TCONS_00061018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061018
Unique NameTCONS_00061018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061018 ID=TCONS_00061018|Name=TCONS_00061018|organism=Clytia hemisphaerica|type=transcript|length=663bp
CTTCCTCATCAAATAGACCATGTTCAAAAAGACAGTTCAAAACGTTTTAC
AGACTGTGGAGTTTTTACACCTCTTGTCGATAGTGATCACAAAGCGGTCA
TTTAAAAATAAGATTGATTTCACGTTTTAAAATCCAGTCATCCATCCGGC
AAAATATGATCCGACTTAATAACAACTCGCTTCTCGATCAACAGATTGCT
AAACACTTTGCTCAGACTGTAGTACAGAATTACGACAACACCGCTGATGG
TCCCACCTACTCTAAATTTGCCTCAGCTATTGAAAAAACTGCTTTTGAGA
ATCTTCCCAAATCATCTCGTCCACAACCAGACTGGTTTGAAGCTGATGAG
GAGAACCTTTTCAGTCTGATTGACAAGCGTAACCGTCTCTTGAAAGCACA
CATCAATCGTTCTACCCGATCGTCAACACAGAAACTCCGTACTGCTAGAA
AAGAGTTGACTAAAGCAATCTCGCGAGCAAAGGAGAACTGGATCTTACTA
AAACTTAACTCTTTGAATTCGACAGCTGCGTCTGTTAAAGGAACTAAACT
ATGTTGGGATTCAATAAAATCACTTAAGAACNAATCTCACGAGTAAAGGA
GAACTGGATCTTTCTGAAACTTAACTCTTTGAATTCGACAGCTGCATCTG
TTAAAGGAACTAA
Run BLAST on NCBI

protein sequence of TCONS_00061018-protein

>TCONS_00061018-protein ID=TCONS_00061018-protein|Name=TCONS_00061018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MIRLNNNSLLDQQIAKHFAQTVVQNYDNTADGPTYSKFASAIEKTAFENL
PKSSRPQPDWFEADEENLFSLIDKRNRLLKAHINRSTRSSTQKLRTARKE
LTKAISRAKENWILLKLNSLNSTAASVKGTKLCWDSIKSLKNXSHE
Run BLAST on NCBI

transcript from alignment at scaffold_352:57859..58521

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061018 ID=TCONS_00061018|Name=TCONS_00061018|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at scaffold_352:57859..58521 (Clytia hemisphaerica)
TTAGTTCCTTTAACAGATGCAGCTGTCGAATTCAAAGAGTTAAGTTTCAG
AAAGATCCAGTTCTCCTTTACTCGTGAGATTNGTTCTTAAGTGATTTTAT
TGAATCCCAACATAGTTTAGTTCCTTTAACAGACGCAGCTGTCGAATTCA
AAGAGTTAAGTTTTAGTAAGATCCAGTTCTCCTTTGCTCGCGAGATTGCT
TTAGTCAACTCTTTTCTAGCAGTACGGAGTTTCTGTGTTGACGATCGGGT
AGAACGATTGATGTGTGCTTTCAAGAGACGGTTACGCTTGTCAATCAGAC
TGAAAAGGTTCTCCTCATCAGCTTCAAACCAGTCTGGTTGTGGACGAGAT
GATTTGGGAAGATTCTCAAAAGCAGTTTTTTCAATAGCTGAGGCAAATTT
AGAGTAGGTGGGACCATCAGCGGTGTTGTCGTAATTCTGTACTACAGTCT
GAGCAAAGTGTTTAGCAATCTGTTGATCGAGAAGCGAGTTGTTATTAAGT
CGGATCATATTTTGCCGGATGGATGACTGGATTTTAAAACGTGAAATCAA
TCTTATTTTTAAATGACCGCTTTGTGATCACTATCGACAAGAGGTGTAAA
AACTCCACAGTCTGTAAAACGTTTTGAACTGTCTTTTTGAACATGGTCTA
TTTGATGAGGAAG

Coding sequence (CDS) from alignment at scaffold_352:57859..58521

>TCONS_00061018 ID=TCONS_00061018|Name=TCONS_00061018|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_352:57859..58521 (Clytia hemisphaerica)
TTACTCGTGAGATTNGTTCTTAAGTGATTTTATTGAATCCCAACATAGTT
TAGTTCCTTTAACAGACGCAGCTGTCGAATTCAAAGAGTTAAGTTTTAGT
AAGATCCAGTTCTCCTTTGCTCGCGAGATTGCTTTAGTCAACTCTTTTCT
AGCAGTACGGAGTTTCTGTGTTGACGATCGGGTAGAACGATTGATGTGTG
CTTTCAAGAGACGGTTACGCTTGTCAATCAGACTGAAAAGGTTCTCCTCA
TCAGCTTCAAACCAGTCTGGTTGTGGACGAGATGATTTGGGAAGATTCTC
AAAAGCAGTTTTTTCAATAGCTGAGGCAAATTTAGAGTAGGTGGGACCAT
CAGCGGTGTTGTCGTAATTCTGTACTACAGTCTGAGCAAAGTGTTTAGCA
ATCTGTTGATCGAGAAGCGAGTTGTTATTAAGTCGGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038302XLOC_038302Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061018-proteinTCONS_00061018-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061018-exon-scaffold_352-1491911889:57859..58521TCONS_00061018-exon-scaffold_352-1491911889:57859..58521Clytia hemisphaericaexon
TCONS_00061018-exon-scaffold_352-1510915933:57859..58521TCONS_00061018-exon-scaffold_352-1510915933:57859..58521Clytia hemisphaericaexon
TCONS_00061018-exon-scaffold_352-1575043694:57859..58521TCONS_00061018-exon-scaffold_352-1575043694:57859..58521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:57859..58521 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.525493	1.13302	0.537404	0.82016	0.613489	0.474476	1.02987	0.930461	0.548915	1.2687	0.467809	0.873432	0.428295	0.638348	0.248774	0.766581	0.194225	0.394486	0.166139	0.643415	0.256937	0.297836	0.217507	0.494621	2.16122	1.53518	0.107152	0.343067	0	0.0883689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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