TCONS_00061017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061017
Unique NameTCONS_00061017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061017 ID=TCONS_00061017|Name=TCONS_00061017|organism=Clytia hemisphaerica|type=transcript|length=346bp
TATTCAATCTTTTACGTATGTTCCATCGTAATTGTGTCAGAGCAATGTGT
AGAGTTAATCTGTTACATGTCAGGCGATATATAATCTCAAATGAGGAGTT
GTTGAATCGTATTGGCTTGTTGTCTATTGATAGTTACATCACGAAAAGGC
AGCTCTCATGGGCAGGGCATGTTGCTAGAATGAATTTTGATCGTCTTCCA
CGGAAAATGTTATCGTCATGGGTAAGGTGTAACCGCCCAAGTGGTTCACC
TGAATTTACTTATGGCCGTGGTTTGAAAAAGTGTATGAATAAGGCTAATG
TGCCTGTAATTAATTGGTTTGATTTGGCGCAAGATAGAATTGGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_352:56182..56527

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061017 ID=TCONS_00061017|Name=TCONS_00061017|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at scaffold_352:56182..56527 (Clytia hemisphaerica)
CAGCCAATTCTATCTTGCGCCAAATCAAACCAATTAATTACAGGCACATT
AGCCTTATTCATACACTTTTTCAAACCACGGCCATAAGTAAATTCAGGTG
AACCACTTGGGCGGTTACACCTTACCCATGACGATAACATTTTCCGTGGA
AGACGATCAAAATTCATTCTAGCAACATGCCCTGCCCATGAGAGCTGCCT
TTTCGTGATGTAACTATCAATAGACAACAAGCCAATACGATTCAACAACT
CCTCATTTGAGATTATATATCGCCTGACATGTAACAGATTAACTCTACAC
ATTGCTCTGACACAATTACGATGGAACATACGTAAAAGATTGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038301XLOC_038301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061017-exon-scaffold_352-1491911889:56182..56527TCONS_00061017-exon-scaffold_352-1491911889:56182..56527Clytia hemisphaericaexon
TCONS_00061017-exon-scaffold_352-1510915933:56182..56527TCONS_00061017-exon-scaffold_352-1510915933:56182..56527Clytia hemisphaericaexon
TCONS_00061017-exon-scaffold_352-1575043694:56182..56527TCONS_00061017-exon-scaffold_352-1575043694:56182..56527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:56182..56527 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.299258	0	0	1.79654	0	1.82961	0	0.622748	1.1686	0.539132	0	0.514912	0.283484	0	0	0.194401	0.543541	3.88822	0	0.536061	0	0	0	2.18896	0.438955	0	0.00541431	0.0145098	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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