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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061016 ID=TCONS_00061016|Name=TCONS_00061016|organism=Clytia hemisphaerica|type=transcript|length=2207bp
CTTCGtttaatgattttcaaattctctGTTCGTCCAAGCCAAAGCTGTTC
CAAAATATCAAACTGAAATTTTTATATTCTCATTTTATTATTATCAAATG
AAGTCGATGTGTTTTATTTCAATACTAATAGTTTCACGCCGTGGTGACAA
TCgccagttgaaaataaaatttaaaaaaactagagTTCGTTATATTCTCA
TTAtagattttattcaaaaaattattcttaaaaatcCTGATTGAATCAGG
TTCAATAATCacaaaaaatagccaaaaattaATACGATAGacataaaatt
caaattaacaTTATGGAGAACTGAATCAAAATACGGTCCTTCAAATTTCT
CTCCGTAAAAGAATACAAAGTTCTTGCTGTGTATAAGCTAAGTCCCTTAG
CTCGCCTTTTGATGATTCTAATAGTGATCAGGATTGTATCACGTtcatca
gtaaaataaaaaagtgataCCAGTGGCTCTGGTTAAAgagattcatgata
ttcatgacgtaatgttttctacggaaatgcccccgttttagccagtagtg
gcaaatttaaactagacaaaaaagTTGTTGCTGTGTATAAGAATAATATG
ATATTCGTGAGCAAACTCGAATCTAGTCCCTTAGCTCGCCTTTTGATGAT
TATGATAGCGCTCAGGattgtatcacgtccatcagtaaaataaaaaagtt
gtgcaagtggctctgggtacgagattggtTCGTAAAAAGATTGTTAGATA
TTTTCTCTACGCCAAGCTAATAATAAAACTGGAATTATTTCGGCAATTGT
TTATCGTCTTGTGTATTGTTAAAGtctttttaattagttttttacgTTGT
AGCTCTTCTATAAGCTTTTTCCACTCGCCTTTTTCTACATGCACTCTTGT
AAAATCGTGATAGGGACAAGATGTGTGTCAGGAGAAAATCGTTCTTAACT
TTTGGAAGCTTTTCAAGTATTTAGTTCTAATCATTTTGGGATTTTTGCAT
ATCGTGCATTTGTTTGTGGCGAGATAATTTTCGTAGAGATATTATATGAT
gaattttgtaagtattttgtATTTTAGATTCTTCTCTAATTTTCTTTTAG
ATTTTGACTATTTTCTGCATTTAACTTGTATTCTTGTGATTTCGTCAATA
GTAATTTTGTAGTAAGGTTTTGCTAGTTTTTCCTTTATGTACTTGTTTCT
AAACTagttttgtgtttactttcTAGCTGTAAATATACTGTCAAACCGTG
ACCGTTTTATTGTCCAGAATTCGTCTTCACCCAAACAAAACAGGAATGTT
AATGGTAACAGATGACGACGGAGAATTTCGTTTTCGTNTTCACCCAAACC
AAACAGGAATGTTAATGGTAACAGATGACGACGGAGaatttcgttttcgt
ttttgaGTTATTCCGATCGCAGAAATGATGTGTTGTACAGTGTCTCCATA
AATCGCACACGCGAGGGGAagacaaatttgttcgagttaaggaaaattCG
AATCAAGTAAATTTCGAGCTAAGGAAATTTTGACTAATGGAATAAGGTTT
ACAcggtattgttaactgaagggaccacaCAACACTTGTtccagttaagg
agacattcgagttatagagactccactatATACTTCAATATACTTCAACT
ATCGTGCAATAATTCCGTGAATTTTATTCCTGCAAACATTACAAAACTGG
AAGTGGTAAAACCTCAAGAAGAAGAAAGCCAAAACAAAAACACACCCTAT
TTCCTTTTAGAGTTAttcttgtttaaaaaaagcCGCAAGCAATACAAAAT
GTTTTTAGGTTCCTTTTTATTAGGACGAAGTTTTTGTTTTGTCGTTCTTT
ACAGTTTTAATGAAACAACAATAGACTTAACCAAAAAGAAAGGGTGTCGG
CCTTATTCAATTGTCTAACACACCCTAAAACCCTATGCTANGAAGGGTGT
CGGGCTTATTCAATTGTCTAACACACCCTAAAACCCTCTGCTACACATAC
AACATGAATTATTCAAAATGCACATTCATCGGAAGAAACACCCCCATGTG
TGGAAGTATGGAAATATGATTTCTAGATAAGGAATATATTCCGTACCAAT
AGTTTAaataattagcctccgtctcagaacgcggtcagaaaattttgcgg
ataatttcacagcgaaaatgcatccagtgaaatgtgagtaatgtatcgtG
ATTCAAG Run BLAST on NCBI transcript from alignment at scaffold_352:112004..114210- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061016 ID=TCONS_00061016|Name=TCONS_00061016|organism=Clytia hemisphaerica|type=transcript|length=2207bp|location=Sequence derived from alignment at scaffold_352:112004..114210- (Clytia hemisphaerica)
CTTCGTTTAATGATTTTCAAATTCTCTGTTCGTCCAAGCCAAAGCTGTTC
CAAAATATCAAACTGAAATTTTTATATTCTCATTTTATTATTATCAAATG
AAGTCGATGTGTTTTATTTCAATACTAATAGTTTCACGCCGTGGTGACAA
TCGCCAGTTGAAAATAAAATTTAAAAAAACTAGAGTTCGTTATATTCTCA
TTATAGATTTTATTCAAAAAATTATTCTTAAAAATCCTGATTGAATCAGG
TTCAATAATCACAAAAAATAGCCAAAAATTAATACGATAGACATAAAATT
CAAATTAACATTATGGAGAACTGAATCAAAATACGGTCCTTCAAATTTCT
CTCCGTAAAAGAATACAAAGTTCTTGCTGTGTATAAGCTAAGTCCCTTAG
CTCGCCTTTTGATGATTCTAATAGTGATCAGGATTGTATCACGTTCATCA
GTAAAATAAAAAAGTGATACCAGTGGCTCTGGTTAAAGAGATTCATGATA
TTCATGACGTAATGTTTTCTACGGAAATGCCCCCGTTTTAGCCAGTAGTG
GCAAATTTAAACTAGACAAAAAAGTTGTTGCTGTGTATAAGAATAATATG
ATATTCGTGAGCAAACTCGAATCTAGTCCCTTAGCTCGCCTTTTGATGAT
TATGATAGCGCTCAGGATTGTATCACGTCCATCAGTAAAATAAAAAAGTT
GTGCAAGTGGCTCTGGGTACGAGATTGGTTCGTAAAAAGATTGTTAGATA
TTTTCTCTACGCCAAGCTAATAATAAAACTGGAATTATTTCGGCAATTGT
TTATCGTCTTGTGTATTGTTAAAGTCTTTTTAATTAGTTTTTTACGTTGT
AGCTCTTCTATAAGCTTTTTCCACTCGCCTTTTTCTACATGCACTCTTGT
AAAATCGTGATAGGGACAAGATGTGTGTCAGGAGAAAATCGTTCTTAACT
TTTGGAAGCTTTTCAAGTATTTAGTTCTAATCATTTTGGGATTTTTGCAT
ATCGTGCATTTGTTTGTGGCGAGATAATTTTCGTAGAGATATTATATGAT
GAATTTTGTAAGTATTTTGTATTTTAGATTCTTCTCTAATTTTCTTTTAG
ATTTTGACTATTTTCTGCATTTAACTTGTATTCTTGTGATTTCGTCAATA
GTAATTTTGTAGTAAGGTTTTGCTAGTTTTTCCTTTATGTACTTGTTTCT
AAACTAGTTTTGTGTTTACTTTCTAGCTGTAAATATACTGTCAAACCGTG
ACCGTTTTATTGTCCAGAATTCGTCTTCACCCAAACAAAACAGGAATGTT
AATGGTAACAGATGACGACGGAGAATTTCGTTTTCGTNTTCACCCAAACC
AAACAGGAATGTTAATGGTAACAGATGACGACGGAGAATTTCGTTTTCGT
TTTTGAGTTATTCCGATCGCAGAAATGATGTGTTGTACAGTGTCTCCATA
AATCGCACACGCGAGGGGAAGACAAATTTGTTCGAGTTAAGGAAAATTCG
AATCAAGTAAATTTCGAGCTAAGGAAATTTTGACTAATGGAATAAGGTTT
ACACGGTATTGTTAACTGAAGGGACCACACAACACTTGTTCCAGTTAAGG
AGACATTCGAGTTATAGAGACTCCACTATATACTTCAATATACTTCAACT
ATCGTGCAATAATTCCGTGAATTTTATTCCTGCAAACATTACAAAACTGG
AAGTGGTAAAACCTCAAGAAGAAGAAAGCCAAAACAAAAACACACCCTAT
TTCCTTTTAGAGTTATTCTTGTTTAAAAAAAGCCGCAAGCAATACAAAAT
GTTTTTAGGTTCCTTTTTATTAGGACGAAGTTTTTGTTTTGTCGTTCTTT
ACAGTTTTAATGAAACAACAATAGACTTAACCAAAAAGAAAGGGTGTCGG
CCTTATTCAATTGTCTAACACACCCTAAAACCCTATGCTANGAAGGGTGT
CGGGCTTATTCAATTGTCTAACACACCCTAAAACCCTCTGCTACACATAC
AACATGAATTATTCAAAATGCACATTCATCGGAAGAAACACCCCCATGTG
TGGAAGTATGGAAATATGATTTCTAGATAAGGAATATATTCCGTACCAAT
AGTTTAAATAATTAGCCTCCGTCTCAGAACGCGGTCAGAAAATTTTGCGG
ATAATTTCACAGCGAAAATGCATCCAGTGAAATGTGAGTAATGTATCGTG
ATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061016-exon-scaffold_352-1575043694:112004..114210 | TCONS_00061016-exon-scaffold_352-1575043694:112004..114210 | Clytia hemisphaerica | exon |
| TCONS_00061016-exon-scaffold_352-1510915933:112004..114210 | TCONS_00061016-exon-scaffold_352-1510915933:112004..114210 | Clytia hemisphaerica | exon |
| TCONS_00061016-exon-scaffold_352-1491911889:112004..114210 | TCONS_00061016-exon-scaffold_352-1491911889:112004..114210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_352 | supercontig | scaffold_352:112004..114210 - |
Blast
The following BLAST results are available for this feature:
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