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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060955 ID=TCONS_00060955|Name=TCONS_00060955|organism=Clytia hemisphaerica|type=transcript|length=1439bp
ATGTTACTTGCTCCAAAAAAATCttagaagaaagaaaaatctgGTTAACC
TGACGGTGATAACAGCGGTGAAGACAATTCAATGACTTCGTTCGATTGTG
GTGGGGTCCAAGCCCCTAAGGATGTTTCAATCTTTTCTGCAGTGACTTCT
CTTTTGTTATGCATCATCATTTCAATCGGAAATTTCTTGATCATTTGGGT
GATTTATAAAGATCCTTTGAAAAAGTTACGAACACCTTTCACGTATTTCA
TCGTCAATTTAGCGACGGCTGATTTGATCGTTGGAACGATCACATGTCCA
ATTTATGCTTATACACTTATTCTGGAAAGTTTGGGAGGTTTGAGTGATAC
AATGGCTCAAACAATGCATATGACGTTTTTTATCTCCTCGACAGCCAGTA
TTTTAAGTTTAATCGCGTTATCGTTGGATAGATACATCGCGATAGAATTT
CCATTCCGATACAAGTTATATTTTACCGGCAACCGATGCCGGTTGATCAC
CATAGTGATCTGGGTGCTAGCGATTTCTTTATCATGGATTTATATGAAAG
TCGGGTACATTTCGCATTTGATGGTTTTTGCGAACTCTTCTATCGTTATC
gcgttctttattttcatcggAACTTACTTTCGAGCTTACCGATTTTTACG
ACAAGAAACGCAACGTTACCGACAACGAGCGATCACGATCATGAGCACGA
CACAAGAACATTTGAACCGATTAAACAACGAACGACGAGTAACTCGAGTA
TTTTTGACCGTTCTTATTgtatttctttgtacatattgtCCAGCAACCAT
CATGATATATCTTTTACAGTCATTCCCTTCTTGGGATTGTNCCAGCAACC
ATCATGATATATCTTTTACAATCATTCCCTTCTTGGGATTGCACAACCAG
ACACTGGATACGCGATCTTGTCATCTTTTTCATCACAATAAATTCAAGTG
TCAACCCTTTTGTATACACTATCCGTTTAAAGACTTTTCAAACATCTTTA
AGACTTGTTTTGAGTCGAAGCGAATCGATAAACCGACAAGATCGACATTC
GTCAGTATCCTCATCGACGGTAATGACTCATGATTTACATTCGATTAAAC
GGGATAGTGGTTCAACTTTACCTCATCATTTGTAGAAAAATgtggatttt
tctttttggtactGGAAAGAACAATTTCTTACCAATCTCTTTATGATAAG
ATAACATCAAAGTGATTATGAAAATTGTATTtaataaaatagaaaaagaa
tagagcataaaattttaatttctgtaAGATATCTGCTCTTACATGCCAGC
TTGAATAGACTatgaaaattagtttccttgaAATCATCCGTTCTTACACG
CTAGctaggaatatttttcaacgCAAGGGAGATATCGGATTTCCATGCCA
AACATCTATagctttgaccaaattttcagatttccCTAG Run BLAST on NCBI protein sequence of TCONS_00060955-protein >TCONS_00060955-protein ID=TCONS_00060955-protein|Name=TCONS_00060955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MTSFDCGGVQAPKDVSIFSAVTSLLLCIIISIGNFLIIWVIYKDPLKKLR
TPFTYFIVNLATADLIVGTITCPIYAYTLILESLGGLSDTMAQTMHMTFF
ISSTASILSLIALSLDRYIAIEFPFRYKLYFTGNRCRLITIVIWVLAISL
SWIYMKVGYISHLMVFANSSIVIAFFIFIGTYFRAYRFLRQETQRYRQRA
ITIMSTTQEHLNRLNNERRVTRVFLTVLIVFLCTYCPATIMIYLLQSFPS
WDCXSNHHDISFTIIPFLGLHNQTLDTRSCHLFHHNKFKCQPFCIHYPFK
DFSNIFKTCFESKRIDKPTRSTFVSILIDGNDS Run BLAST on NCBI transcript from alignment at scaffold_350:173496..179042+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060955 ID=TCONS_00060955|Name=TCONS_00060955|organism=Clytia hemisphaerica|type=transcript|length=5547bp|location=Sequence derived from alignment at scaffold_350:173496..179042+ (Clytia hemisphaerica)
ATGTTACTTGGTAAGCATAATATTTTTATTCATCCACTGACTTCACCCTT
GTGTTACAAACCTATTAGGATCCCACTACCCACTAAAAAAATTGGCTAAG
ATTTCTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTGGGAA
AAGTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTGGGAAAA
GTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGT
ACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTAC
CCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCC
GTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGT
TGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTGGGAAAAGTACCCGTTG
GGAAAAGTACCCGTTGGGAAAAgtaccctacaatttcaaccccactggaa
CTGATTTGTTTTCACcgtcatttgaaattcaatggaaagcCATTCCAACT
GGATTTGTTTTACCTGGGAACAATAGAATAtctccattgggatttcgata
aaaattttcatcctcactgtgggaagaagttccatcagggctgtgagaca
gggatgtctgACTGTTAAGTATCAAgttttgaaagaagaaagaaataaat
CTTTGGGCCTGTTCTTATATCCAGCCTTTGAAATGAGCGTTCGTTTTCGA
AAGATCCAGGTATTACTAAAGATATTCCCAATAATGGTAGTCtgtttccc
ttttttgtcttcttCAATATCATGAAACTTTCTCACAACATTCCTATCTA
ATTATCACCTTCCCTTGTTATCATGTGACCCTCGTTATGCAATTAAATTG
GTCTTTAACCAATCAAATCCAATCAACTGGGGTATTGTTTTTCAGCTTCC
AAACAATCAGTGTTAATTGCTGAAATCCTATTTAGATAGagctattttgt
tttttcgtcATAATGTACTTGCTAAACCGTTCAAATCCTTAATGTCTGGT
TTAATGTCTCTCTAATGTGCTTGGTGTTTGAGTTATTTTTAACGTATTTA
GTAACGATTACCTCAAGTTACAATTTTTGTCTTTTGAAGATAAGATCTTG
ATAAGATCTCTTAAGTCCGCGCttatgattttcttctttttccggAGTAG
ATTCTACTTGCTGTGAGTTGAGCATGGCGATGGTCACTGAGTTGAGATGA
TGCTAAATTGAACTTCAAAATTGTTGAAAGCTTTCGAATGCTCTTAATGT
TCTCATATTCAATGTTCTTGGTATTTTTTGGTAGAATTTCTTAGCGCGTA
TTTTTCATCTTAGTAAGTTTGATATATTTTAAAGTCTGAGCTTGAATTTT
GGGCCGCTTCAgcctttttctttattcattttcTTATCGATGATAGTTTT
ATGATATCTTTTTTTAAGCTGAAAGACATTCTTGACCTTTGTTAAATTAA
TTTTATAGGAATGAGCATTAGGGGGTTTCGGgagaaaaatatcatttttg
tgCTTTTCAATCAACTCGAGATGATGAGTTTACTTGTGAGAAAGGGTTTT
GTATAACGAGTGTTTTCCATCTTGTTCAGAGGTTGAAATGTTTAGTCACT
ACTGATAATTATATTTTGGGGAATTGTTGTGATGATGAAGATTCgaaatg
gcaaaaatattcaTCGACCATGAGTTGTCAGCATTATCTTGTTAAGACAC
TCACTGTTTCACTATTATTAGTTAGTCGATCTATTGAAAATAAGGTCCAA
AAGATATCTTACGATGCCATGGTTCACAGctcttaaataaaaaacatgga
aaagtactcagtatgttttttttttcgtaccAGTTCATGCAAAGAGAATC
TCTATTGAGAAACAGCGTGATCGTTTCTTTACGTGATTACAAGAGAGTAA
TCACGATGCTAACGTCCAACCTCTAAAAGGTTTAAATGTGAGGGGATGGA
ATTTGAGAGGACCGTTTAATGTTCAATTTATATCATCACTTTGTATATAA
ATTGAATGAGAACGAAAACACTGAAACTAAAAATCTTAAAAGGTTAAACT
TGGTATCTATTTGTAGACAGACTTGTCTTTCGTGTCACATTTCGTTACGT
TACGTGTGCCTAAGGTAAAGTGTTACATTTTGCAGTGTGATATACTTTTT
ATGACCTGTTTTCAACGCTTTGAATTCTTCTTGGTTTTAATAGATGGATG
TTTTCTATAGACGGACTGTAGGGTGGGATTTACTTGGGACATATCACTGG
ACTATCCAAGGATCAAAGGATCAAACAAAGGTTGGAATCAATGAACAGCG
TCAGCTTAATGTCAACActtttggatatctttattccTGTTGCAAAACTT
TAAAATGGAATTTAGAAATAGCGTTTTATTTCACTTAATCACCTATTAAA
CCCGTCTTTTTTTATCGAGATTATATTTCAATGGAATCTCTATTCTGCTT
TGCTTTATTTCTTATTTGTGACTATTagataaaaacttttgcatACTTTA
TACTGGAGGAATGCTGATGGGAAATTAGGCTTGAATCTCATGCTGGTTGC
TGTACGATTTGCATTATTTTAAACTTGTGTGATTAATTTCAAATGACAAT
ACTGACAGTTTGTACGGCGATGTTTGATGAATATTGATTTTTTCCATGTT
GTGTTTATGGTCCGTTTTGTGTTCtgcagaatttcaaaatttattgttgt
aGTTGTTCCTAGCGAATAATGTATAAGACTATTACAATCTCATGGTTTTA
TTAAACTCGtcgaaaatcatttttgaaaatagcaGTGTCTTTTATGGGTG
GACGTGACGAATGAGTTATAGTTTCTTTCTGGAGGTCAGTCGTTCTGCTT
TCTTTTGTGTTAATCTTACGAAAAATTGCATTAACATTTGAAAGGATCAA
taaatccaatgattgtaatGAGATCAACAGTTCTCAAAGCTCAACAGGCC
TCACTGCGGATCATCTACTTTGATTATACTAACTTTCCGTCTGACTATGA
AATTAGCATTTTATTTTGACTTAGACGTTATTCTATACGAGATCAAGCTA
ATCTAGAACAACGTATATAAGAATATCAAGCTTTTTTGCCTCAAAATGGA
CATAttaagatttttaagaaaatacaCCTTAAAGGTCGATTTTTTGCTCA
TatttactcaaatttgactAAATTTTTCCATATGCACTTTAAGAGATCAG
TCTTTATTAAATTAGTTTCTAAAGTATAGGATATCACTTAGGAAACTTCA
CCAAAATCCTCTCAAAGTGCTGACGAACATATATTTTATCGTATCTGATG
CGAGTAAGATCTCCAATAAATCTTCAGCAAAGAGGGCTTTTAGTGGAAAA
TGCTGCATCAAAAGTTTCAATTCCGCTTTTCATTTGGTGGAGGGTTTGAT
GTAAAGAAAAATCGATCTCATTTCGTCAACGGAAAGAGTGATTGGTTCTG
TGTGTCTTTACAATAAATATCTGGATTCTTATTCAATTTGGATGTATTTT
ACTTTGGGCTGACCACTCGCGAGTGTGGCACGATCTTCGGGAGCCTCAgt
tcttttatagttttttttattttttgaatcaaACTTTGGGGTTATCCCGA
TGTGTTTTACCGATTGTACTGGTTGTACGGGTTTCGTTAGAGACGAATCG
TTGTCATTGATTGCTTCAATTTTTAGTAAAACAATTTACTAATTTGACTG
TAAATACTGACTTGATAGACTTTTTTCCGCTCgttttgatgttttgatat
TTGTTCCATTCAAACGAATGATTATTTCTTGCTCATTTGTCAAGGCGGAG
TAATTGCAATATTTAATGACCTGTGACGTCACATGCATTATCATGCCTTT
TATAATTAAGAAAACGTTAAGCTAACCACGGCAACTAGACAATGGCTTAG
TATTGCTTTTTTTGtatctttgatagttagggatGGAGAGTGTTAACAAG
AAGACTGGGAGCTAATAAAGGCTTTTTTTAAACTCCCCCTCTAAGTATTG
ATTACGTCACTCTTCAGTCATATTGTAAATGTAATGATGTAACGTTTGTC
ATTCATGTTTTTTTTCAGCTCCAAAAAAATCttagaagaaagaaaaatct
gGTTAACCTGACGGTGATAACAGCGGTGAAGACAATTCAATGACTTCGTT
CGATTGTGGTGGGGTCCAAGCCCCTAAGGATGTTTCAATCTTTTCTGCAG
TGACTTCTCTTTTGTTATGCATCATCATTTCAATCGGAAATTTCTTGATC
ATTTGGGTGATTTATAAAGATCCTTTGAAAAAGTTACGAACACCTTTCAC
GTATTTCATCGTCAATTTAGCGACGGCTGATTTGATCGTTGGAACGATCA
CATGTCCAATTTATGCTTATACACTTATTCTGGAAAGTTTGGGAGGTTTG
AGTGATACAATGGCTCAAACAATGCATATGACGTTTTTTATCTCCTCGAC
AGCCAGTATTTTAAGTTTAATCGCGTTATCGTTGGATAGATACATCGCGA
TAGAATTTCCATTCCGATACAAGTTATATTTTACCGGCAACCGATGCCGG
TTGATCACCATAGTGATCTGGGTGCTAGCGATTTCTTTATCATGGATTTA
TATGAAAGTCGGGTACATTTCGCATTTGATGGTTTTTGCGAACTCTTCTA
TCGTTATCgcgttctttattttcatcggAACTTACTTTCGAGCTTACCGA
TTTTTACGACAAGAAACGCAACGTTACCGACAACGAGCGATCACGATCAT
GAGCACGACACAAGAACATTTGAACCGATTAAACAACGAACGACGAGTAA
CTCGAGTATTTTTGACCGTTCTTATTgtatttctttgtacatattgtCCA
GCAACCATCATGATATATCTTTTACAGTCATTCCCTTCTTGGGATTGTNC
CAGCAACCATCATGATATATCTTTTACAATCATTCCCTTCTTGGGATTGC
ACAACCAGACACTGGATACGCGATCTTGTCATCTTTTTCATCACAATAAA
TTCAAGTGTCAACCCTTTTGTATACACTATCCGTTTAAAGACTTTTCAAA
CATCTTTAAGACTTGTTTTGAGTCGAAGCGAATCGATAAACCGACAAGAT
CGACATTCGTCAGTATCCTCATCGACGGTAATGACTCATGATTTACATTC
GATTAAACGGGATAGTGGTTCAACTTTACCTCATCATTTGTAGAAAAATg
tggatttttctttttggtactGGAAAGAACAATTTCTTACCAATCTCTTT
ATGATAAGATAACATCAAAGTGATTATGAAAATTGTATTtaataaaatag
aaaaagaatagagcataaaattttaatttctgtaAGATATCTGCTCTTAC
ATGCCAGCTTGAATAGACTatgaaaattagtttccttgaAATCATCCGTT
CTTACACGCTAGctaggaatatttttcaacgCAAGGGAGATATCGGATTT
CCATGCCAAACATCTATagctttgaccaaattttcagatttccCTAG Coding sequence (CDS) from alignment at scaffold_350:173496..179042+ >TCONS_00060955 ID=TCONS_00060955|Name=TCONS_00060955|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_350:173496..179042+ (Clytia hemisphaerica)
ATGACTTCGTTCGATTGTGGTGGGGTCCAAGCCCCTAAGGATGTTTCAAT
CTTTTCTGCAGTGACTTCTCTTTTGTTATGCATCATCATTTCAATCGGAA
ATTTCTTGATCATTTGGGTGATTTATAAAGATCCTTTGAAAAAGTTACGA
ACACCTTTCACGTATTTCATCGTCAATTTAGCGACGGCTGATTTGATCGT
TGGAACGATCACATGTCCAATTTATGCTTATACACTTATTCTGGAAAGTT
TGGGAGGTTTGAGTGATACAATGGCTCAAACAATGCATATGACGTTTTTT
ATCTCCTCGACAGCCAGTATTTTAAGTTTAATCGCGTTATCGTTGGATAG
ATACATCGCGATAGAATTTCCATTCCGATACAAGTTATATTTTACCGGCA
ACCGATGCCGGTTGATCACCATAGTGATCTGGGTGCTAGCGATTTCTTTA
TCATGGATTTATATGAAAGTCGGGTACATTTCGCATTTGATGGTTTTTGC
GAACTCTTCTATCGTTATCgcgttctttattttcatcggAACTTACTTTC
GAGCTTACCGATTTTTACGACAAGAAACGCAACGTTACCGACAACGAGCG
ATCACGATCATGAGCACGACACAAGAACATTTGAACCGATTAAACAACGA
ACGACGAGTAACTCGAGTATTTTTGACCGTTCTTATTgtatttctttgta
catattgtCCAGCAACCATCATGATATATCTTTTACAGTCATTCCCTTCT
TGGGATTGTNCCAGCAACCATCATGATATATCTTTTACAATCATTCCCTT
CTTGGGATTGCACAACCAGACACTGGATACGCGATCTTGTCATCTTTTTC
ATCACAATAAATTCAAGTGTCAACCCTTTTGTATACACTATCCGTTTAAA
GACTTTTCAAACATCTTTAAGACTTGTTTTGAGTCGAAGCGAATCGATAA
ACCGACAAGATCGACATTCGTCAGTATCCTCATCGACGGTAATGACTCAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060955-exon-scaffold_350-1491911889:173496..173505 | TCONS_00060955-exon-scaffold_350-1491911889:173496..173505 | Clytia hemisphaerica | exon |
| TCONS_00060955-exon-scaffold_350-1510915933:173496..173505 | TCONS_00060955-exon-scaffold_350-1510915933:173496..173505 | Clytia hemisphaerica | exon |
| TCONS_00060955-exon-scaffold_350-1575043694:173496..173505 | TCONS_00060955-exon-scaffold_350-1575043694:173496..173505 | Clytia hemisphaerica | exon |
| TCONS_00060955-exon-scaffold_350-1491911889:177614..179042 | TCONS_00060955-exon-scaffold_350-1491911889:177614..179042 | Clytia hemisphaerica | exon |
| TCONS_00060955-exon-scaffold_350-1510915933:177614..179042 | TCONS_00060955-exon-scaffold_350-1510915933:177614..179042 | Clytia hemisphaerica | exon |
| TCONS_00060955-exon-scaffold_350-1575043694:177614..179042 | TCONS_00060955-exon-scaffold_350-1575043694:177614..179042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:173496..179042 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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