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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060974 ID=TCONS_00060974|Name=TCONS_00060974|organism=Clytia hemisphaerica|type=transcript|length=2060bp
CTTTGCTGTCTTTAATTCACGGAGATACTTCCGAAAAGGGAGCACAACTG
AAAgcctaaagtaaaaattttagaaaaatctgaATCAATATGATGAGAAA
TTgtattattttgaaatcttttcgaATCTTTCCTTAGTCTTGTTCAATAT
ATCTTGTTTTCTTGACGGCTTGCTATCAATCGGTGCAGTAGAACCGAACC
CCAACCCTTTGTTTTTTCCATGCACTTGCACGCCAATTGGCTCTGCAATA
CCTTGTTGTGATTTGCCAAGCCCTTCGCCAGATTTCCATCCCATTTTAGC
CAGCATCTTATGTCCGATATTCTCATCAGATATTTCTTTATGTACAGATG
CTTTTTCGACTGGTCTCAAAATATTCTCATAAGGATCACTCCCGACTTCC
TTACGACGTCTTGCTGCACGATCGGGAACAGATTCGATCAATTTTTTAGG
TATGTAGCCTTTGGATAAACCATATTTTTTCATCATACTTTTGACTTCAT
GTTTTCTCTGTTTATTCAAATCTTCCCTGGTCGCCTTCTCTTTTTCAGCT
TCTAGGATGGCTTGTATATTACCGGGCTCGCAATCAAAACACGTCTCGTT
TCCAGTATGGACGTGAAAAGAAATTGTAGTTTCGCCAATTCGAATAAAAT
CACGATGTGTGACTTCTATAGGTTCAGATTCACATCTAGCATCCGCTATT
CGTTCATCATTGATATAAGTGccattttgagttttcaaatcttgtataaa
aaacgttttgctttcattttcatataGGATCTTAGCATGAGAGCGACTGG
CGAGCTCATCATCAGCTAAACAAATAGTATTTGAGGGGTCTTTCCCAATG
CTTCCTCCCTGACAAGTCACTATGTATAAAGAACCAACATCAACTGATTC
GGATTTGACGATCATAGCCCTGATGCACGGGTCAATAACTGGAGTAGGAC
CTGCAGGTGACACAGGTTCAGAACGAATTTCACCATCTGATAGTTGGCCA
TCTTTCTGATCATTCGAGTCAGATTCATCTGTCTTTTCCTCAGCAACTTT
AATTTGGGAGTGAAATATATACGTTTCTTTTTCTTGATCGTAGTAATAGT
ATACACCATTCTTGTGGTCATAGTACAGCTGACTGTTTGGATCATAATAC
ATTCCACTTTGCCAGTTGTAATACATTCCAGAACTTTCATCGTAAGCAAA
TCCAGATTTGGACATTGCTTCTTCTGCAGCATTTCTGAGCTCTTCTTCAA
TATTCAAAGTACCTCCCTCTTTAGTTGTCTCATCTTCCTCTTTCAGATTT
GGTGGCTCTACAATTTTTATTCTCTCGGTATTTAGTTTGTCCACCTTCCC
ATTTTCAGAAATGGTAGAGTTNTTCTTCTGTTGTATCATCTTCCTCTTTC
AGATTTGGTGGCTCTACAACTTTTTCTCTCTCGGTATTTAGTTTCTCCAC
CTTTCCATTTTCAGAAACGGTAGAGTTGTCAGTTTCTTTTTTCTCCTCCT
TAACAATTTTCTCAATATCCGTTCGCTTTTGTTTACAAATATTACTAGAT
TCTTTATTAGAAGATTTACCATTGGGCTTTTGAACAATGTCAGTTTTTGG
GATTTGATgagtttttgtcaattttcggcGAGTTGAAAGCTTCTTGGCGG
AAGTAGAATCTCCATAAACAACAGCTTCTTTCATTTTAGTAACACTTTCA
GAGGGAGCATCTTTAGGCTTAAATTCATCATTATCATGCTTCAGTGTTTT
AATTTCCACATTCAATTCATTTAATCTCTGTGACATTTGATTGTTGAATT
CAGTCATTTGTTGCATTTGTGCGTAGACTGTTGATTGCCATTGCTTTGAC
TCCTCTAGAGATTTGTATAAAGCATGGACAGTTTGTTTAAGTTCATCTat
ctcattttcatttttcttgctGTTTTCCCCAGCCCTCTTCAATTCAAGCC
TCATTCTTTTGATCAAATCTTTCTCTTCTAATTCCTCAGACTCTGGaaga
taaattttgaaaaaaatattgattaatttcaaactttaatgAAACTTGTA
TATGGTGTAT Run BLAST on NCBI transcript from alignment at scaffold_350:139131..141379- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060974 ID=TCONS_00060974|Name=TCONS_00060974|organism=Clytia hemisphaerica|type=transcript|length=2249bp|location=Sequence derived from alignment at scaffold_350:139131..141379- (Clytia hemisphaerica)
CTTTGCTGTCTTTAATTCACGGAGATACTTCCGAAAAGGGAGCACAACTG
AAAGCCTAAAGTAAAAATTTTAGAAAAATCTGAATCAATATGATGAGAAA
TTGTATTATTTTGAAATCTTTTCGAATCTTTCCTTAGTCTTGTTCAATAT
ATCTTGTTTTCTTGACGGCTTGCTATCAATCGGTGCAGTAGAACCGAACC
CCAACCCTTTGTTTTTTCCATGCACTTGCACGCCAATTGGCTCTGCAATA
CCTTGTTGTGATTTGCCAAGCCCTTCGCCAGATTTCCATCCCATTTTAGC
CAGCATCTTATGTCCGATATTCTCATCAGATATTTCTTTATGTACAGATG
CTTTTTCGACTGGTCTCAAAATATTCTCATAAGGATCACTCCCGACTTCC
TTACGACGTCTTGCTGCACGATCGGGAACAGATTCGATCAATTTTTTAGG
TATGTAGCCTTTGGATAAACCATATTTTTTCATCATACTTTTGACTTCAT
GTTTTCTCTGTTTATTCAAATCTTCCCTGGTCGCCTTCTCTTTTTCAGCT
TCTAGGATGGCTTGTATATTACCGGGCTCGCAATCAAAACATGTCTCGTT
TCCAGTATGAANAGTCGCCTTCTCTTTTTCTGCTTCTAGAATGGCTTGTA
TATTACCAGGCTCGCAATCAAAACACGTCTCGTTTCCAGTATGGACGTGA
AAAGAAATTGTAGTTTCGCCAATTCGAATAAAATCACGATGTGTGACTTC
TATAGGTTCAGATTCACATCTAGCATCCGCTATTCGTTCATCATTGATAT
AAGTGCCATTTTGAGTTTTCAAATCTTGTATAAAAAACGTTTTGCTTTCA
TTTTCATATAGGATCTTAGCATGAGAGCGACTGGCGAGCTCATCATCAGC
TAAACAAATAGTATTTGAGGGGTCTTTCCCAATGCTTCCTCCCTGACAAG
TCACTATGTATAAAGAACCAACATCAACTGATTCGGATTTGACGATCATA
GCCCTGATGCACGGGTCAATAACTGGAGTAGGACCTGCAGGTGACACAGG
TTCAGAACGAATTTCACCATCTGATAGTTGGCCATCTTTCTGATCATTCG
AGTCAGATTCATCTGTCTTTTCCTCAGCAACTTTAATTTGGGAGTGAAAT
ATATACGTTTCTTTTTCTTGATCGTAGTAATAGTATACACCATTCTTGTG
GTCATAGTACAGCTGACTGTTTGGATCATAATACATTCCACTTTGCCAGT
TGTAATACATTCCAGAACTTTCATCGTAAGCAAATCCAGATTTGGACATT
GCTTCTTCTGCAGCATTTCTGAGCTCTTCTTCAATATTCAAAGTACCTCC
CTCTTTAGTTGTCTCATCTTCCTCTTTCAGATTTGGTGGCTCTACAATTT
TTATTCTCTCGGTATTTAGTTTGTCCACCTTCCCATTTTCAGAAATGGTA
GAGTTNTTCTTCTGTTGTATCATCTTCCTCTTTCAGATTTGGTGGCTCTA
CAACTTTTTCTCTCTCGGTATTTAGTTTCTCCACCTTTCCATTTTCAGAA
ACGGTAGAGTTGTCAGTTTCTTTTTTCTCCTCCTTAACAATTTTCTCAAT
ATCCGTTCGCTTTTGTTTACAAATATTACTAGATTCTTTATTAGAAGATT
TACCATTGGGCTTTTGAACAATGTCAGTTTTTGGGATTTGATGAGTTTTT
GTCAATTTTCGGCGAGTTGAAAGCTTCTTGGCGGAAGTAGAATCTCCATA
AACAACAGCTTCTTTCATTTTAGTAACACTTTCAGAGGGAGCATCTTTAG
GCTTAAATTCATCATTATCATGCTTCAGTGTTTTAATTTCCACATTCAAT
TCATTTAATCTCTGTGACATTTGATTGTTGAATTCAGTCATTTGTTGCAT
TTGTGCGTAGACTGTTGATTGCCATTGCTTTGACTCCTCTAGAGATTTGT
ATAAAGCATGGACAGTTTGTTTAAGTTCATCTATCTCCTTTTCATTTTTC
TTGCTGTTNGCGTAGACTGTCGATTGCCATTGCTTTGACTCCTCAAGAGA
TTTGTATAAAACATGGACAGTTTGTTTAAGTTCATCTATCTCATTTTCAT
TTTTCTTGCTGTTTTCCCCAGCCCTCTTCAATTCAAGCCTCATTCTTTTG
ATCAAATCTTTCTCTTCTAATTCCTCAGACTCTGGAAGATAAATTTTGAA
AAAAATATTGATTAATTTCAAACTTTAATGAAACTTGTATATGGTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060974-exon-scaffold_350-1575043694:140805..141379 | TCONS_00060974-exon-scaffold_350-1575043694:140805..141379 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1575043694:139423..140720 | TCONS_00060974-exon-scaffold_350-1575043694:139423..140720 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1575043694:139131..139317 | TCONS_00060974-exon-scaffold_350-1575043694:139131..139317 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1510915933:140805..141379 | TCONS_00060974-exon-scaffold_350-1510915933:140805..141379 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1510915933:139423..140720 | TCONS_00060974-exon-scaffold_350-1510915933:139423..140720 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1510915933:139131..139317 | TCONS_00060974-exon-scaffold_350-1510915933:139131..139317 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1491911889:140805..141379 | TCONS_00060974-exon-scaffold_350-1491911889:140805..141379 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1491911889:139423..140720 | TCONS_00060974-exon-scaffold_350-1491911889:139423..140720 | Clytia hemisphaerica | exon |
| TCONS_00060974-exon-scaffold_350-1491911889:139131..139317 | TCONS_00060974-exon-scaffold_350-1491911889:139131..139317 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:139131..141379 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00060974 vs. Swiss-Prot (Human)
Match: AGGF1 (Angiogenic factor with G patch and FHA domains 1 OS=Homo sapiens GN=AGGF1 PE=1 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 7.857e-37 Identity = 110/322 (34.16%), Postives = 181/322 (56.21%), Query Frame = -3
Query: 118 EKTDESDSNDQKDGQLSDGEIRSEPVSPAGPTPVIDPCIRAMIVKSESVDVGSLYIVTC-QGGSIGKDPSNTICLADDEL-ASRSHAKILYENESKTFFIQDLKTQNGTYINDERIADARCESEPIEVTHRDFIRIGETTISFHVHTGNETCFDCEPGNIQAILEAEKE-------KATREDLNKQRKHEVKSMMKKYGLSKG-YIPKKLIES--VPDRAARRRKEVGSDPYENILRPVEKASVHKEISDENIGHKMLAKMGWKSGEGLGKSQQGIAEPIGVQVHGKNKGLGFGSTAPIDSKPSRKQDI---LNKTKERFEK 1038
E TD + + S+G + +E + PCIR ++++S + +GSL+I+T +IG++ L E+ S+ HA+I ++++ +++ + D +QNGT +N ++I + + +P + H D ++IGET +SFH+H G++TC CEPG ++A L +K+ ++E+ +R+ E+K + KYGL Y +K +++ DRA +RR++VGS+ R ASVH EI+D N G KML KMGWK GEGLGK G+ PI +Q+ + GLG G KPS +D+ NK K+ ++K
Sbjct: 372 EITDSQTEDSYDEAITSEGNVTAEDSEDEDEDKIWPPCIRVIVIRSPVLQIGSLFIITAVNPATIGREKDMEHTLRIPEVGVSKFHAEIYFDHDLQSYVLVDQGSQNGTIVNGKQILQPKTKCDPYVLEHGDEVKIGETVLSFHIHPGSDTCDGCEPGQVRAHLRLDKKDESFVGPTLSKEEKELERRKELKKIRVKYGLQNTEYEDEKTLKNPKYKDRAGKRREQVGSEG--TFQRDDAPASVHSEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLGTG-------KPSSFEDVHLLQNKNKKNWDK 684 HSP 2 Score: 82.0333 bits (201), Expect = 5.089e-16 Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = -3
Query: 1045 NIEEELRNAAEEAMSKSGFAYDESSGMYYNWQSGMYYDPNSQLYYDHKNGVYYYYDQEKETYIFHSQIKV 1254
++ E LR AAE A+S++GF+YDE++G+Y++ +G YYD +QLYYD G+YYY D E Y FHS++ +
Sbjct: 189 SLAESLRAAAEAAVSQTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDL 258
The following BLAST results are available for this feature:
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