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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060983 ID=TCONS_00060983|Name=TCONS_00060983|organism=Clytia hemisphaerica|type=transcript|length=1305bp
ctttctatcattccCTATATTAAAGAAAGGCATTGGTAAAAGATAAAGGG
TGTTTAGGATAAAGGGTGGATTAGATGAGGGTTGCCACGATTAAACCAAC
TCAATAAGGTAGAAAATCTGGATATTTCATGGGCAAGTATGTTAGTAAAA
AATTTTTAAGTGTCCATTTCTGAACAAAACTTTAGCAAAAAATGAGCATC
AAttttataaagactttcaaTGATTTTCACCAACTGTTAAAGCTACATCA
TATACAAAAAGTTTGCTTGTTCATTGGAAATGGTCCGAAACTGCAATACA
AAGACCTTGATGCTGTTAAGCTAAAAACAAGTCATGCTATTGAGACCATT
GTTGGGCTAAAACCTTCAGAAATTGTTAAAAGAACTGAATCAGAATATCA
AAAATGTTTAGTTTTGTATGGTGGTGATACTTTCATTGAAGATAAGCCTG
ACCTCGGAGCGGTTATTCATTatgtaaagaaaaaatataaccCTATTCTT
GTATCTGTTCAATGCTGGAAAGAATTTGATGAGCATGTTGATTATGTTTG
GACATATCCAGAACAGATCTCTGATCAAGGGAGGGTAATTTACGGTGGAT
TTGATGAAAAAGGGAAGCCAGTTGGAGGGACAAGTGTCTATTTGAGTGAG
GAAATCCAAAAAATGTTGACTGCTGTTTTCAATGTTGATGCTCGAGGACG
GGTTGGTTCAAAAGAGAGAGACTTCTCTGTGAAACAAAAACTTAATGTTG
TAAACATAGAAGCTTTaccaaaatattctttttgaaatgcaagaagagat
ttttttattattttccaattttcaaagaatctttgtattcgtcttttatt
ttaaatcaaACTCGATAGTGCTCGATGATAAACAAAAGATACCAGAACCg
agtaaaattgaaaataattgtcTTTCAATAAAAGTTCATAACTTAAAGTT
TTGTGCTTCTGCACTTGTTCAAATGTACAAGAGTGAAATAATCTATaaaa
atctttgtgtaaaaCAATAGAACATGCAGATAATTAGATGATTCAACTGT
TTAGACAAGGGGTAATAAAAGCGACGGACTTCGtcaaaaaaagtagaaat
ataatttttagtcTGTTGGGACTagtttaaagtttttcaaaattaaccct
ttccggacgcacgggccactgggtggcccatgaatcgtgttcctatatga
cgcacaggccaccgggtggcccatagctttgtaaaagattttaacagttt
tcgcgccaaaatacaataacatggttttgaataatgattttgagataaat
ttccc Run BLAST on NCBI protein sequence of TCONS_00060983-protein >TCONS_00060983-protein ID=TCONS_00060983-protein|Name=TCONS_00060983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MSINFIKTFNDFHQLLKLHHIQKVCLFIGNGPKLQYKDLDAVKLKTSHAI
ETIVGLKPSEIVKRTESEYQKCLVLYGGDTFIEDKPDLGAVIHYVKKKYN
PILVSVQCWKEFDEHVDYVWTYPEQISDQGRVIYGGFDEKGKPVGGTSVY
LSEEIQKMLTAVFNVDARGRVGSKERDFSVKQKLNVVNIEALPKYSF Run BLAST on NCBI transcript from alignment at scaffold_350:115200..116504 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060983 ID=TCONS_00060983|Name=TCONS_00060983|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at scaffold_350:115200..116504 (Clytia hemisphaerica)
gggaaatttatctcaaaatcattattcaaaaccatgttattgtattttgg
cgcgaaaactgttaaaatcttttacaaagctatgggccacccggtggcct
gtgcgtcatataggaacacgattcatgggccacccagtggcccgtgcgtc
cggaaagggttaattttgaaaaactttaaactAGTCCCAACAgactaaaa
attatatttctactttttttgaCGAAGTCCGTCGCTTTTATTACCCCTTG
TCTAAACAGTTGAATCATCTAATTATCTGCATGTTCTATTGttttacaca
aagatttttATAGATTATTTCACTCTTGTACATTTGAACAAGTGCAGAAG
CACAAAACTTTAAGTTATGAACTTTTATTGAAAgacaattattttcaatt
ttactcGGTTCTGGTATCTTTTGTTTATCATCGAGCACTATCGAGTttga
tttaaaataaaagacgaatacaaagattctttgaaaattggaaaataata
aaaaaatctcttcttgcatttcaaaaagaatattttggtAAAGCTTCTAT
GTTTACAACATTAAGTTTTTGTTTCACAGAGAAGTCTCTCTCTTTTGAAC
CAACCCGTCCTCGAGCATCAACATTGAAAACAGCAGTCAACATTTTTTGG
ATTTCCTCACTCAAATAGACACTTGTCCCTCCAACTGGCTTCCCTTTTTC
ATCAAATCCACCGTAAATTACCCTCCCTTGATCAGAGATCTGTTCTGGAT
ATGTCCAAACATAATCAACATGCTCATCAAATTCTTTCCAGCATTGAACA
GATACAAGAATAGggttatattttttctttacatAATGAATAACCGCTCC
GAGGTCAGGCTTATCTTCAATGAAAGTATCACCACCATACAAAACTAAAC
ATTTTTGATATTCTGATTCAGTTCTTTTAACAATTTCTGAAGGTTTTAGC
CCAACAATGGTCTCAATAGCATGACTTGTTTTTAGCTTAACAGCATCAAG
GTCTTTGTATTGCAGTTTCGGACCATTTCCAATGAACAAGCAAACTTTTT
GTATATGATGTAGCTTTAACAGTTGGTGAAAATCAttgaaagtctttata
aaaTTGATGCTCATTTTTTGCTAAAGTTTTGTTCAGAAATGGACACTTAA
AAATTTTTTACTAACATACTTGCCCATGAAATATCCAGATTTTCTACCTT
ATTGAGTTGGTTTAATCGTGGCAACCCTCATCTAATCCACCCTTTATCCT
AAACACCCTTTATCTTTTACCAATGCCTTTCTTTAATATAGggaatgata
gaaag Coding sequence (CDS) from alignment at scaffold_350:115200..116504 >TCONS_00060983 ID=TCONS_00060983|Name=TCONS_00060983|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_350:115200..116504 (Clytia hemisphaerica)
tcaaaaagaatattttggtAAAGCTTCTATGTTTACAACATTAAGTTTTT
GTTTCACAGAGAAGTCTCTCTCTTTTGAACCAACCCGTCCTCGAGCATCA
ACATTGAAAACAGCAGTCAACATTTTTTGGATTTCCTCACTCAAATAGAC
ACTTGTCCCTCCAACTGGCTTCCCTTTTTCATCAAATCCACCGTAAATTA
CCCTCCCTTGATCAGAGATCTGTTCTGGATATGTCCAAACATAATCAACA
TGCTCATCAAATTCTTTCCAGCATTGAACAGATACAAGAATAGggttata
ttttttctttacatAATGAATAACCGCTCCGAGGTCAGGCTTATCTTCAA
TGAAAGTATCACCACCATACAAAACTAAACATTTTTGATATTCTGATTCA
GTTCTTTTAACAATTTCTGAAGGTTTTAGCCCAACAATGGTCTCAATAGC
ATGACTTGTTTTTAGCTTAACAGCATCAAGGTCTTTGTATTGCAGTTTCG
GACCATTTCCAATGAACAAGCAAACTTTTTGTATATGATGTAGCTTTAAC
AGTTGGTGAAAATCAttgaaagtctttataaaaTTGATGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060983-exon-scaffold_350-1491911889:115200..116504 | TCONS_00060983-exon-scaffold_350-1491911889:115200..116504 | Clytia hemisphaerica | exon |
| TCONS_00060983-exon-scaffold_350-1510915933:115200..116504 | TCONS_00060983-exon-scaffold_350-1510915933:115200..116504 | Clytia hemisphaerica | exon |
| TCONS_00060983-exon-scaffold_350-1575043694:115200..116504 | TCONS_00060983-exon-scaffold_350-1575043694:115200..116504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:115200..116504 . |
Blast
The following BLAST results are available for this feature:
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