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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060938 ID=TCONS_00060938|Name=TCONS_00060938|organism=Clytia hemisphaerica|type=transcript|length=566bp
TATCGATCTGGCTGCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAAC
ACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAATC
ACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTA
AAGAAAGATTGGAAAACTATACTGACACAAAAGGGCCACCACGTAATCGA
ACTGAACTGCGTCGTGAAGATCGACCGAATCCTAAAAACCGAACGGATGC
TGAAAGAACGCTGGCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGACG
TGCAGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAA
GACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGG
TATTAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGTAAAGTTC
GTAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGAtacag
aagaagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGAAGA
ATTAGGAAGAATCCCA Run BLAST on NCBI transcript from alignment at scaffold_350:43579..51341+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060938 ID=TCONS_00060938|Name=TCONS_00060938|organism=Clytia hemisphaerica|type=transcript|length=7763bp|location=Sequence derived from alignment at scaffold_350:43579..51341+ (Clytia hemisphaerica)
TATCGATCTGGCTGCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAAC
ACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAATC
ACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTA
AAGAAAGATTGGAAAACTATACTGACACAAAAGGGCCACCACGTAATCGA
ACTGAACTGCGTCGTGAAGATCGACCGAATCCTAAAAACCGAACGGATGC
TGAAAGAACGCTGGCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGACG
TGCAAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAA
GACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGTGG
TATTAAACCAGAAGTGCAGCCCTgcggaaaatcaaaaaaaataatcatcC
GCAAAGTTCGTAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTA
GCGATACAGAGGAAGAAGAAAAGACAAGAAGCTTTGATgaagaagagaaa
gagagaaGAATTAATAAGAATCCAACCCTCGTTGGAGGAATTGGAAGATA
TCAAACATATTCTGGAAGATAATTTGGAAGATGAGAATGCAGAGGAAGAA
CAAGATGAAAATTTAGaggaagatgaagatgaagaaggcgAGAATCGATT
CAAGAGAAGTTCAAACCAACCACAAAACGACCAACCTAAAACCTCCAATC
ATCATCGCTCACGAAGAAGCCTCGTACAGAATTTAGACGTCGTGCGCATG
CGTAGATCTTTGTCGTATACGTATTCTAATGAAGGGTCGTGTTTCGTTGA
AGGTTCGGAAGGGAGTACGAGCGATACTATCCTGCTTTGTGAAACTTGCT
ACAAAACGGTGGATTTCGGAGAGAGTGTGTAAGTTTTCCTTCCTCATTCA
TCTTCTTTTCCTTTGAAGATTAGACTTGGCATGCTTTGCTTTtatttctc
tcttcttttttgTATGAATATTTGCCCTGGTGCGTCTCATTGATGCTTAA
CTGTATACCTTACACCATATCTACCTCGTTGGGGTAGGGGGACAAATAAG
CACCCCCCTGCTAGAATTTAGAAGGTGAAGGTTATGACGACGATTGCTAG
TTTTTGTCTTTCATGtaactgttttcttttttagagtTCCGCAGTACGCG
AATAGCGTTGAATGTTCTGATAGCGCGACCATATGCATTAGTGGAGATGG
AACATGCACGCAGAAGGTCATCTATTACTCCTTCAAGAAATTAGTGGATT
CTGTTTCGAACACTTGGGAAAGCTACCAGCAACCACTGAATGTCAGCTGT
GAATGTGAGTGTATTGCGAATTCGATGACTCACATGTATATGGTTGGTGA
CTCAAATTAAAAACTCAActcgtgaaaaaaaaaaaaaaaaaaaagatttt
acaagAATTGCATAATAAATGCATGATGAACTATCCAATGAAGTGGTTAG
CACTGTGAAAAGTTGAGAAAGCTCTTGAGTTTAATAATTTTTGCATCATT
TGACTGATTAGCAATtatattcaataaaatatttaatttaataataattt
atatAATTATATTAATTTAAGCTGGAAAATTTATCGTAAAATATTCAAAG
TTCTCTCACTCCTCATTTGCTTGTTTAACTACTCTAACAAATTCACCGTG
GGCTTCCAAAACGGTTTACAGCTCACTGCATTCCCAAGGGTTGAGAGTGG
GCTATCGATCTATGGGAATAAAGAGAAAACGTATTCCCTTTAAGAAAGAA
TCATCGTCACTTGGTGACGTAACGTTCGTTTAAGAGTATGCAGTCATTAT
TTGACATTGCATGCTCGTTTGGAATCTTGCGACTTTCCATTCTTATTGGT
GTTCAGACAATTGCGTGCTTCTTGTGCCCTAGTGCGTCTCGTTCCTTTGT
GGGTAGTTCATGGGACCGAAAAAAATGATGGTTGGTAGTTGGTTGGTCCG
AGAaagcaaagatttattatacactggataaacgactcaaaAAACGAGGG
ATAGCGAtcattgtaatttcattgtttcagaaaacaattgctgttctagc
tttgtccgcaaaggacaactgtcatggcggctcgaaggtgtctgatttaa
aaaaatgtttatcagtcttatttttaaaaagttctctagctctttctttc
tgtacatttgcagaaaaaaaagtttgaaagtaagtcGAGTATTCCAAGGC
acatacatttgtgaaatctaatgtgagaaaaacatcattagacaagaaat
tcagccaaaatgcttatagtgacacaaaGTTTTCAatcggaaatatcttt
ccaagactgtcctcGTAAGAGCTGAAATcaacatacataagacttgagtg
tcttggctccactgtggtatgaaaatcctttggaggcacgtggtggcaag
gtgtttttttttaggttgaagtttgaaaatttccggtgtcaacattaaat
ttcttatatacaacacgtcttttgcatctttctcacagcttgaaacgtca
taacgacttattattatcaattaagtggaagaatccgactctcacaggaa
agttttaaatctcttttgggaattggatgagtgattttcgatatgaaatg
caataaaaatgcttcgaaaaatcatttaatgagggaaggagagtgaacaa
tactatcattactgcggacatagctagtacacgagaaatcggcaaaaatc
tgttacttgtatatccagtgtataataaatccttgatcATAtactaaaag
gttttttgcTTTCGGTAACTGAGATACAGGAGACTAAGTTCTGATGAGTT
TAGAAGAGGAGACAAAGTGCCGGGTCCGCTGACAGCTAATAGATGAGTAT
CAAAAGTATAATCATTGTCCTTGCTACATATATGCTCCATTTAGAGAAGT
CTGAATCATAGATAATATAGGACCTGGAGGGGAGGGCACTCAAGGTAAGA
GACCTACCATAGAGTGCGACCCTTAAGGGTACGTTTTTACGCTTCCCAAA
GTGCATTATAACATGTAAGTGTCAAAATTAGGAAAAGTGCAAGAAAATAC
CTTGCATGAGTATAAAAAGTGTGAAGAACAAAGCTTTTTGGGCAAAGTAT
TCCAAAATCTCACCATTATTTGCCCAATAATTTCTTTAAAGGTACaaaat
ttccaagaaaatgcAGAGGCGACTTTTTGCCTGAATTtactaaaatttgg
ctgaattttctTTGTAGGGTCTGATTTTAAAGACCTAATTTTGGCCATAC
ATACGGTAGTTTCCTGATCGAGTGCCCGAGGAGCACGAATccattactct
cgggtacctaatagccgccccccgccccccgctaattaacttttgggaaa
atgtttttgaaagtttcctcttttgtcctaattctgctgtattagcctcc
ttttcaaaaattttccacccaggacagttttattccaaccctcccgctta
ttaagttttgaggtTTTTTCCATACCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNccccccccccccgcttattccaaacccaccggctattaggtaccc
caGAGTAATTAGTGTGGATGTCAGCATCCTCGTGTATGGTTGTTAACTTA
CCAGTGCCTACAACTTCATACCTCCACACTATCCACGCTTGTCCACATTA
AGACCATAAAAATAAGACTTGAAAAAGTGTCACACTCCACTTATTGAAAA
ATctaattattttgatattttgcaaaaaacttaAAGATACCCTTACATTT
CCCAGGCCTTCAATAGGGTTTCCTACTACATTTATTTCACTCGATgtctt
ctttgaaaaaatgtattGTCTTTGGGAGAAAAACATTTCCTGGCtatttg
aagaaactttttcaGGTTctatatttttgatgacgcaTTAGCAAAGCATA
TTACTGGAAAGTGAAATCCACGTAtctatcacaggaaaaaattttcaatt
tccaaggttggaaatttcaagttttcttagttggaaaaaagataaaatcc
aatggaaaaatCCAATCTGGAAATGTGGGACattttccaaggttggaaat
tttgcattttccatggcttggaattttcaaaaatctaggttgaaaaaagc
ctaaatccaaaaagtgatggcagagatgtggaaaaaatgatcttaaacaa
ggtttttgtttttgtgaacagtaactcgctagcctaggctcgatggctcc
cggtcaatctctggTTATTGTTCGCatagatacgtggttgatcttagatc
actgtgcgaactcaccgcgattgaccgaggccgctccgaagagacgcctc
acctgacggaaacttacagcttgactgctcacatattaaggccgctaccc
actcagtATTTTATGGTCGGCGAACAAGGCGCACAGGCTCGGGCGCTTTG
GTCGCTGAACGCTTTTCCCATTCcacacattttttcttttttctattgtt
gatattttttgcacacggtacaagagagttaaatgtctcttctgattggc
tatttaaaaaagaacaatagggaaGCCGCACAGCCtagcaaaaaaagtta
aaaagtttcaactcttgttgCGCTCAAAGCGAGAGCCCACGAAGgcttga
tttatgtaatttatgcaataattaagccGTGCGCCTTGTACGACCATAAA
ATTCCgagtgggtagcggccttttatagcctaatatctaggttagccata
catcaaaacagttttgaacgaaaaatcgcttgtggttttctcaaaggaca
tgtgcagaaaatggttacaaaaacgtaatttctacatgggtttttaacgt
tttccaaactgtttgggagaaacacaaatttccgacccaaaaagtctagt
ctTTCAACCCGAGGTagcaaatttacaaaaatatgtattttcacattgAT
TTTTGACCTTATTTTCgattcccaaactgtttggaaaataaagatttccc
acccaaaaagtcatgttttccaaccagccttggaaaattgtcatttctac
atgggtttttttcacttgatttttcaagggcattggtttattctacaaaa
cctatgggtaatttacgttttccaaatcagcttaaggtaatcgctcaaat
ttccaaccctcaattataaaaccaaaatttccaacccaaaaatattgaat
ttccaaccctGGAAATCGAAAAGTTTTTCCTGtgataattttgagatttt
aaccaatcagattagTCCTATGCCAGTACTTTTAACTAGCTCAGTAAAGC
GGAAGTAATTTctctttcatcatttttttttttgcattcccAAACCGGAG
gcgttggaaaggttttttatAACCAAGGGATTATTCAATTATTCAATCAT
TAAAGAATATTAAGAAAGTCGattcatatttttttgaaagcaTCATTAAA
TGATTATGTTGGCCCTATGTTGGAGTTGCTACTTATGTACTTAATTAGTt
tattattttaacaaaaaaaaatgcttttatttCCCGTGCCATGGCCGTGC
GATTTCACTCTTTTCTGTtaaatcgtttttttttctataacaCAAATTGT
GTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATTCG
ATCTTTGGTGAGAATATTTTTTCGATTAAAACTTTTTGGTATTTATACAG
AGGTTCTTTCTTACCGGAAAGATTTCTATCCTATTTGAATATTGAGATCT
CGGACAGTTTGTGTCAACGGAGCAGACTTAGTTTTGGCCTTTTTTATCCC
CGGATGCCTAAgctcaaaactgaaaaaaaatattacccCATCCATGCGAT
TTTCAGTTATAAATTTGATTTAGATTCTTAAGTTTGCAATATATgtaggg
gggggtttcagggggtacccgattccgcaattccgtcaattttttctcca
atttccgtcaaaccgtcttaaattgaaccaaaattccgtcacccaaaatt
cctttgaaattcaatatttttgtcgaaaattccgcaaattttgaataTCT
TTTactaattccgaaattccgcaaatttttttgctaaattccgtttttcc
gcactaaaattgtctaattttccgtctccgtcagagaacccaatttccgt
aattccgattccgctcctccgccaaccgtgAAAACCCCCCTATGtagatt
gcttgaaaaagaaaagttacTTGATTTGTTTCATGCAAATTATACACTTA
ATTGTATAAAAGAATAATTCGAGGCCTGTTTtccctaaaatcaaaataaa
tcgatCTCGGAAGGTGGTACAATTACAATTACACCACACTACTCTAtgct
ttcatttttgatttttcatctcCGTATATTAACACACCCTGATGTGTCAC
AGACCGGCTGAAACCCCAATCCACTAGAATATGGCTAAATGTTTGCCCCC
GCTAGGAAGAATATCCTACAAGCTCAGTCCCGCTGGGAAATCGACTTTGA
attcactccaaaaccatccccactggattttttaagccTGGAGCAGtaca
atttttatccccatcgGGATTTTGATAAGAACTTTTACCCCTGCTGTGGG
ATAAAGCTCCACCGAGGCTGTAGGACAGGGGTCTATTAAAACTTAGTATC
ACAAATTATACTTGGGTAAACTAAGTGGAAGTGACCTACCTCTATAACAA
CATGCCATAGAGCAACAACCAAGAGAACGGTTGTAAAATATACTCAACAT
AATAAACCAAACCAAGAAATCCAGCAAATTAACTTATAAatcacaaaaag
aaaaatttccatTGAGAGCAAATGAGATCGTGGTGAATTAgctttgaaaa
cattttaactTTATAGCTGGAATCATTCGGTGTATTTTGTAAATATGAGA
CAAAATAAGAGCTTGAAAACTGATACCGCCCTTTCAAATAATagaaagtt
gacaaaaaaatcatttcattttatagCAGGTGTTAATAAATTTTTTGGTT
CGTATTATAAAATGAAGCAAcaataaaatagaataaaatgaaggataaat
ttgaaaaagtttttgccTTTAACTGATTTGAAAGTTTTATATGAATAAGA
TATGATGAGAAAATacttttgacatatttttttgcttttaccTATTCAGA
TATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCATCCAACACC
TTGGACATCAAGTACAGCAAACAAGAACTTATCAATCTTCTTGAATCACT
AAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAAAG
AAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTAATCGAACT
GAATTGCGTCGTAAAGATCGACCGAATCCTAAAAACCGAACGGACGCTGA
AAGAACGCTGGCGAAAGCTCAACACCGTTTATCAAGAGGTAAAGACGTGC
AGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAGAC
TTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGGTAT
TAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGTAAAGTTCGTA
GACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGAtacagaag
aagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGAAGAATT
AGGAAGAATCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060938-exon-scaffold_350-1491911889:43579..43869 | TCONS_00060938-exon-scaffold_350-1491911889:43579..43869 | Clytia hemisphaerica | exon |
| TCONS_00060938-exon-scaffold_350-1510915933:43579..43869 | TCONS_00060938-exon-scaffold_350-1510915933:43579..43869 | Clytia hemisphaerica | exon |
| TCONS_00060938-exon-scaffold_350-1575043694:43579..43869 | TCONS_00060938-exon-scaffold_350-1575043694:43579..43869 | Clytia hemisphaerica | exon |
| TCONS_00060938-exon-scaffold_350-1491911889:51067..51341 | TCONS_00060938-exon-scaffold_350-1491911889:51067..51341 | Clytia hemisphaerica | exon |
| TCONS_00060938-exon-scaffold_350-1510915933:51067..51341 | TCONS_00060938-exon-scaffold_350-1510915933:51067..51341 | Clytia hemisphaerica | exon |
| TCONS_00060938-exon-scaffold_350-1575043694:51067..51341 | TCONS_00060938-exon-scaffold_350-1575043694:51067..51341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:43579..51341 + |
Blast
The following BLAST results are available for this feature:
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