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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061032 ID=TCONS_00061032|Name=TCONS_00061032|organism=Clytia hemisphaerica|type=transcript|length=688bp
ATAACTTTAAACTGAATACACATCAAACATAAAATGgatgaaattttaaa
gaaaattggaaTTGGAAATTTTACTCAACGTttcgaagatgaaaaaataa
cacCGGACATTGTTTCTTTTATGTCATTAAGTGACTTTGACCAGGTAGGA
CTTACAGATCGGGCATTGATAATGAAACTGCGTGTTTTGTGTTGTACTTT
TGGCacttttcaaccaaaaaaagaaaagttaagCTGTGGTGCACCAAAGT
ATGATATACCGAAAGAAGTTTTAGAAAGCCTACTGTTTGATGGTTTTTTG
ATTAAGGAGATAGCAAACCTGTTATCTGTTTCTGAGCGAACAATCCACAG
ACGGTTGAATGACTATGATTTGAAAGGACAAAGATTTGTTGACATCAGTA
TAGAAGATCTTGACAGAGAAATGGTTAAACTCACAACCCAGTTTCCAAGA
TGTGGCGAGGTTATGCTGAGAGAATTGCTCAAGAATAAAGGAATAATTGT
GCCCAGATATATGCTCCGGGAATCTATCCGAAATGTTGACAGCATTGGTA
TATTGCAGAGGTCAAAGCGTAAACTCCATAGAAGAGTCTATAATGTTAAA
GGACCAAACCACTTATGGCATTTAGATACCAACCACAAACTGGTGAGGTG
GTATTTCATTAtagttggagcagttgatggCTTTAGTC Run BLAST on NCBI protein sequence of TCONS_00061032-protein >TCONS_00061032-protein ID=TCONS_00061032-protein|Name=TCONS_00061032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MDEILKKIGIGNFTQRFEDEKITPDIVSFMSLSDFDQVGLTDRALIMKLR
VLCCTFGTFQPKKEKLSCGAPKYDIPKEVLESLLFDGFLIKEIANLLSVS
ERTIHRRLNDYDLKGQRFVDISIEDLDREMVKLTTQFPRCGEVMLRELLK
NKGIIVPRYMLRESIRNVDSIGILQRSKRKLHRRVYNVKGPNHLWHLDTN
HKLVRWYFIIVGAVDGFS Run BLAST on NCBI transcript from alignment at scaffold_353:3439..4126 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061032 ID=TCONS_00061032|Name=TCONS_00061032|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at scaffold_353:3439..4126 (Clytia hemisphaerica)
GACTAAAGccatcaactgctccaactaTAATGAAATACCACCTCACCAGT
TTGTGGTTGGTATCTAAATGCCATAAGTGGTTTGGTCCTTTAACATTATA
GACTCTTCTATGGAGTTTACGCTTTGACCTCTGCAATATACCAATGCTGT
CAACATTTCGGATAGATTCCCGGAGCATATATCTGGGCACAATTATTCCT
TTATTCTTGAGCAATTCTCTCAGCATAACCTCGCCACATCTTGGAAACTG
GGTTGTGAGTTTAACCATTTCTCTGTCAAGATCTTCTATACTGATGTCAA
CAAATCTTTGTCCTTTCAAATCATAGTCATTCAACCGTCTGTGGATTGTT
CGCTCAGAAACAGATAACAGGTTTGCTATCTCCTTAATCAAAAAACCATC
AAACAGTAGGCTTTCTAAAACTTCTTTCGGTATATCATACTTTGGTGCAC
CACAGcttaacttttctttttttggttgaaaagtGCCAAAAGTACAACAC
AAAACACGCAGTTTCATTATCAATGCCCGATCTGTAAGTCCTACCTGGTC
AAAGTCACTTAATGACATAAAAGAAACAATGTCCGgtgttattttttcat
cttcgaaACGTTGAGTAAAATTTCCAAttccaattttctttaaaatttca
tcCATTTTATGTTTGATGTGTATTCAGTTTAAAGTTAT Coding sequence (CDS) from alignment at scaffold_353:3439..4126 >TCONS_00061032 ID=TCONS_00061032|Name=TCONS_00061032|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_353:3439..4126 (Clytia hemisphaerica)
ACTAAAGccatcaactgctccaactaTAATGAAATACCACCTCACCAGTT
TGTGGTTGGTATCTAAATGCCATAAGTGGTTTGGTCCTTTAACATTATAG
ACTCTTCTATGGAGTTTACGCTTTGACCTCTGCAATATACCAATGCTGTC
AACATTTCGGATAGATTCCCGGAGCATATATCTGGGCACAATTATTCCTT
TATTCTTGAGCAATTCTCTCAGCATAACCTCGCCACATCTTGGAAACTGG
GTTGTGAGTTTAACCATTTCTCTGTCAAGATCTTCTATACTGATGTCAAC
AAATCTTTGTCCTTTCAAATCATAGTCATTCAACCGTCTGTGGATTGTTC
GCTCAGAAACAGATAACAGGTTTGCTATCTCCTTAATCAAAAAACCATCA
AACAGTAGGCTTTCTAAAACTTCTTTCGGTATATCATACTTTGGTGCACC
ACAGcttaacttttctttttttggttgaaaagtGCCAAAAGTACAACACA
AAACACGCAGTTTCATTATCAATGCCCGATCTGTAAGTCCTACCTGGTCA
AAGTCACTTAATGACATAAAAGAAACAATGTCCGgtgttattttttcatc
ttcgaaACGTTGAGTAAAATTTCCAAttccaattttctttaaaatttcat
cCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061032-exon-scaffold_353-1491911889:3439..4126 | TCONS_00061032-exon-scaffold_353-1491911889:3439..4126 | Clytia hemisphaerica | exon |
| TCONS_00061032-exon-scaffold_353-1510915933:3439..4126 | TCONS_00061032-exon-scaffold_353-1510915933:3439..4126 | Clytia hemisphaerica | exon |
| TCONS_00061032-exon-scaffold_353-1575043694:3439..4126 | TCONS_00061032-exon-scaffold_353-1575043694:3439..4126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_353 | supercontig | scaffold_353:3439..4126 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011517 | RNA_pol_sigma70_ECF-like |
Blast
The following BLAST results are available for this feature:
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