TCONS_00061036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061036
Unique NameTCONS_00061036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061036 ID=TCONS_00061036|Name=TCONS_00061036|organism=Clytia hemisphaerica|type=transcript|length=1988bp
ACCGAGCTTTATATGGACCCTAGGGAGGCAGTAATTATTTCGGTCAACTT
CTGTCAAGTcttttatcagattttttttgTGTGGTGCTCTAAGCACCACT
GAATACCGGTGTAGATGCAATTTAAGCACTAGGTCAagtttttcttgaat
atttGTGATGACCTTGCGCCCGTTGACGTTAATTTTCACAAAGATATTGC
TTTTTCTGTGAGTTTGAAATATAACTCACTCACGGTGAATCTCGTGCTTA
AATATGGGTTAATAACTTGCAGCTTTCTCTTTTATAATGTAAGGTTATCG
TGGTATGCAGCGAGTAGAGAAAGTTATGAGCACCAGCATACAAAACATAT
CAGTTATGTTTTGTGGTGACGCGGATGGCAATTTCCTTCCCCAATGGTAG
TATATAAATCAAAATGTGTTTGGGACAAATGGACGGAAGGCGGTCCTAGA
GGTGAAATATGCCATTGCTTATAATAGCTCTTTAACCTTGTCGCTTTTGC
ATTGTACTGATAGACAGAAGGTATTACCATTGTGTTGCTCTAATGGCAAG
TCTGACATTCCACCTGTTTGCTCGGAGGTTAGGCAGAATTTCCGGAAATG
TAACCCTTTTTTGATGTACTTGGACGGGCCAGGGGCCACTCCACAAGAGG
CTGGTTCGAGACCCGGACGTTGGTCCTGCTGCCACACTTACAAAAGTTAC
CACccggaaaaaaagtaaacattggCGACAATCTAGGATGTATTTTTTCA
GCTGAGGTATGTTATATTTGTGCAACACAAAACAAATCGGTTTTTAACTA
AACCCAATGAGTTTCTTCGCAACAAAANATGTTATATTTGTGCAACACAA
AACAAATCGGTTTTTAACTAAACCCAATGAATTTCTTCGCAACAAAACAT
GCTTGAAAGTGTCTCTGTTCAAAGTTTACATATCCACACAATTTCTTAAC
CTAGCAGCAGCGAGCGTCATATAATAGCTCTCTATCTTCTCTTAAACACA
GGGCATTTCGCTGTGTAAGGAAATTTTAATAAGTTTCCTACCCCTTGTGC
CAAACTCAACCCATCTTTGCCAGCCGTTGGATGTGGCAGTATTCAAGCCA
CTGAAGCAAGTTTTGAGCAGTGTGCTACGAAAGTGGCGCTCGGAGACACA
CACGAAGAAAGAAATCCCCCAGACATCGTTCCCGTTACTGTTAAGGCGGA
CGTGCATAAATCTCAAACCAAAGAACTTAAGTCCAGATTTCGTACATGTG
GTATCGCTCCTGTGAACAAAGATGAAATCCTGAGAAAAATCCCCCCAGAG
GAAAGAAATGTTATGGAAGTTCTGAAGCAGGGGACGGTAGAACTCCTGAA
AGAAATGTACCCAAAACCACAACTCAGACACAGAAGAGAGGCCGTAAAGT
CGAACCCGGCCGTAACGTGGCAGATATGAGCACGGACGAGAAAGACGCGA
AAGTGACACAGTGttggaagatgaagaagaaaaggaagaagaagaaggag
aagtaACGGACTGGTCTGACGAAGAAAGTGAAGACGAAGAACTGGACGAT
GAAGAGTTTAATGAAGATCTTGGTGACTGAAATGAAAATCGAATGAAAAT
CGGGAAGAGCTAGATGAGGACATGGATTATGCTGTTGATTACGAGTTCGA
CGAGAACGTTTTACCCTATAAAGAAGACGACGAAGATGACGAGCTGTCAG
AGGGTGTTTGCACAGTGGAAATCAATAGGCCAAAAAGGCAGGAGCCACCG
GCATGTCAAGTAGACAATGAACAAAATAACGATGAAGAAGCAGAAGggca
atggaattgcttcaagTGTAAAAAAGATTATGACGGTGCCAATGAAGAAA
TATGGGTTAAATACGAGTTTCACAAATGTCGGAAACGCTTCCACGTGTAA
TGCAGGGGAAGATGCATGCGAAGAACAACTGAAAGATGTCAACTTCCGGT
GTCGACATTGTCGTCGAatgaaatgatttattttccTC
Run BLAST on NCBI

transcript from alignment at scaffold_354:17718..21192+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061036 ID=TCONS_00061036|Name=TCONS_00061036|organism=Clytia hemisphaerica|type=transcript|length=3475bp|location=Sequence derived from alignment at scaffold_354:17718..21192+ (Clytia hemisphaerica)
ACCGAGCTTTATATGGACCCTAGGGAGGCAGTAATTATTTCGGTCAACTT
CTGTCAAGTcttttatcagattttttttgTGTGGTGCTCTAAGCACCACT
GAATACCGGTGTAGATGCAATTTAAGCACTAGGTCAagtttttcttgaat
atttGTGATGACCTTGCGCCCGTTGACGTTAATTTTCACAAAGATATTGC
TTTTTCTGTGAGTTTGAAATATAACTCACTCACGGTGAATCTCGTGCTTA
AATATGGGTTAATAACTTGCAGCTTTCTCTTTTATAATGTAAGGTTATCG
TGGTATGCAGCGAGTAGAGAAAGTTATGAGCACCAGCATACAAAACATAT
CAGTTATGTTTTGTGGTGACGCGGATGGCAATTTCCTTCCCCAATGGTAG
TATATAAATCAAAATGTGTTTGGGACAAATGGACGGAAGGCGGTCCTAGA
GGTGAAATATGCCATTGCTTATAATAGCTCTTTAACCTTGTCGCTTTTGC
ATTGTACTGATAGACAGAAGGTATTACCATTGTGTTGCTCTAATGGCAAG
TCTGACATTCCACCTGTTTGCTCGGAGGTTAGGCAGAATTTCCGGAAATG
TAACCCTTTTTTGATGTACTTGGACGGGCCAGGGGCCACTCCACAAGAGG
CTGGTTCGAGACCCGGACGTTGGTCCTGCTGCCACACTTACAAAAGTTAC
CACccggaaaaaaagtaaacattggCGACAATCTAGGATGTATTTTTTCA
GCTGAGGTATGTTATATTTGTGCAACACAAAACAAATCGGTTTTTAACTA
AACCCAATGAGTTTCTTCGCAACAAAANATGTTATATTTGTGCAACACAA
AACAAATCGGTTTTTAACTAAACCCAATGAATTTCTTCGCAACAAAACAT
GCTTGAAAGTGTCTCTGTTCAAAGTTTACATATCCACACAATTTCTTAAC
CTAGCAGCAGCGAGCGTCATATAATAGCTCTCTATCTTCTCTTAAACACA
GGGCATTTCGCTGTGTAAGGAAATTTTAATAAGTTTCCTACCCCTTGTGC
CAAACTCAACCCATCTTTGCCAGCCGTTGGATGTGGCAGTATTCAAGCCA
CTGAAGCAAGTTTTGAGCAGTGTGCTACGAAAGTGGCGCTCGGAGACACA
CACGAAGAAAGAAATCCCCCAGACATCGTTCCCGTTACTGTTAAGGCGGA
CGTGCATAAATCTCAAACCAAAGAACTTAAGTCCAGTAAGTTTTTTTAGC
ACATATTTACCAACATTTGCTTCGTTTGCCACAAAGTGGGAGACATACGG
AGTATGTTGCCATCAATATTCGCTTTATAGGTATGACATTTTTGCCCGGG
ATAAAAAGACCATTTCTCCCTCAATTGAAAAACAATCCTTTTGATAAGAA
CAGTTTCCAAAactcgaagaaaaaaaaacagtgatGGCCTGCTTTCAACA
CAGGGGTTTAAAATTGGATAGTTGGGCTATTTaccaaaacattaaactaa
TAGCTAGATGTTCTTTATCATTTTTAGGATTTCGTACATGTGGTATCGCT
CCTGTGAACAAAGATGAAATCCTGAGAAAAATCCCCCCAGAGGAAAGAAA
TGTTATGGAAGTTCTGAAGCAGGGGACGGTAGAACTCCTGAAAGAAATGT
ACCCAAAACCACAAGTAAGACcacattatttaaaaagaacaatTCTGTGA
TTTGTGCAGAGAATCGATTCTAGAGTACCTTAAgtggtagcctggatatc
cagaccgtaaactatttcaccgtctagttctttataatcttgtctctggt
ttacggtctggtcccaCGATatttgtccctgcatatgcgagtgtatcTGA
TTGGACGCGCGATTTGTTCcgagtcactgagcagaattttcgcgggcttt
tctatatttttctatgcgcgcgtataatttatggaaaaaagctgacattg
caaaataatataaacaaatgaaaatgtaaacacagcttcatttctaaaca
aaatggccgctggaaagaAGCCTTTATAAATGTAgatgatgttttgatgt
agtttaaagtaagttttaaagttttctgAGTTTGTAAAATAGATTTTATG
ATAACTTAATTATGTGtatctgcctgggtttccaaagttttgatagtctg
tcaacaagggttttCACTCACAGACAGTATCAAACAAAATGTGCccgact
tttttagttgcaccagactctaaaattttagaaactttgtatgttgaggt
gagagttttttctgaaatttgagtctggatacccaggctacttaagtgga
taaattttgatgttgatttaatttggcgattggccaaaatacgattttgt
ggcggggatttaattatatatttgaaatgttacacaTCACAGCTCAGACA
CAGAAGAGAGGCCGTAAAGTCGAACCCGGCCGTAACGTGGCAGATATGAG
CACGGACGAGAAAGACGCGAAAGTGACACAGTGttggaagatgaagaaga
aaaggaagaagaagaaggagaagtaACGGACTGGTCTGACGAAGAAAGTG
AAGACGAAGAACTGGACGATGAAGAGTTTAATGAAGATCTTGGTGACTGA
AATGAAAATCGAATGAAAATCGGGAAGAGCTAGATGAGGACATGGTAAGT
GGCATTCACTGTGGTATATAACTAACCATTTGGGGCTATTTTTATCATGT
CGCCCTACATTTGGGAGGATGTCGGAAGACCATAGGGATTATTCGACAAG
AACTTATTTACCTATCAAATGGGTATGCGGTTAGGCCGTCCCGACCATCT
TTGAACAAGGACATAAAATGACACTCAGGGTTGTGTACGAGTATTAACCT
CAATAATTTGCCCTTAAAGGATTATGCTGTTGATTACGAGTTCGACGAGA
ACGTTTTACCCTATAAAGAAGACGACGAAGATGACGAGCTGTCAGAGGGT
GTTTGCACAGTGGAAATCAATAGGCCAAAAAGGCAGGAGCCACCGGCATG
TCAAGTAGACAATGAACAAAATAACGATGAAGAAGCAGAAGggcaatgga
attgcttcaagTGTAAAAAAGATTATGACGGTGCCAATGAAGAAATGTAA
GACTTTTTAATAGCGTCTGCTGGTATATATTAGATTCTTGGTAGCCGTTG
GAACCATAGAAAGataaaaccaaaggaaaatagTGTCAGTGTTTAACATG
ATTGGCAACATAAGTTAATCATAGCATGCCAAGGCTTACTCGCGTGGCCA
TGAAAAGCTCATAGACACCCAAATAAGATCTAACCTGTTAGCATGCGTAA
GTAAGTAGAATATATCACACAAAATCGTTATTTCATAGATGGGTTAAATA
CGAGTTTCACAAATGTCGGAAACGCTTCCACGTGTAATGCAGGGGAAGAT
GCATGCGAAGAACAACTGAAAGATGTCAACTTCCGGTGTCGACATTGTCG
TCGAatgaaatgatttattttccTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038318XLOC_038318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061036-exon-scaffold_354-1491911889:17718..18952TCONS_00061036-exon-scaffold_354-1491911889:17718..18952Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1510915933:17718..18952TCONS_00061036-exon-scaffold_354-1510915933:17718..18952Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1575043694:17718..18952TCONS_00061036-exon-scaffold_354-1575043694:17718..18952Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1491911889:19245..19381TCONS_00061036-exon-scaffold_354-1491911889:19245..19381Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1510915933:19245..19381TCONS_00061036-exon-scaffold_354-1510915933:19245..19381Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1575043694:19245..19381TCONS_00061036-exon-scaffold_354-1575043694:19245..19381Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1491911889:20110..20361TCONS_00061036-exon-scaffold_354-1491911889:20110..20361Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1510915933:20110..20361TCONS_00061036-exon-scaffold_354-1510915933:20110..20361Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1575043694:20110..20361TCONS_00061036-exon-scaffold_354-1575043694:20110..20361Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1491911889:20587..20813TCONS_00061036-exon-scaffold_354-1491911889:20587..20813Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1510915933:20587..20813TCONS_00061036-exon-scaffold_354-1510915933:20587..20813Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1575043694:20587..20813TCONS_00061036-exon-scaffold_354-1575043694:20587..20813Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1491911889:21056..21192TCONS_00061036-exon-scaffold_354-1491911889:21056..21192Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1510915933:21056..21192TCONS_00061036-exon-scaffold_354-1510915933:21056..21192Clytia hemisphaericaexon
TCONS_00061036-exon-scaffold_354-1575043694:21056..21192TCONS_00061036-exon-scaffold_354-1575043694:21056..21192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:17718..21192 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0598276	0	0	0	0.0268936	0.0425034	0.0256393	0.0240032	0	0.124896	0.0202044	0.0132816	0.0132631	0	0.022648	0.0160319	0	0.0165516	0.0423987	0	0	0	0.771719	0.596694	0.0214114	0.0382183	0	0	0.394728	0.442041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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