|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060929 ID=TCONS_00060929|Name=TCONS_00060929|organism=Clytia hemisphaerica|type=transcript|length=811bp
ATTCTTTTACCGTTTCTTGATTTCTTTAGAGTATCAGATTATATAGTCGG
TTACTCCTATCTTTATTATGCTTACATTTACAGTGCTATCaaaatgaaat
agaaaataCAACTTGGGAGTGAAAATTAATACAGACCAATCAACATGAGT
GATGTGTTTCAAAGTCACGTTCTTCCCAATGCCAAAGCTGATTTGTCACA
ATCAGAGCTTTTCACCAACGAAGATACTTTAGACAACAAAGATAAGGACT
TCATCAATAATATTTCCAGTAAATCCAGTAAGGATTTGACACCCAAAGAA
CAGGAACGTCTCAAACACATCGTCCGAAAGAACACTCCAGTCTCGACTCG
AATCAAAATCTGGTTATTATTATCTGGTGGTGCAGAAATCACATACCAAG
CTCTTTATAAAGAAACTTGCGAAGAACTCTTCACCCAAGGTGATTTCATC
CCAGATGGTGAAGAAGCTAATAACAAGCAATTCTTAACATACTACCTAAC
AACTGAAGGTGGTAACAAACTTCGTCGTGTACTTTGTGTTATCAAACACC
TGAACCCTGACATCACTTACTGTCCTCTCCTGGAACCAATCATCTCCATC
TTACTGCATTACTTCGATGAAGAAGACACATTCTCTGTCGTTTCTGGCTT
GTTGAGTGGATCTTTTTCAGCACCTTTTATGGACCAAACGAAAATTGAAA
ACGTGACAACTGATGCTACTTTACAAGATTTATTCCTCAAGGTTAATAAA
AAAGGGTTCAACCGATTGAACAGTTTTTTCAAACCGGAAGAATCGACAAA
GAATAAAGTCG Run BLAST on NCBI transcript from alignment at scaffold_35:89654..92269- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060929 ID=TCONS_00060929|Name=TCONS_00060929|organism=Clytia hemisphaerica|type=transcript|length=2616bp|location=Sequence derived from alignment at scaffold_35:89654..92269- (Clytia hemisphaerica)
ATTCTTTTACCGTTTCTTGATTTCTTTAGAGTATCAGATTATATAGTCGG
TTACTCCTATCTTTATTATGCTTACATTTACAGTGCTATCAAAATGAAAT
AGAAAATACAACTTGGGAGTGAAAATTAATACAGACCAATCAACATGAGT
GATGTGTTTCAAAGTCACGTTCTTCCCAATGCCAAAGCTGATTTGTCACA
ATCAGAGCTTTTCACCAACGAAGATACTTTAGACAACAAAGATAAGGACT
TCATCAATAATATTTCCAGTAAATCCAGTAAGGATTTGACACCCAAAGAA
CAGGAACGTCTCAAACACATCGTCCGAAAGAACACTCCAGTCTCGACTCG
AATCAAAATCTGGTTATTATTATCTGGTGGTGCAGAAATCACATACCAAG
CTCTTTATAAAGAAACTTGCGAAGAACTCTTCACCCAAGGTTTGTCGCTG
GGAATGAAAAACATCTTCTTGATATTTCCAAAGATCATTGGCACAACTTC
ATTGTTTTACACCATCTGAGATAAAATGATTTTATCTTTGAAAAAAAAGG
AATTTTTCAATCTAAACATGAAGGGTCACATACACTTGGATTTGTGCTCA
AAGAATAATAGCTGTGTCACGTGTTTTTATAATGTACATTCATTGGTTGG
TTCGCCTTATTACTCAATTGGTCTTTCTGTTGCTTAAAACTAAATGAAAT
ATATTTTCTTCATCCTTATTTTTGCAGGTGATTTCATCCCAGATGGTGAA
GAAGCTAATAACAAGCAATTCTTAACATACTACCTAACAACTGAAGGTGG
TAACAAACTTCGTCGTGTACTTTGTGTTATCAAACACCTGAACCCTGACA
TCACTTACTGTCCTCTCCTGGAACCAATCATCTCCATCTTACTGCATTAC
TTCGATGAAGAAGACACATTCTCTGTCGTTTCTGGCTTGTTGAGTGGATC
TTTTTCAGCACCTTTTATGGACCAAACGAAAATTGAAAACGTGACAACTG
ATGCTACTTTACAAGATTTATTCCTCAAGGTTAATGTAAGGTTACTTCAC
TTGGATCAATTCTCGTCATAAAGATCCTGACTCGAAAAATGTGTACAGAA
ACATTAGCAGACACTCGTTAATTCGAACTTCTATTATTCGAATCTTTCTA
TAATTCAAACCCAATTCTCTGTTCTCGTCAAAGGGAAATCGTCATAAAAT
ACTTTCTATTATTCGAGTACTCTCTGTAGTTCGAACAGATTAGACTTCCC
GTTCTAGTTCGAAATAGGGAGCGTTAACTGAAATCGCAAGTAATTTCACA
TCCTTTAAGTTTAACAGAGTGCCGATAAATATTTTTATTTCCACCTTTAC
ACTAACATTGAGTCAGGACTATTAATAATGAGACTTTTTTCCGTCACTTA
CATCATTTACGGATTAAAACTAAAATCTGTCGCCAGATTTCGAAAAATTT
TAAAACAACTCCCGGGGGGGGGCACTCAAGGTAAATGACCTACCATACGT
GCGGCCCTTAAGTGTCTATTTTCCGAGCTTCCCAAAGTGCACTGTAAGGG
TCGAAATCAGCAAAAATGAGAAAAATGCACTCTAAGAGTGTAAATTTTGA
CCATATTTTGCCTGAAAATGGTAAAAAGAATTCAAGGAAATGCACCATAA
GGGTCGGTTTTTCGCCCAAATTTTCTCAAATTTTCTCTTCACTTTAATCC
GATTTCAAAAGCACGTATGATGGTTATTAAATCGAGTGCCTCCAAATAAA
TAATTTTGATCCTTTGGAATTAACTTTTTAACCCACTGTCTTTTAGAAAA
AAGGGTTCAACCGATTGAACAGTTTTTTCAAACCGGAAGAATCGACAAAG
AATAAAGTCGCTCTGTTCCCAGCATGGAGGATGTGCATCTTCGAGAATCT
CGATTTCGTCTCTTTGGTAAGTTTGTTTCCATGGGAATCCCCACAGATAT
CATATTCTTTTATACACTAGATAAGCTANCTGTAGTTCGAACAGATTAGA
CTTCCCGTTCTAGTTCGAAATAGGGAGCGTTAACTGAAATCGCAAGTAAT
TTCACATCCTTTAAGTTTAACAGAGTGCCGATAAATATTTTTATTTCCAC
CTTTACACTAACATTGAGTCAGGACTATTAATAATGAGACTTTTTTCCGT
CACTTACATCATTTACGGATTAAAACTAAAATCTGTCGCCAGATTTCGAA
AAATTTTAAAACAACTCCGGGGGGGGGGCACTCAAGGTAAATGACCTACC
ATACGTGCGGCCCTTAAGTGTCTATTTTCCGAGCTTCCCAAAGTGCACTG
TAAGGGTCGAAATCAGCAAAAATGAGAAAAATGCACTCTAAGAGTGTAAA
TTTTGACCATATTTTGCCTGAAAATGGTAAAAAGAATTCAAGGAAATGCA
CCATAAGGGTCGGTTTTTCGCCCAAATTTTCTCAAATTTTCTCTTCACTT
TAATCCGATTTCAAAAGCACGTATGATGGTTATTAAATCGAGTGCCTCCA
AATAAATAATTTTGATCCTTTGGAATTAACTTTTTAACCCACTGTCTTTT
AGAAAAAAGGGTTCAACCGATTGAACAGTTTTTTCAAACCGGAAGAATCG
ACAAAGAATAAAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060929-exon-scaffold_35-1575043694:91831..92269 | TCONS_00060929-exon-scaffold_35-1575043694:91831..92269 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1575043694:91235..91542 | TCONS_00060929-exon-scaffold_35-1575043694:91235..91542 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1575043694:89654..89717 | TCONS_00060929-exon-scaffold_35-1575043694:89654..89717 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1510915933:91831..92269 | TCONS_00060929-exon-scaffold_35-1510915933:91831..92269 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1510915933:91235..91542 | TCONS_00060929-exon-scaffold_35-1510915933:91235..91542 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1510915933:89654..89717 | TCONS_00060929-exon-scaffold_35-1510915933:89654..89717 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1491911889:91831..92269 | TCONS_00060929-exon-scaffold_35-1491911889:91831..92269 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1491911889:91235..91542 | TCONS_00060929-exon-scaffold_35-1491911889:91235..91542 | Clytia hemisphaerica | exon |
| TCONS_00060929-exon-scaffold_35-1491911889:89654..89717 | TCONS_00060929-exon-scaffold_35-1491911889:89654..89717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_35 | supercontig | scaffold_35:89654..92269 - |
Blast
The following BLAST results are available for this feature:
|
