TCONS_00061023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061023
Unique NameTCONS_00061023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061023 ID=TCONS_00061023|Name=TCONS_00061023|organism=Clytia hemisphaerica|type=transcript|length=433bp
GCTaccattttgcaaatttttgcaaattctATTTTCTTACTTCGTGTAAA
GACGGGGGTTACTAGATAGTTTAGTTTTACGCTGGCATTTTATTTTCTGT
TACTTTCatgattttgtaaaaaactCTCATTCAAACGATGTAATTTTCTA
GACTGTGAAAGTTATggtaaaaattttttctaattttacaaTTGCTTGCT
ATCATAGCTTACATTTTATGTTACCCCGTGTTTTTAAATCAAGAGTTTTT
AAATTAAGACAGCTCGGAACACAAATCGCTCCTGGAAAAGTGCCCTACTG
TAGAGGAACagctcatttttttcattttttttcgatttgccAGCAAAAAA
TTTAGCTGTTCCTACTCCAGTAGGGAAGTTTTCCAGGAGCGTCTTGTTTT
AAACTGTCTAAGGAGCAGCTCCGAAAAATCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_352:196398..196830

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061023 ID=TCONS_00061023|Name=TCONS_00061023|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at scaffold_352:196398..196830 (Clytia hemisphaerica)
GTCGATTTTTCGGAGCTGCTCCTTAGACAGTTTAAAACAAGACGCTCCTG
GAAAACTTCCCTACTGGAGTAGGAACAGCTAAATTTTTTGCTggcaaatc
gaaaaaaaatgaaaaaaatgagctGTTCCTCTACAGTAGGGCACTTTTCC
AGGAGCGATTTGTGTTCCGAGCTGTCTTAATTTAAAAACTCTTGATTTAA
AAACACGGGGTAACATAAAATGTAAGCTATGATAGCAAGCAAttgtaaaa
ttagaaaaaatttttaccATAACTTTCACAGTCTAGAAAATTACATCGTT
TGAATGAGagttttttacaaaatcatGAAAGTAACAGAAAATAAAATGCC
AGCGTAAAACTAAACTATCTAGTAACCCCCGTCTTTACACGAAGTAAGAA
AATagaatttgcaaaaatttgcaaaatggtAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038307XLOC_038307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061023-exon-scaffold_352-1491911889:196398..196830TCONS_00061023-exon-scaffold_352-1491911889:196398..196830Clytia hemisphaericaexon
TCONS_00061023-exon-scaffold_352-1510915933:196398..196830TCONS_00061023-exon-scaffold_352-1510915933:196398..196830Clytia hemisphaericaexon
TCONS_00061023-exon-scaffold_352-1575043694:196398..196830TCONS_00061023-exon-scaffold_352-1575043694:196398..196830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:196398..196830 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.269725	0.154448	0.358658	0	0.427176	0	0.203626	0.190632	0.533864	1.04805	0.641852	0.809893	1.10813	1.12514	1.11709	0.893718	0	1.02912	0.19601	0.704725	1.45978	2.16944	0	0.205326	0	0.303529	0.317525	0	0.974128	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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