TCONS_00060979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060979
Unique NameTCONS_00060979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060979 ID=TCONS_00060979|Name=TCONS_00060979|organism=Clytia hemisphaerica|type=transcript|length=593bp
ATTCAGCAAGTGAGTTCAGCAATAAAATGAGCTATTTTGATGTTGAGTCT
GAAAATtgactcacagctctgacctTTAAAGATACCTCAAATTTAAATAA
GAAGACAGAGTCTCCTCTCTAAGTCTAACAAAGTTCAAGAGCCATTTTTA
TTAAAGTTTTGGTTCAAACTTTAGATTGTCTCCTAGTCTCCACCACTAAC
CTAAATGGGAATAATTCACTCAATTTGTTCTGTTTGTTTGGGAAAACTCT
TAGGAAGTTGAAAAGTGACTGAATTTTTGGCGAAGGCGTACGATGGCCAg
tgaaagttgaaagttgaagcttcaaattttaagatattccaCAAAAAGAA
GCAATTTCACCGTGAAATTATCttgtttaaaattgaaaaatctgtGTAAA
CCATCCATACAGAAGTTCCAACACAATCAGGAAGCCCTCATAAAGTTATG
TTGCAAGGAGCATAGTAGGTTTCATCACAGCGCAGAAATAAAACAAGGTA
ATATTGTGGGCTATTGTGGGCTATTGTTTGCCAtgcttagattatctaaa
aaagtTCTTACCTTACAAGATAGTGAAAAAACTTGGCTAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_350:21420..22012

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060979 ID=TCONS_00060979|Name=TCONS_00060979|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at scaffold_350:21420..22012 (Clytia hemisphaerica)
AAATTAGCCAAGTTTTTTCACTATCTTGTAAGGTAAGAacttttttagat
aatctaagcaTGGCAAACAATAGCCCACAATAGCCCACAATATTACCTTG
TTTTATTTCTGCGCTGTGATGAAACCTACTATGCTCCTTGCAACATAACT
TTATGAGGGCTTCCTGATTGTGTTGGAACTTCTGTATGGATGGTTTACac
agatttttcaattttaaacaaGATAATTTCACGGTGAAATTGCTTCTTTT
TGtggaatatcttaaaatttgaagcttcaactttcaactttcacTGGCCA
TCGTACGCCTTCGCCAAAAATTCAGTCACTTTTCAACTTCCTAAGAGTTT
TCCCAAACAAACAGAACAAATTGAGTGAATTATTCCCATTTAGGTTAGTG
GTGGAGACTAGGAGACAATCTAAAGTTTGAACCAAAACTTTAATAAAAAT
GGCTCTTGAACTTTGTTAGACTTAGAGAGGAGACTCTGTCTTCTTATTTA
AATTTGAGGTATCTTTAAaggtcagagctgtgagtcaATTTTCAGACTCA
ACATCAAAATAGCTCATTTTATTGCTGAACTCACTTGCTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038279XLOC_038279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060979-exon-scaffold_350-1491911889:21420..22012TCONS_00060979-exon-scaffold_350-1491911889:21420..22012Clytia hemisphaericaexon
TCONS_00060979-exon-scaffold_350-1510915933:21420..22012TCONS_00060979-exon-scaffold_350-1510915933:21420..22012Clytia hemisphaericaexon
TCONS_00060979-exon-scaffold_350-1575043694:21420..22012TCONS_00060979-exon-scaffold_350-1575043694:21420..22012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:21420..22012 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0900948	0.418435	0.30703	0.124593	0	0.237564	0.111202	0.0778552	0	0	0	0.0614457	0	0	0	0.277427	0.0710885	0	0	0.0893279	0.130713	0.105933	0	0	0	0.126685	0.270403	0.205091	0.313433
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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