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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060953 ID=TCONS_00060953|Name=TCONS_00060953|organism=Clytia hemisphaerica|type=transcript|length=1014bp
AAAGTTTGTGAGAAAAATTCACGGAGCAAGCGACGGCTGATTTGATCGTT
GGACTTGTTACATGTCCTATATACGCCGTCTCACTTATCCAAGAATATTT
GGAGTGTTTAAATGGTGATTTGGCTAAGTTGATgcatatgacatttttta
tttcatgcACAGCAAGTATCTTGAGTTTGATTGCATTATCATTAGATCGT
TCAACATCTGTTCTATGCCCTCTCAAACATTCATCCTACTTCGCTGTCAA
TCGTTGTCGATTCATAACTCTGGGGATCTGGGTTCTATCCATTTCAATCA
CCTTGGTCTACTTAAAAATTGGCTTTCTGTACCAAATGGTGGTTTTTGCC
GGAGCTGCGATAGGAATTTCGTTCATCATTTTACTGGTGACTTGCTTTCT
TGTCTTCAAAAGAACGGAACAACGGAATGAGAATCGACGGCGCTCGAGAG
CGATGAGCAAAGACGATCTGTTGGATATCCAAACAACCGAACGCTGTGTT
TTAACGCACGCTTTTCTCTACGTCATACTTTTCTTCATCGTGACGTATCT
ACCAGCTACCATTATGATTTACCTCTTGGAATTTTTCCCGTCATGGGATT
GTATTGTTCGACATTGGATTCGTGACCTAGCCATTTTTTTCGTCCTTATC
AACTCGTCAGTCAATCCTATCATTTATACCATTCGTTTGAAAAACTTTCG
AAGATCTTTGAGATATTTGTTCTTGAAGAAGAAGCGAGGCGACTCGATGA
ACACATCTCGTACGCGATCGATTCGATCGTCAACTTTTCTATCTTCGACA
ACGAACCTTGACTTTCATTCCACTAGACCCTTAACGAAGTTCGTAAATAC
AGAAAATACAGTAGACTCACTATGAATTTCAGCAGTGTTAATTAAATGAT
TAAAAAACATTGGAATTATTAAAACATTGGTGTTGTTTATATATTCATGT
ATACGTTATTATAATAAGCTTAAAAAAGTTAGTAAAAGAAAAAGCTCAAG
CGGTAATACCGCGC Run BLAST on NCBI protein sequence of TCONS_00060953-protein >TCONS_00060953-protein ID=TCONS_00060953-protein|Name=TCONS_00060953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MHMTFFISCTASILSLIALSLDRSTSVLCPLKHSSYFAVNRCRFITLGIW
VLSISITLVYLKIGFLYQMVVFAGAAIGISFIILLVTCFLVFKRTEQRNE
NRRRSRAMSKDDLLDIQTTERCVLTHAFLYVILFFIVTYLPATIMIYLLE
FFPSWDCIVRHWIRDLAIFFVLINSSVNPIIYTIRLKNFRRSLRYLFLKK
KRGDSMNTSRTRSIRSSTFLSSTTNLDFHSTRPLTKFVNTENTVDSL Run BLAST on NCBI transcript from alignment at scaffold_350:170926..172678+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060953 ID=TCONS_00060953|Name=TCONS_00060953|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at scaffold_350:170926..172678+ (Clytia hemisphaerica)
AAAGTTTGTGAGAAAAATTCACGGAGCAAGGTaagaaaaccctttttttg
tATGAGATTCGGAAGAGGGATTTCGAATACCTAGAGATAACAAGATTCAA
TTATCAAGAAAGTGTGTCTTGATAATTCAATATAAACTGACGCGATTCTA
TGGTTAGTTCTGAGTTAGACGCTTTTTAAATGTAATCCTTAAATAATCTT
AAAGTTTGTTTTGGATTAGTGAAAAAAGCGTGTTTATGTTGTTAAATACA
AGTTCTCGTGtttttaaaatctaattttccaAGAAtagtatcaatttttt
tctttctattttccCTTTCTTGACAGAGTATATAAGTAAGCTAATTTCTA
TGAAACTATTTTCTCTTAATGCCAAAGGGTTTTATGGGACGTACTTAATT
CAACCCAACGTCAGCAAAGTCTATTTATAATCCTGTTTTGACCTAATTGA
TAAGAACTGTTTATTGTAATTGGTTTAATTACCAAAACATTTCACGACAT
TGACGCGACTTGTTTGTTAGTGAGAGAATATAAGTTTGTTTTCCTCTTTG
GACATAATCATTTGAGAGACAGAAATATACGAAGCAAGATGACTTCGTTT
GATTGTAAAGGAGTTCAAGCTCCAAAAGCTGTATCGTTATTTTCAGCGTG
CATGGccattttgttatgttttctaATTACCGTTGGAAATTCAATGATCA
TTTGGGTGATTTATAAAGATCCTTTGAAAAAGCTTAAAACACCTTTCACA
TATTTTATTATCAATCTAGCGACGGCTGATTTGATCGTTGGACTTGTTAC
ATGTCCTATATACGCCGTCTCACTTATCCAAGAATATTTGGAGTGTTTAA
ATGGTGATTTGGCTAAGTTGATgcatatgacattttttatttcatgcACA
GCAAGTATCTTGAGTTTGATTGCATTATCATTAGATCGTTCAACATCTGT
TCTATGCCCTCTCAAACATTCATCCTACTTCGCTGTCAATCGTTGTCGAT
TCATAACTCTGGGGATCTGGGTTCTATCCATTTCAATCACCTTGGTCTAC
TTAAAAATTGGCTTTCTGTACCAAATGGTGGTTTTTGCCGGAGCTGCGAT
AGGAATTTCGTTCATCATTTTACTGGTGACTTGCTTTCTTGTCTTCAAAA
GAACGGAACAACGGAATGAGAATCGACGGCGCTCGAGAGCGATGAGCAAA
GACGATCTGTTGGATATCCAAACAACCGAACGCTGTGTTTTAACGCACGC
TTTTCTCTACGTCATACTTTTCTTCATCGTGACGTATCTACCAGCTACCA
TTATGATTTACCTCTTGGAATTTTTCCCGTCATGGGATTGTATTGTTCGA
CATTGGATTCGTGACCTAGCCATTTTTTTCGTCCTTATCAACTCGTCAGT
CAATCCTATCATTTATACCATTCGTTTGAAAAACTTTCGAAGATCTTTGA
GATATTTGTTCTTGAAGAAGAAGCGAGGCGACTCGATGAACACATCTCGT
ACGCGATCGATTCGATCGTCAACTTTTCTATCTTCGACAACGAACCTTGA
CTTTCATTCCACTAGACCCTTAACGAAGTTCGTAAATACAGAAAATACAG
TAGACTCACTATGAATTTCAGCAGTGTTAATTAAATGATTAAAAAACATT
GGAATTATTAAAACATTGGTGTTGTTTATATATTCATGTATACGTTATTA
TAATAAGCTTAAAAAAGTTAGTAAAAGAAAAAGCTCAAGCGGTAATACCG
CGC Coding sequence (CDS) from alignment at scaffold_350:170926..172678+ >TCONS_00060953 ID=TCONS_00060953|Name=TCONS_00060953|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_350:170926..172678+ (Clytia hemisphaerica)
ATgcatatgacattttttatttcatgcACAGCAAGTATCTTGAGTTTGAT
TGCATTATCATTAGATCGTTCAACATCTGTTCTATGCCCTCTCAAACATT
CATCCTACTTCGCTGTCAATCGTTGTCGATTCATAACTCTGGGGATCTGG
GTTCTATCCATTTCAATCACCTTGGTCTACTTAAAAATTGGCTTTCTGTA
CCAAATGGTGGTTTTTGCCGGAGCTGCGATAGGAATTTCGTTCATCATTT
TACTGGTGACTTGCTTTCTTGTCTTCAAAAGAACGGAACAACGGAATGAG
AATCGACGGCGCTCGAGAGCGATGAGCAAAGACGATCTGTTGGATATCCA
AACAACCGAACGCTGTGTTTTAACGCACGCTTTTCTCTACGTCATACTTT
TCTTCATCGTGACGTATCTACCAGCTACCATTATGATTTACCTCTTGGAA
TTTTTCCCGTCATGGGATTGTATTGTTCGACATTGGATTCGTGACCTAGC
CATTTTTTTCGTCCTTATCAACTCGTCAGTCAATCCTATCATTTATACCA
TTCGTTTGAAAAACTTTCGAAGATCTTTGAGATATTTGTTCTTGAAGAAG
AAGCGAGGCGACTCGATGAACACATCTCGTACGCGATCGATTCGATCGTC
AACTTTTCTATCTTCGACAACGAACCTTGACTTTCATTCCACTAGACCCT
TAACGAAGTTCGTAAATACAGAAAATACAGTAGACTCACTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060953-exon-scaffold_350-1491911889:170926..170955 | TCONS_00060953-exon-scaffold_350-1491911889:170926..170955 | Clytia hemisphaerica | exon |
| TCONS_00060953-exon-scaffold_350-1510915933:170926..170955 | TCONS_00060953-exon-scaffold_350-1510915933:170926..170955 | Clytia hemisphaerica | exon |
| TCONS_00060953-exon-scaffold_350-1575043694:170926..170955 | TCONS_00060953-exon-scaffold_350-1575043694:170926..170955 | Clytia hemisphaerica | exon |
| TCONS_00060953-exon-scaffold_350-1491911889:171695..172678 | TCONS_00060953-exon-scaffold_350-1491911889:171695..172678 | Clytia hemisphaerica | exon |
| TCONS_00060953-exon-scaffold_350-1510915933:171695..172678 | TCONS_00060953-exon-scaffold_350-1510915933:171695..172678 | Clytia hemisphaerica | exon |
| TCONS_00060953-exon-scaffold_350-1575043694:171695..172678 | TCONS_00060953-exon-scaffold_350-1575043694:171695..172678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:170926..172678 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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