TCONS_00060972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060972
Unique NameTCONS_00060972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060972 ID=TCONS_00060972|Name=TCONS_00060972|organism=Clytia hemisphaerica|type=transcript|length=1733bp
attattttgaaatcttttcgaATCTTTCCTTAGTCTTGTTCAATATATCT
TGTTTTCTTGACGGCTTGCTATCAATCGGTGCAGTAGAACCGAACCCCAA
CCCTTTGTTTTTTCCATGCACTTGCACGCCAATTGGCTCTGCAATACCTT
GTTGTGATTTGCCAAGCCCTTCGCCAGATTTCCATCCCATTTTAGCCAGC
ATCTTATGTCCGATATTCTCATCAGATATTTCTTTATGTACAGATGCTTT
TTCGACTGGTCTCAAAATATTCTCATAAGGATCACTCCCGACTTCCTTAC
GACGTCTTGCTGCACGATCGGGAACAGATTCGATCAATTTTTTAGGATCT
TAGCATGAGAGCGACTGGCGAGCTCATCATCAGCTAAACAAATAGTATTT
GAGGGGTCTTTCCCAATGCTTCCTCCCTGACAAGTCACTATGTATAAAGA
ACCAACATCAACTGATTCGGATTTGACGATCATAGCCCTGATGCACGGGT
CAATAACTGGAGTAGGACCTGCAGGTGACACAGGTTCAGAACGAATTTCA
CCATCTGATAGTTGGCCATCTTTCTGATCATTCGAGTCAGATTCATCTGT
CTTTTCCTCAGCAACTTTAATTTGGGAGTGAAATATATACGTTTCTTTTT
CTTGATCGTAGTAATAGTATACACCATTCTTGTGGTCATAGTACAGCTGA
CTGTTTGGATCATAATACATTCCACTTTGCCAGTTGTAATACATTCCAGA
ACTTTCATCGTAAGCAAATCCAGATTTGGACATTGCTTCTTCTGCAGCAT
TTCTGAGCTCTTCTTCAATATTCAAAGTACCTCCCTCTTTAGTTGTCTCA
TCTTCCTCTTTCAGATTTGGTGGCTCTACAATTTTTATTCTCTCGGTATT
TAGTTTGTCCACCTTCCCATTTTCAGAAATGGTAGAGTTNTTCTTCTGTT
GTATCATCTTCCTCTTTCAGATTTGGTGGCTCTACAACTTTTTCTCTCTC
GGTATTTAGTTTCTCCACCTTTCCATTTTCAGAAACGGTAGAGTTGTCAG
TTTCTTTTTTCTCCTCCTTAACAATTTTCTCAATATCCGTTCGCTTTTGT
TTACAAATATTACTAGATTCTTTATTAGAAGATTTACCATTGGGCTTTTG
AACAATGTCAGTTTTTGGGATTTGATgagtttttgtcaattttcggcGAG
TTGAAAGCTTCTTGGCGGAAGTAGAATCTCCATAAACAACAGCTTCTTTC
ATTTTAGTAACACTTTCAGAGGGAGCATCTTTAGGCTTAAATTCATCATT
ATCATGCTTCAGTGTTTTAATTTCCACATTCAATTCATTTAATCTCTGTG
ACATTTGATTGTTGAATTCAGTCATTTGTTGCATTTGTGCGTAGACTGTT
GATTGCCATTGCTTTGACTCCTCTAGAGATTTGTATAAAGCATGGACAGT
TTGTTTAAGTTCATCTATctccttttcatttttcttgctGTTNGCGTAGA
CTGTCGATTGCCATTGCTTTGACTCCTCAAGAGATTTGTATAAAACATGG
ACAGTTTGTTTAAGTTCATCTatctcattttcatttttcttgctGTTTTC
CCCAGCCCTCTTCAATTCAAGCCTCATTCTTTTGATCAAATCTTTCTCTT
CTAATTCCTCAGACTCTGGaagataaattttgaaaaaaatattgattaat
ttcaaactttaatgAAACTTGTATATGGTGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_350:139131..141275-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060972 ID=TCONS_00060972|Name=TCONS_00060972|organism=Clytia hemisphaerica|type=transcript|length=2145bp|location=Sequence derived from alignment at scaffold_350:139131..141275- (Clytia hemisphaerica)
ATTATTTTGAAATCTTTTCGAATCTTTCCTTAGTCTTGTTCAATATATCT TGTTTTCTTGACGGCTTGCTATCAATCGGTGCAGTAGAACCGAACCCCAA CCCTTTGTTTTTTCCATGCACTTGCACGCCAATTGGCTCTGCAATACCTT GTTGTGATTTGCCAAGCCCTTCGCCAGATTTCCATCCCATTTTAGCCAGC ATCTTATGTCCGATATTCTCATCAGATATTTCTTTATGTACAGATGCTTT TTCGACTGGTCTCAAAATATTCTCATAAGGATCACTCCCGACTTCCTTAC GACGTCTTGCTGCACGATCGGGAACAGATTCGATCAATTTTTTAGGTATG TAGCCTTTGGATAAACCATATTTTTTCATCATACTTTTGACTTCATGTTT TCTCTGTTTATTCAAATCTTCCCTGGTCGCCTTCTCTTTTTCAGCTTCTA GGATGGCTTGTATATTACCGGGCTCGCAATCAAAACATGTCTCGTTTCCA GTATGAANAGTCGCCTTCTCTTTTTCTGCTTCTAGAATGGCTTGTATATT ACCAGGCTCGCAATCAAAACACGTCTCGTTTCCAGTATGGACGTGAAAAG AAATTGTAGTTTCGCCAATTCGAATAAAATCACGATGTGTGACTTCTATA GGTTCAGATTCACATCTAGCATCCGCTATTCGTTCATCATTGATATAAGT GCCATTTTGAGTTTTCAAATCTTGTATAAAAAACGTTTTGCTTTCATTTT CATATAGGATCTTAGCATGAGAGCGACTGGCGAGCTCATCATCAGCTAAA CAAATAGTATTTGAGGGGTCTTTCCCAATGCTTCCTCCCTGACAAGTCAC TATGTATAAAGAACCAACATCAACTGATTCGGATTTGACGATCATAGCCC TGATGCACGGGTCAATAACTGGAGTAGGACCTGCAGGTGACACAGGTTCA GAACGAATTTCACCATCTGATAGTTGGCCATCTTTCTGATCATTCGAGTC AGATTCATCTGTCTTTTCCTCAGCAACTTTAATTTGGGAGTGAAATATAT ACGTTTCTTTTTCTTGATCGTAGTAATAGTATACACCATTCTTGTGGTCA TAGTACAGCTGACTGTTTGGATCATAATACATTCCACTTTGCCAGTTGTA ATACATTCCAGAACTTTCATCGTAAGCAAATCCAGATTTGGACATTGCTT CTTCTGCAGCATTTCTGAGCTCTTCTTCAATATTCAAAGTACCTCCCTCT TTAGTTGTCTCATCTTCCTCTTTCAGATTTGGTGGCTCTACAATTTTTAT TCTCTCGGTATTTAGTTTGTCCACCTTCCCATTTTCAGAAATGGTAGAGT TNTTCTTCTGTTGTATCATCTTCCTCTTTCAGATTTGGTGGCTCTACAAC TTTTTCTCTCTCGGTATTTAGTTTCTCCACCTTTCCATTTTCAGAAACGG TAGAGTTGTCAGTTTCTTTTTTCTCCTCCTTAACAATTTTCTCAATATCC GTTCGCTTTTGTTTACAAATATTACTAGATTCTTTATTAGAAGATTTACC ATTGGGCTTTTGAACAATGTCAGTTTTTGGGATTTGATGAGTTTTTGTCA ATTTTCGGCGAGTTGAAAGCTTCTTGGCGGAAGTAGAATCTCCATAAACA ACAGCTTCTTTCATTTTAGTAACACTTTCAGAGGGAGCATCTTTAGGCTT AAATTCATCATTATCATGCTTCAGTGTTTTAATTTCCACATTCAATTCAT TTAATCTCTGTGACATTTGATTGTTGAATTCAGTCATTTGTTGCATTTGT GCGTAGACTGTTGATTGCCATTGCTTTGACTCCTCTAGAGATTTGTATAA AGCATGGACAGTTTGTTTAAGTTCATCTATCTCCTTTTCATTTTTCTTGC TGTTNGCGTAGACTGTCGATTGCCATTGCTTTGACTCCTCAAGAGATTTG TATAAAACATGGACAGTTTGTTTAAGTTCATCTATCTCATTTTCATTTTT CTTGCTGTTTTCCCCAGCCCTCTTCAATTCAAGCCTCATTCTTTTGATCA AATCTTTCTCTTCTAATTCCTCAGACTCTGGAAGATAAATTTTGAAAAAA ATATTGATTAATTTCAAACTTTAATGAAACTTGTATATGGTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038274XLOC_038274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060972-exon-scaffold_350-1575043694:140931..141275TCONS_00060972-exon-scaffold_350-1575043694:140931..141275Clytia hemisphaericaexon
TCONS_00060972-exon-scaffold_350-1575043694:139131..140518TCONS_00060972-exon-scaffold_350-1575043694:139131..140518Clytia hemisphaericaexon
TCONS_00060972-exon-scaffold_350-1510915933:140931..141275TCONS_00060972-exon-scaffold_350-1510915933:140931..141275Clytia hemisphaericaexon
TCONS_00060972-exon-scaffold_350-1510915933:139131..140518TCONS_00060972-exon-scaffold_350-1510915933:139131..140518Clytia hemisphaericaexon
TCONS_00060972-exon-scaffold_350-1491911889:140931..141275TCONS_00060972-exon-scaffold_350-1491911889:140931..141275Clytia hemisphaericaexon
TCONS_00060972-exon-scaffold_350-1491911889:139131..140518TCONS_00060972-exon-scaffold_350-1491911889:139131..140518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:139131..141275 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.84582e-06 3.06312e-09 0 0 0 0 0 2.58232e-06 0 0 0 0 0 0 0.222173 0 0 0 0 0 0 0 0 0 0 1.10035 0 0 0.266442 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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