354-1575043694:281802..281879Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1491911889:282215..282283TCONS_00061047-exon-scaffold_354-1491911889:282215..282283Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:282215..282283TCONS_00061047-exon-scaffold_354-1510915933:282215..282283Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:282215..282283TCONS_00061047-exon-scaffold_354-1575043694:282215..282283Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1491911889:282654..282714TCONS_00061047-exon-scaffold_354-1491911889:282654..282714Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:282654..282714TCONS_00061047-exon-scaffold_354-1510915933:282654..282714Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:282654..282714TCONS_00061047-exon-scaffold_354-1575043694:282654..282714Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1491911889:283026..283200TCONS_00061047-exon-scaffold_354-1491911889:283026..283200Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:283026..283200TCONS_00061047-exon-scaffold_354-1510915933:283026..283200Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:283026..283200TCONS_00061047-exon-scaffold_354-1575043694:283026..283200Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1491911889:287628..287675TCONS_00061047-exon-scaffold_354-1491911889:287628..287675Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:287628..287675TCONS_00061047-exon-scaffold_354-1510915933:287628..287675Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:287628..287675TCONS_00061047-exon-scaffold_354-1575043694:287628..287675Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1491911889:287926..287976TCONS_00061047-exon-scaffold_354-1491911889:287926..287976Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:287926..287976TCONS_00061047-exon-scaffold_354-1510915933:287926..287976Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:287926..287976TCONS_00061047-exon-scaffold_354-1575043694:287926..287976Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1491911889:288784..289034TCONS_00061047-exon-scaffold_354-1491911889:288784..289034Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1510915933:288784..289034TCONS_00061047-exon-scaffold_354-1510915933:288784..289034Clytia hemisphaericaexon
TCONS_00061047-exon-scaffold_354-1575043694:288784..289034TCONS_00061047-exon-scaffold_354-1575043694:288784..289034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:281470..289034 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.34414e-07	0	0.554813	0.138994	6.34848	4.20658	9.23765	10.1572	8.51446	7.97747	6.6025	6.37084	7.93769	6.61701	0.159035	0	0	0.44739	0.00016249	0	0	0	0.677612	0	8.99483	14.7563	0	0	0.115003	3.17074
Blast
[Close]
BLAST of TCONS_00061047 vs. Swiss-Prot (Human)
Match: XPP1 (Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 1.696e-49
Identity = 84/128 (65.62%), Postives = 100/128 (78.12%), Query Frame = 1 
Query:   25 EQDKFVSLSFETISSIGPNCAVIHYKPEMETAKVLSTD-MYLCDSGGQYLDGTTDVTRTIHLGTPTDHQKETYTRVLKGHIQLARAVFPKGTRGHILDVLARAPLWEIGLEYAHGTGHGVGAFLNVHE 405
            +Q  FV LSF TISS GPN A+IHY P  ET + LS D +YL DSG QY DGTTDVTRT+H GTPT ++KE +T VLKGHI ++ AVFP GT+GH+LD  AR+ LW+ GL+Y HGTGHGVG+FLNVHE
Sbjct:  372 QQADFVDLSFPTISSTGPNGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFGTPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHE 499
The following BLAST results are available for this feature:
BLAST of TCONS_00061047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPP11.696e-4965.63Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP... [more]
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