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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060990 ID=TCONS_00060990|Name=TCONS_00060990|organism=Clytia hemisphaerica|type=transcript|length=1350bp
CAGGAGgagaaaaaaactttgtctccacttaatccgccattttgagCTAT
AAAATGCAAAGAGCGCGAGatctacaacaacaacaacttagATAGACTAG
TAACTAATCGTTGTATTTCACTCTGCATCTCCGCTTGCAACAGACTCACT
CCCTTCACTGAATACAATAAGCAATACGGACACTTGCTAGTCTACAATTT
AGAAGAAGCGCGGTTTTTgtaaaaacgaaaacgaaagtgggacgGACAAA
CAGACAGTTGCTTTTGAAAGGCCCGTTCGCTAACGCTGGGCCAATAACAC
GaataaattgtctttttttttgtaatgtcGATAAAGCATAACTCAATTAT
ATAGTTTTTTAACCGGATTTACTCCTGGTATTTGTTGAAGAAGGATTTTT
ATTAGTAGACGAAGACCTTGTTGTCGAGTAGGCAATCGAGGGTATTTGCG
ATGTGGTTGTAGAAGCTGAGGTAAAGGGGCAATGTGATAAATAATGGCCG
ACTCTCCTACATCCGTGACAAACTATATCGTCCATTCTATATTTTGAGTC
TTGTTTTGATTTGGGCTTTTCTTTGTCGTCATCGAACCTGgcctttttga
aaagtttagttTTTACTGATTCCGCGTTTTTTATAGCTCTCTTCAGTCTT
TTTTCTTCTGCCTCCCCTGATGACAGTTCGTTAGCCTTAAATTCTTTCAC
AGTGAACCAGCCGTATGTATCAGCGATTCTCAAATGCTTCACCCTGGTTA
GAATCAAATTTCTACCTTTTTCTAGATGATCTTTCATTGCTTGTACGTTT
TGGATTCCATGGCTTCTAAGGTGTCGTCAATAACCTCCAACACTTGTTGA
TTGTGTTTGAATTGATCGGTGTGGCCAGCTTTCGTAAATGTGATGTTGTC
ATTTAATCTCTGCCTATCCAATTTagcttttaattttgaaaaatttgtcg
AAGTACTAGCTGTTGTTTGATCGAGTGCCTGTTTGGCGTGATTCTCAGCT
TGTTGCATAACTGGTTGCATTTCGTTGCGAACTAATTGTTGTATTATAAC
TTGCAGTTGATTGTAGTCTACGACATTCTGTTGTTGCTCAGCCATGTTGG
TTTTCCTCTTCTCACAAGATACACGATGCTTTAcaagacacacacacaca
cacacacacatgaGTTAACTTCTTTGAGTGAATGCAAGAGCGaggatttt
cataattttttgaaCAGAATATAAAGGCTGAATAGCGCATGCATCTCATT
ATTACATAATGACGTGCATGCATAATTAAAATGCATTTCCGTGCAAAACT
GTCGAGAACCTgtttttccagcttttttcaaTCGCTGGAAACTTCGTctc Run BLAST on NCBI protein sequence of TCONS_00060990-protein >TCONS_00060990-protein ID=TCONS_00060990-protein|Name=TCONS_00060990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MKDHLEKGRNLILTRVKHLRIADTYGWFTVKEFKANELSSGEAEEKRLKR
AIKNAESVKTKLFKKARFDDDKEKPKSKQDSKYRMDDIVCHGCRRVGHYL
SHCPFTSASTTTSQIPSIAYSTTRSSSTNKNPSSTNTRSKSG Run BLAST on NCBI transcript from alignment at scaffold_351:27466..28815 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060990 ID=TCONS_00060990|Name=TCONS_00060990|organism=Clytia hemisphaerica|type=transcript|length=1350bp|location=Sequence derived from alignment at scaffold_351:27466..28815 (Clytia hemisphaerica)
gagACGAAGTTTCCAGCGAttgaaaaaagctggaaaaacAGGTTCTCGAC
AGTTTTGCACGGAAATGCATTTTAATTATGCATGCACGTCATTATGTAAT
AATGAGATGCATGCGCTATTCAGCCTTTATATTCTGttcaaaaaattatg
aaaatcctCGCTCTTGCATTCACTCAAAGAAGTTAACtcatgtgtgtgtg
tgtgtgtgtgtgtcttgTAAAGCATCGTGTATCTTGTGAGAAGAGGAAAA
CCAACATGGCTGAGCAACAACAGAATGTCGTAGACTACAATCAACTGCAA
GTTATAATACAACAATTAGTTCGCAACGAAATGCAACCAGTTATGCAACA
AGCTGAGAATCACGCCAAACAGGCACTCGATCAAACAACAGCTAGTACTT
cgacaaatttttcaaaattaaaagctAAATTGGATAGGCAGAGATTAAAT
GACAACATCACATTTACGAAAGCTGGCCACACCGATCAATTCAAACACAA
TCAACAAGTGTTGGAGGTTATTGACGACACCTTAGAAGCCATGGAATCCA
AAACGTACAAGCAATGAAAGATCATCTAGAAAAAGGTAGAAATTTGATTC
TAACCAGGGTGAAGCATTTGAGAATCGCTGATACATACGGCTGGTTCACT
GTGAAAGAATTTAAGGCTAACGAACTGTCATCAGGGGAGGCAGAAGAAAA
AAGACTGAAGAGAGCTATAAAAAACGCGGAATCAGTAAAaactaaacttt
tcaaaaaggcCAGGTTCGATGACGACAAAGAAAAGCCCAAATCAAAACAA
GACTCAAAATATAGAATGGACGATATAGTTTGTCACGGATGTAGGAGAGT
CGGCCATTATTTATCACATTGCCCCTTTACCTCAGCTTCTACAACCACAT
CGCAAATACCCTCGATTGCCTACTCGACAACAAGGTCTTCGTCTACTAAT
AAAAATCCTTCTTCAACAAATACCAGGAGTAAATCCGGTTAAAAAACTAT
ATAATTGAGTTATGCTTTATCgacattacaaaaaaaaagacaatttattC
GTGTTATTGGCCCAGCGTTAGCGAACGGGCCTTTCAAAAGCAACTGTCTG
TTTGTCcgtcccactttcgttttcgtttttacAAAAACCGCGCTTCTTCT
AAATTGTAGACTAGCAAGTGTCCGTATTGCTTATTGTATTCAGTGAAGGG
AGTGAGTCTGTTGCAAGCGGAGATGCAGAGTGAAATACAACGATTAGTTA
CTAGTCTATctaagttgttgttgttgtagatCTCGCGCTCTTTGCATTTT
ATAGctcaaaatggcggattaagtggagacaaagtttttttctcCTCCTG
Coding sequence (CDS) from alignment at scaffold_351:27466..28815 >TCONS_00060990 ID=TCONS_00060990|Name=TCONS_00060990|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_351:27466..28815 (Clytia hemisphaerica)
ATGAAAGATCATCTAGAAAAAGGTAGAAATTTGATTCTAACCAGGGTGAA
GCATTTGAGAATCGCTGATACATACGGCTGGTTCACTGTGAAAGAATTTA
AGGCTAACGAACTGTCATCAGGGGAGGCAGAAGAAAAAAGACTGAAGAGA
GCTATAAAAAACGCGGAATCAGTAAAaactaaacttttcaaaaaggcCAG
GTTCGATGACGACAAAGAAAAGCCCAAATCAAAACAAGACTCAAAATATA
GAATGGACGATATAGTTTGTCACGGATGTAGGAGAGTCGGCCATTATTTA
TCACATTGCCCCTTTACCTCAGCTTCTACAACCACATCGCAAATACCCTC
GATTGCCTACTCGACAACAAGGTCTTCGTCTACTAATAAAAATCCTTCTT
CAACAAATACCAGGAGTAAATCCGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060990-exon-scaffold_351-1491911889:27466..28815 | TCONS_00060990-exon-scaffold_351-1491911889:27466..28815 | Clytia hemisphaerica | exon |
| TCONS_00060990-exon-scaffold_351-1510915933:27466..28815 | TCONS_00060990-exon-scaffold_351-1510915933:27466..28815 | Clytia hemisphaerica | exon |
| TCONS_00060990-exon-scaffold_351-1575043694:27466..28815 | TCONS_00060990-exon-scaffold_351-1575043694:27466..28815 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_351 | supercontig | scaffold_351:27466..28815 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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