TCONS_00060988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060988
Unique NameTCONS_00060988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060988 ID=TCONS_00060988|Name=TCONS_00060988|organism=Clytia hemisphaerica|type=transcript|length=474bp
TGAGGCTCCCGAAGATCGTGCCACACTCGCGAGTGGTCAGCCCAAAGTAA
AATACATCCAAATTGAATAAGAATCCAGATATTTATTGTAAAGACACACA
GAACCAATCACTCTTTCCGTTGACGAAATGAGATCGATTTTTCTTTACAT
CAAACCCTCCACCAAATGAAAAGCGGAATTGAAACTTTTGATGCAGCATT
TTCCACTAAAAGCCCTCTTTGCTGAAGATTTATTGGAGATCTTACTCGCA
TCAGATACGATAAAATATATGTTCGTCAGCACTTTGAGAGGATTTTGGTG
AAGTTTCCTAAGTGATATCCTATACTTTAGAAACTAATTTAATAAAGACT
GATCTCTTAAAGTGCATATGGAAAAATTTagtcaaatttgagtaaatATG
AGCAAAAAATCGACCTTTAAGGtgtattttcttaaaaatcttaaTATGTC
CATTTTGAGGCAAAAAAGCTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_350:176620..177093

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060988 ID=TCONS_00060988|Name=TCONS_00060988|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_350:176620..177093 (Clytia hemisphaerica)
ATCAAGCTTTTTTGCCTCAAAATGGACATAttaagatttttaagaaaata
caCCTTAAAGGTCGATTTTTTGCTCATatttactcaaatttgactAAATT
TTTCCATATGCACTTTAAGAGATCAGTCTTTATTAAATTAGTTTCTAAAG
TATAGGATATCACTTAGGAAACTTCACCAAAATCCTCTCAAAGTGCTGAC
GAACATATATTTTATCGTATCTGATGCGAGTAAGATCTCCAATAAATCTT
CAGCAAAGAGGGCTTTTAGTGGAAAATGCTGCATCAAAAGTTTCAATTCC
GCTTTTCATTTGGTGGAGGGTTTGATGTAAAGAAAAATCGATCTCATTTC
GTCAACGGAAAGAGTGATTGGTTCTGTGTGTCTTTACAATAAATATCTGG
ATTCTTATTCAATTTGGATGTATTTTACTTTGGGCTGACCACTCGCGAGT
GTGGCACGATCTTCGGGAGCCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038288XLOC_038288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060988-exon-scaffold_350-1491911889:176620..177093TCONS_00060988-exon-scaffold_350-1491911889:176620..177093Clytia hemisphaericaexon
TCONS_00060988-exon-scaffold_350-1510915933:176620..177093TCONS_00060988-exon-scaffold_350-1510915933:176620..177093Clytia hemisphaericaexon
TCONS_00060988-exon-scaffold_350-1575043694:176620..177093TCONS_00060988-exon-scaffold_350-1575043694:176620..177093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:176620..177093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.267757	0	0.151584	0	0.180542	0	0.172122	0	0.225633	0	0.135637	0.713297	0.178076	0.64727	0.304082	0.0815816	0.201004	0.103011	0.284631	0.148923	1.81218	1.13646	0.153502	0	0	0	3.30433	2.15506	0	0.151394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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