TCONS_00061026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061026
Unique NameTCONS_00061026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061026 ID=TCONS_00061026|Name=TCONS_00061026|organism=Clytia hemisphaerica|type=transcript|length=451bp
GAGAAACATCAAGGAAGCGTTTTTCAATAAAGCACTATCACCTGTAGAAC
GTATCCATTTGATTTGGCAAACCATTTTCTTCCTACGTATTTGGAGACTT
TGGCTGAAGGCAAACACCTACAACGAACAGGATCATTTCATCACGCAAAA
CGCATATGTTTGTACCGAGCTTAACGGCCATTTGCTCATCAACCTTGTCC
ACAATGTCATCACTGGTAAATTCCCAAAGGAAGCTCTCCGTGTTTGGACA
TATGGGTCACAATCTTGTGAGCAAACCTTTCGATTGCTACGCTCAATGAC
TTCCACGTTCTCAACTATCGTAAACTTTTCCATGAAAGGAATCCTTGAAC
GAATGCACAAGCTACATTACCTATCTACGGTTGAAGCATCAGAAGAAATC
ATCTTCCCTAGAGTTAAACGTAGACTCTTGCAAACAAGAGAGGAAACTGA
G
Run BLAST on NCBI

protein sequence of TCONS_00061026-protein

>TCONS_00061026-protein ID=TCONS_00061026-protein|Name=TCONS_00061026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
RNIKEAFFNKALSPVERIHLIWQTIFFLRIWRLWLKANTYNEQDHFITQN
AYVCTELNGHLLINLVHNVITGKFPKEALRVWTYGSQSCEQTFRLLRSMT
STFSTIVNFSMKGILERMHKLHYLSTVEASEEIIFPRVKRRLLQTREETE
Run BLAST on NCBI

transcript from alignment at scaffold_353:16928..17542+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061026 ID=TCONS_00061026|Name=TCONS_00061026|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at scaffold_353:16928..17542+ (Clytia hemisphaerica)
GAGAAACATCAAGGAAGCGTTTTTCAATAAAGCACTATCACCTGTAGAAC
GTATCCATTTGATTTGGCAAACCATTTTCTTCCTACGTATTTGGAGACTT
TGGCTGAAGGCAAACACCTACAACGAACAGGATCATTTCATCACGCAAAA
CGCATATGTTTGTACCGAGCTTAACGGCCATTTGCTCATCAACCTTGTCC
ACAATGTCATCACTGGTAAATTCCCAAAGGAAGCTCTCCGTGTTTGGACA
TATGGGTCACAATCTTGTGAGCAAACCTTTCGATTGCTACGCTCAATGAC
TTCCACGTTCTCAACTATCGTAAACTTTTCCATGAAAGGTAAGTGTGACT
TTATTAGCCCAAAATGatttatctgaaaaaaaaaatgctaTCTTCATGTT
ATTGTGTACATCCTTATACTTTCCACATACAATTCAGAATTTCAGTTCTC
TGTTTCTACAGCAAAGTCAAATTTGGCTCTAACTCTAAAACTTATCTTTT
AGGAATCCTTGAACGAATGCACAAGCTACATTACCTATCTACGGTTGAAG
CATCAGAAGAAATCATCTTCCCTAGAGTTAAACGTAGACTCTTGCAAACA
AGAGAGGAAACTGAG

Coding sequence (CDS) from alignment at scaffold_353:16928..17542+

>TCONS_00061026 ID=TCONS_00061026|Name=TCONS_00061026|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_353:16928..17542+ (Clytia hemisphaerica)
AGAAACATCAAGGAAGCGTTTTTCAATAAAGCACTATCACCTGTAGAACG
TATCCATTTGATTTGGCAAACCATTTTCTTCCTACGTATTTGGAGACTTT
GGCTGAAGGCAAACACCTACAACGAACAGGATCATTTCATCACGCAAAAC
GCATATGTTTGTACCGAGCTTAACGGCCATTTGCTCATCAACCTTGTCCA
CAATGTCATCACTGGTAAATTCCCAAAGGAAGCTCTCCGTGTTTGGACAT
ATGGGTCACAATCTTGTGAGCAAACCTTTCGATTGCTACGCTCAATGACT
TCCACGTTCTCAACTATCGTAAACTTTTCCATGAAAGGAATCCTTGAACG
AATGCACAAGCTACATTACCTATCTACGGTTGAAGCATCAGAAGAAATCA
TCTTCCCTAGAGTTAAACGTAGACTCTTGCAAACAAGAGAGGAAACTGAG
AGAAACATCAAGGAAGCGTTTTTCAATAAAGCACTATCACCTGTAGAACG
TATCCATTTGATTTGGCAAACCATTTTCTTCCTACGTATTTGGAGACTTT
GGCTGAAGGCAAACACCTACAACGAACAGGATCATTTCATCACGCAAAAC
GCATATGTTTGTACCGAGCTTAACGGCCATTTGCTCATCAACCTTGTCCA
CAATGTCATCACTGGTAAATTCCCAAAGGAAGCTCTCCGTGTTTGGACAT
ATGGGTCACAATCTTGTGAGCAAACCTTTCGATTGCTACGCTCAATGACT
TCCACGTTCTCAACTATCGTAAACTTTTCCATGAAAGGAATCCTTGAACG
AATGCACAAGCTACATTACCTATCTACGGTTGAAGCATCAGAAGAAATCA
TCTTCCCTAGAGTTAAACGTAGACTCTTGCAAACAAGAGAGGAAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038310XLOC_038310Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061026-proteinTCONS_00061026-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061026-exon-scaffold_353-1491911889:16928..17265TCONS_00061026-exon-scaffold_353-1491911889:16928..17265Clytia hemisphaericaexon
TCONS_00061026-exon-scaffold_353-1510915933:16928..17265TCONS_00061026-exon-scaffold_353-1510915933:16928..17265Clytia hemisphaericaexon
TCONS_00061026-exon-scaffold_353-1575043694:16928..17265TCONS_00061026-exon-scaffold_353-1575043694:16928..17265Clytia hemisphaericaexon
TCONS_00061026-exon-scaffold_353-1491911889:17430..17542TCONS_00061026-exon-scaffold_353-1491911889:17430..17542Clytia hemisphaericaexon
TCONS_00061026-exon-scaffold_353-1510915933:17430..17542TCONS_00061026-exon-scaffold_353-1510915933:17430..17542Clytia hemisphaericaexon
TCONS_00061026-exon-scaffold_353-1575043694:17430..17542TCONS_00061026-exon-scaffold_353-1575043694:17430..17542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_353supercontigscaffold_353:16928..17542 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.428881	0.165991	0.324792	0.988507	0.937357	0.376961	0.529359	0.864772	2.29534	0	1.75745	0.682504	1.41757	0.665965	0.982688	0.88043	1.24082	2.33762	2.60923	0.566973	0	0.168091	0.305639	0.944402	0.140476	1.20612	0.214535	0.162717	0.165783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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