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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060941 ID=TCONS_00060941|Name=TCONS_00060941|organism=Clytia hemisphaerica|type=transcript|length=699bp GTGTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATT CGATCTTTGATATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATC ATCCAACACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTC TTGAATCACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTC TTTAGTAAAGAAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACG TAATCGAACTGAATTGCGTCGTAAAAATCGACCGAATGCTAAAAACCGAA CAGACGCTGAAAGAACGCTGGCGAAAGCTCAACACCGTTTATCTAGAGGT AAAGACGTGCAAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACT TTTCGAAGATTTGGATCCTGAAATCCAGGAATGCACGGCAATTAAAACGC TGGGCGGTATTAAACCGTCCTGCggaaaatcaaacaaaacaatCATCCGT AAAGTTCGTagacaaaaacaacaacaacagaaaaAGAAGCGTGAAGAATT AACGATAcagaagaggaagaagaaaagacaagaagctttgaggaagaaaa GAAAGAGAGAAGAATTAGGAAGAATCCAACCTTCGTTGGAGGAACTGGAA GATATCAAACATATTCTGGAAGATAATTTGGAAGATGAGAATGTAGAGG Run BLAST on NCBI protein sequence of TCONS_00060941-protein >TCONS_00060941-protein ID=TCONS_00060941-protein|Name=TCONS_00060941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
VVGCRRLYVYREDMKIRSLISIWLLILLTKDTSSNTLDIKYSKQELVNLL ESLSGGEDSSVPDFLFFSKERLENYTDTKGPPRNRTELRRKNRPNAKNRT DAERTLAKAQHRLSRGKDVQVITRWARILDMLLFEDLDPEIQECTAIKTL GGIKPSCGKSNKTIIRKVRRQKQQQQKKKREELTIQKRKKKRQEALRKKR KREELGRIQPSLEELEDIKHILEDNLEDENVE Run BLAST on NCBI transcript from alignment at scaffold_350:49227..56785+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060941 ID=TCONS_00060941|Name=TCONS_00060941|organism=Clytia hemisphaerica|type=transcript|length=7559bp|location=Sequence derived from alignment at scaffold_350:49227..56785+ (Clytia hemisphaerica) GTGTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATT
CGATCTTTGGTGAGAATATTTTTTCGATTAAAACTTTTTGGTATTTATAC
AGAGGTTCTTTCTTACCGGAAAGATTTCTATCCTATTTGAATATTGAGAT
CTCGGACAGTTTGTGTCAACGGAGCAGACTTAGTTTTGGCCTTTTTTATC
CCCGGATGCCTAAgctcaaaactgaaaaaaaatattacccCATCCATGCG
ATTTTCAGTTATAAATTTGATTTAGATTCTTAAGTTTGCAATATATgtag
gggggggtttcagggggtacccgattccgcaattccgtcaattttttctc
caatttccgtcaaaccgtcttaaattgaaccaaaattccgtcacccaaaa
ttcctttgaaattcaatatttttgtcgaaaattccgcaaattttgaataT
CTTTTactaattccgaaattccgcaaatttttttgctaaattccgttttt
ccgcactaaaattgtctaattttccgtctccgtcagagaacccaatttcc
gtaattccgattccgctcctccgccaaccgtgAAAACCCCCCTATGtaga
ttgcttgaaaaagaaaagttacTTGATTTGTTTCATGCAAATTATACACT
TAATTGTATAAAAGAATAATTCGAGGCCTGTTTtccctaaaatcaaaata
aatcgatCTCGGAAGGTGGTACAATTACAATTACACCACACTACTCTAtg
ctttcatttttgatttttcatctcCGTATATTAACACACCCTGATGTGTC
ACAGACCGGCTGAAACCCCAATCCACTAGAATATGGCTAAATGTTTGCCC
CCGCTAGGAAGAATATCCTACAAGCTCAGTCCCGCTGGGAAATCGACTTT
GAattcactccaaaaccatccccactggattttttaagccTGGAGCAGta
caatttttatccccatcgGGATTTTGATAAGAACTTTTACCCCTGCTGTG
GGATAAAGCTCCACCGAGGCTGTAGGACAGGGGTCTATTAAAACTTAGTA
TCACAAATTATACTTGGGTAAACTAAGTGGAAGTGACCTACCTCTATAAC
AACATGCCATAGAGCAACAACCAAGAGAACGGTTGTAAAATATACTCAAC
ATAATAAACCAAACCAAGAAATCCAGCAAATTAACTTATAAatcacaaaa
agaaaaatttccatTGAGAGCAAATGAGATCGTGGTGAATTAgctttgaa
aacattttaactTTATAGCTGGAATCATTCGGTGTATTTTGTAAATATGA
GACAAAATAAGAGCTTGAAAACTGATACCGCCCTTTCAAATAATagaaag
ttgacaaaaaaatcatttcattttatagCAGGTGTTAATAAATTTTTTGG
TTCGTATTATAAAATGAAGCAAcaataaaatagaataaaatgaaggataa
atttgaaaaagtttttgccTTTAACTGATTTGAAAGTTTTATATGAATAA
GATATGATGAGAAAATacttttgacatatttttttgcttttaccTATTCA
GATATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCATCCAACA
CCTTGGACATCAAGTACAGCAAACAAGAACTTATCAATCTTCTTGAATCA
CTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAA
AGAAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTAATCGAA
CTGAATTGCGTCGTAAAGATCGACCGAATCCTAAAAACCGAACGGACGCT
GAAAGAACGCTGGCGAAAGCTCAACACCGTTTATCAAGAGGTAAAGACGT
GCAGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAG
ACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGGT
ATTAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGTAAAGTTCG
TAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGAtacaga
agaagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGAAGAA
TTAGGAAGAATCCCACCTTCTTTGGAGGAACTGGAAGATATCAAACATAT
TCTGGAAGATAATTTGGAAGATAAGAATGTAgaggaagatgaagaagaag
aaggcgAGAATCGATTCAAGAGGAGTTCAAACCAACCACAAAACGATCAA
CCTGAAACCTCCAATCATCATCGCTCACGAAGAAGCCCCGTACAGAATTT
AGACGTCGTGCGCATGCGTAGATCTTTATCGTATACGTATTCCAATGAAG
GATCGTGTTTCCTTGAAGGTTCGGAAGGGAGTACGAGCGATACTATCCTG
CTTTGTGAAACTTGCTACAAAACGGTGGATTTCGGAGAGAGTGTGTAAGT
TTTCCTTCCTCATCTTCTTTACCTTTGAAGATTAGACTTGGCATgctttg
cttttattttttctcttcttttttgtaTGAATATTTGCCCTGGTGCGTCT
CATTGATGCTTAGCTGTATACCTTACACCATACCTGCCTCGTTGGGGTAG
GGGGACAATAAGCACCCTCTGCTAGAATTTAGAAGGGGAAGGTTATGGCG
ACGATTgctagtttttttcttttatgtaaCTGTTTTCTTTCTATTAGAGT
TCCGCAGTACGCGAATAGCGTTGAATGTTCGGATAGCGCGACCATGTGTA
TCAGTGGAGATGGAACATGCACGCAGAAAGTCATATATTATTCCTTCAAG
AAATTAGTTGATTCCGTATCGAACACTTGGGAAAGCTACCAGCAACCACT
GAATGTCAGCTGTGAATGTGAATGTATCGCGAATTCAATGACTCACATGT
ATATGGTTGGTGACTCAAATTAAAAACTCAACtcgtgaaaaaaaaagact
aaccaaacaaaagattttacaaGAATTGCATAATAAATGCATGATGAACT
ATCCAATTAAGTGGATAGCACTGTGAGAAGTTGAGAAAGCTCTTGAGTTT
AATAATATTTGCATCATTTGACTGATTAGAAATtatattcaataaaatat
ttattaattTAAGCTGGAAAATTTATCGTAAAATATTCAAAGTTTTCTCA
CTCCTCATTTGCTTGTTTAACTACTCTGATAAATTCACCGTGGGCTTCAA
AACGGTTTACAGCCCACTGCATTCTCAAGGGATGAGAGTAATGAGACTGG
GCTATCGATCTATGGGAATAAAGAGAAAATGTATCCCCTTTAAGAAAGAA
TCATCGTCACTTGGTGACGTAACGTTCGTTTAAGAGTATGCAGTCATTAT
TTGACATTGCATGCTCGTTTGGAATCTTGCGACCTTCCATTCTTATTGGT
GTTGAGACAATTGCGTGCTTCTTGTGccctacagtatatggcccccaaaa
cggagagggcccccaaaacggaggttttcattaaaatgaagattctgact
tgtagatttatcggaattaaacgatttttgtttattttgaaagaatgatg
gttatacttaaaaatgagcatgtttttgctggtttgagacggattcaaaa
taacaNcgcgtctaaaggaaatattttaacaccaaaattagataaaaatt
gcataaaactcactctagctccttggatattgaaaataagttatgaaaac
ggggtataggaaactttctacacctaatgtcgttcagaaaatgcaaatac
atctgtgacttagaggctgggtaaaagatatagcatcttgaaggtcaaac
agtattttggagccctagaatcagcattgaaaaaaccgaaaattctaaat
atgagataaatcaaaaaatcttggaattctattcctatcaccttgagtta
atagtttataacaaaaaattaacatgatatataaaatttttcgctgaatc
agcaaaaacagcaaattctgtcattttttgcaaaatataggagaaaaata
tctttaaagcttaatattttcagtttcagttaaactttttttctaaaatt
ttcacagcttattccatacatgaatggaactattttcaatatagatttgt
tttcaaaaacatgattaagacgttgttaaatcaaaattgtcattttaaat
atttctaaattttcagtttggactttgcaatatcgaaaatcttgaaatat
ttcataaaaatcataaattttacatccatcgggtcgtaaatttaggGGAA
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNagcgattgaaaaatattgttgaaattgaaaatt
ttgaaaaagaacttccaggaaataaagtagaggtgttaaaggttttcatg
cagcaaaaatctttgtaaaatctcttttcatatagatttgagagaagttt
caaatttgatcgccgttttgggggccacatactgtagtgCGTCTCGTACC
TTTATGGGTAGTTCATGGGTCCGAAAAAATGATGGTTGGTAGTTGGTTGG
TCCGAGAAAGCGAGAAAAATCACGCATGAAAGAAGCACTTAATTCATCAc
actaaaaaattttttgctttgGGTAACTGAGATACAGGAGACTAAGTTCT
GATGAGTTTAGAAGAGGAGACAAAGTGCCGGGTCCGCTGACAGCTAATAG
ATGAGTATCAAAAGTATAATCATTGTCCTTGCTACATATATGCTCCATTT
AGAGAAGTCTGAATCATAGATAATATAGGACCTGGAGGGGAGGGCACTCA
AGGTAAGAGACCTACCATAGAGTGCGANAGATAATATAGGACCCGGAGGG
GAGGGCACTCGAGGTAAGAGACCTACCGTAGGGTGCGACCCTTCAGGGTA
CATTTTTACGCTTCTCAAAGTGCATTGTAACATGTAAGTGTCAAAATTAG
GAAAAGTGCAAGAAAATACCTTGCAAGAGTATAAAAACCAATCAGATTAG
TCCTATGCCAGTACTTTAAACTAGCTCAGTAAAGCGGAAGTAATTTctct
ttcatcatttttttttttttgcattcccAAACCGGAGgcgttggaaaggt
tttttatAACCAAGGGATTATTCAATTATTCAATAATTAAAGAATATTAA
GAAAGTCGATTCATATTTTTATGAAAGCATCTTTAAATGATTATGTTGGC
CCTATGTTGGAGTTGCTTCTTATGTACTTAATTAGTTTattattttcaca
aaaaaagatgCTTTTATTTCCCGTGCCATGGCCGTGCGATTTCACTCTTT
TCTGttaaaccgttttttttttctttaacacAAATTGTGTGGTTGGCTGT
AGAAGGTTGTGTGTTTATTGAGAAGATATGAAGATTCGATCTTTGGTGAG
AATATTTTTCGATAAAAACTTTTTGGTATTTATACAGAGGTTTTTACTTA
CGGGGAAGATTTCTATCCTATTTTAATGTTGAGATCTCGGAAGGTTTGAG
TCAACGGAGCAGACTTAGTTTTTGCCTTTCCTGTCCCCAGATGCCCAAtc
tcaaaactgaaaaaaaaatattacccCATCCATGCGATTTTCAGTTATAA
ATTTGATTTAGATTCTTAAGTTTGCAATATATGTAGATTGcgtgaaaaag
aaaaggtaCTTGATTTGTTTCATGCAAATTACACTTAATTGTATAAAAGA
ATAATTCGAGGCCTGTTTtccctaaaatcaaaataaatcgatCTCGGAAG
GTGGTACACTTACTCGAtgctttcatttttgatttttcatctcCGTATAT
TAACACACCCTGATGTGTCACAGACCGGCTGAAACCCCAATCCACTAGAA
TCTGGctaaatttttgtccccgctagGAAGAACATCCTACAATCTCAGTC
Ccgctgggaaattgactttgatttcattccaaaaccatccccactggatt
tttcaaGCCTGAAGCAGTataattttcatccttattggTATTTCGATATA
AATTTTTACCCCCGCTGTGGGAAAAAGCTCCACCGAGGCTGTAAGACAAG
GGTTTATTAAAACTTAGTAGCACAAATTATACTTGGGTAAACTAAGTGGA
AGTCACCTACCTCTACAACAACATGCATAGAGCAACAACCAAGAGAACGG
TTGTAGAATATACTCAACATAATAAACCAAACCAAGAAATCCAGCAAATT
AacttaaaaatcacaaaaagaaAGGTTTCCATTGAGAGCTAATGAGATCG
TGGTGAATTAgctttgaaaacattttaactTTGTAGCTGGAATCATTCGG
TGTATTTTGTAAATATGAGACAAAATAAGAGCTTGAAAACTGATACCGCC
CTTTCAAATAATagaaagttgacaaaaaaatcatttcattttatagcagg
tgttaataatttttttgcttcgtaTTATAAAATGAAGCAAcaataaaata
gaataaaatgaaggatgaatttgaaaaagtttttgccTTTAACTGACTTG
AAGTTCTATATGAATAAGATATGATGAGaaaatacttttgaaatatttct
tttgctTTTACCTATTCAGATATCGATCTGGCTGTTGGTCCTCCTGACTA
AAGACACATCATCCAACACCTTGGACATCAAGTACAGCAAACAAGAACTT
GTCAACCTTCTTGAATCACTAAGCGGTGGCGAAGACTCGTCAGTACCTGA
TTTCTTGTTCTTTAGTAAAGAAAGATTGGAAAACTACACTGATACAAAAG
GGCCACCACGTAATCGAACTGAATTGCGTCGTAAAAATCGACCGAATGCT
AAAAACCGAACAGACGCTGAAAGAACGCTGGCGAAAGCTCAACACCGTTT
ATCTAGAGGTAAAGACGTGCAAGTGATCACCAGATGGGCCAGAATATTGG
ACATGTTACTTTTCGAAGATTTGGATCCTGAAATCCAGGAATGCACGGCA
ATTAAAACGCTGGGCGGTATTAAACCGTCCTGCggaaaatcaaacaaaac
aatCATCCGTAAAGTTCGTagacaaaaacaacaacaacagaaaaAGAAGC
GTGAAGAATTAACGATAcagaagaggaagaagaaaagacaagaagctttg
aggaagaaaaGAAAGAGAGAAGAATTAGGAAGAATCCAACCTTCGTTGGA
GGAACTGGAAGATATCAAACATATTCTGGAAGATAATTTGGAAGATGAGA
ATGTAGAGG Coding sequence (CDS) from alignment at scaffold_350:49227..56785+ >TCONS_00060941 ID=TCONS_00060941|Name=TCONS_00060941|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_350:49227..56785+ (Clytia hemisphaerica) GTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATTCG ATCTTTGATATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCAT CCAACACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTT GAATCACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTT TAGTAAAGAAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTA ATCGAACTGAATTGCGTCGTAAAAATCGACCGAATGCTAAAAACCGAACA GACGCTGAAAGAACGCTGGCGAAAGCTCAACACCGTTTATCTAGAGGTAA AGACGTGCAAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTT TCGAAGATTTGGATCCTGAAATCCAGGAATGCACGGCAATTAAAACGCTG GGCGGTATTAAACCGTCCTGCggaaaatcaaacaaaacaatCATCCGTAA AGTTCGTagacaaaaacaacaacaacagaaaaAGAAGCGTGAAGAATTAA CGATAcagaagaggaagaagaaaagacaagaagctttgaggaagaaaaGA AAGAGAGAAGAATTAGGAAGAATCCAACCTTCGTTGGAGGAACTGGAAGA TATCAAACATATTCTGGAAGATAATTTGGAAGATGAGAATGTAGAGGTGG TTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATTCGATCT TTGATATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCATCCAA CACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAAT CACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGT AAAGAAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTAATCG AACTGAATTGCGTCGTAAAAATCGACCGAATGCTAAAAACCGAACAGACG CTGAAAGAACGCTGGCGAAAGCTCAACACCGTTTATCTAGAGGTAAAGAC GTGCAAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGA AGATTTGGATCCTGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCG GTATTAAACCGTCCTGCggaaaatcaaacaaaacaatCATCCGTAAAGTT CGTagacaaaaacaacaacaacagaaaaAGAAGCGTGAAGAATTAACGAT AcagaagaggaagaagaaaagacaagaagctttgaggaagaaaaGAAAGA GAGAAGAATTAGGAAGAATCCAACCTTCGTTGGAGGAACTGGAAGATATC AAACATATTCTGGAAGATAATTTGGAAGATGAGAATGTAGAGGTGGTTGG CTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATTCGATCTTTGA TATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCATCCAACACC TTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAATCACT AAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAAAG AAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTAATCGAACT GAATTGCGTCGTAAAAATCGACCGAATGCTAAAAACCGAACAGACGCTGA AAGAACGCTGGCGAAAGCTCAACACCGTTTATCTAGAGGTAAAGACGTGC AAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAGAT TTGGATCCTGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGGTAT TAAACCGTCCTGCggaaaatcaaacaaaacaatCATCCGTAAAGTTCGTa gacaaaaacaacaacaacagaaaaAGAAGCGTGAAGAATTAACGATAcag aagaggaagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGA AGAATTAGGAAGAATCCAACCTTCGTTGGAGGAACTGGAAGATATCAAAC ATATTCTGGAAGATAATTTGGAAGATGAGAATGTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060941-exon-scaffold_350-1491911889:49227..49285 | TCONS_00060941-exon-scaffold_350-1491911889:49227..49285 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1510915933:49227..49285 | TCONS_00060941-exon-scaffold_350-1510915933:49227..49285 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1575043694:49227..49285 | TCONS_00060941-exon-scaffold_350-1575043694:49227..49285 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1491911889:50778..50834 | TCONS_00060941-exon-scaffold_350-1491911889:50778..50834 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1510915933:50778..50834 | TCONS_00060941-exon-scaffold_350-1510915933:50778..50834 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1575043694:50778..50834 | TCONS_00060941-exon-scaffold_350-1575043694:50778..50834 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1491911889:56203..56785 | TCONS_00060941-exon-scaffold_350-1491911889:56203..56785 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1510915933:56203..56785 | TCONS_00060941-exon-scaffold_350-1510915933:56203..56785 | Clytia hemisphaerica | exon |
TCONS_00060941-exon-scaffold_350-1575043694:56203..56785 | TCONS_00060941-exon-scaffold_350-1575043694:56203..56785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_350 | supercontig | scaffold_350:49227..56785 + |
Blast
The following BLAST results are available for this feature:
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