TCONS_00060917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060917
Unique NameTCONS_00060917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060917 ID=TCONS_00060917|Name=TCONS_00060917|organism=Clytia hemisphaerica|type=transcript|length=705bp
CTGGCTGAATTATGCAAATATGACGTATTGGATGAAAATAAAGCAATGGA
TTTGTTTAAAGATTTGTCATTCCATTTGAAAACTCAAGAAGAAGTTAATC
GAGTCAGTGAAGTTATTCTTGGGAAGAAATTCTCTCTGACAGATCTATAC
AGGTACTCCACCACAAAAAATGAGGAAACAAGCACCAGAAATGACCAACC
TGATCCACCATTGAAGCGTAGAAAGTAAGTCTTTCTTTAGTAATGCCATT
TGATGCTCTATATGCTATCATTTGATTGCTACTCTAGTAGGAAAAATACA
ATTTAATGTTTACTGAATACGTCAACCAATGCTTGCGTCAAAAGCTAATA
TGATAGAAGATTGGGTCTGATTGGGTTCGATTTTCTAGGAGTTGAATGCG
TTAAAAATGCCTGAAGTTCTTGTATAGATACATGCAAATACGTCACGGAT
TCCAATATTTGACCTCATTTGACCCCGACAAACTCGAACCCAATCCCCCT
TTTCGCGTTGGGAGCGATAGATGTATGGGGAGTGAATGAGTCAAGGGTAT
TCTCGGAATATAGTGAAAATCTAATCAGCATTTTTCCTCGTGAGAGTGTA
TTATTGATGGTAGATAGGAATAATCATGTATTTTCATGCTTATTTGTTCC
TGTCAATGAATTTCTACACAACAAAAAAGTTCGTCAGTACTTTCCGGTGG
AAACA
Run BLAST on NCBI

transcript from alignment at scaffold_35:19343..21376+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060917 ID=TCONS_00060917|Name=TCONS_00060917|organism=Clytia hemisphaerica|type=transcript|length=2034bp|location=Sequence derived from alignment at scaffold_35:19343..21376+ (Clytia hemisphaerica)
CTGGCTGAATTATGCAAATATGACGTATTGGATGAAAATAAAGCAATGGA
TTTGTTTAAAGATTTGTCATTCCATTTGTAAGTTAAATCTTTGCTTGTTA
GAGTTATTTCCATTAATGACTTTATTAAAGATGAGTTATTTTCATAACAA
GTGTAGAGTTAAGTATTAGAATTAAGATTCCTGGCCCTTAAAATAGTCTC
TGCTGGAGTCTCACATGAATTATTTGTTACTTGTGAAAAACAAATTTATG
GCACGAACCAGGACCCAATGCAATAGGTTCCCTGATGATCTGTCTGTTAT
TGTTTGAGACgtgtttcaatattttctatTGTGTTCATGCGAGATTAAAA
GGTAAATTTGTTCGTTCAAATTCCCCATGGAGTCATTATAGACTGTTCCA
AACAAACATTAAAACGTAAACATTTCACAGATATGATTTTACACATAATA
AGTCCACCGGAACAAACTTTTTCTGTTCGTCTTGACGTGAAACTCGACAG
ATTCAATTTTTGTTGATGAATCACATCAGAAATTAATCTCCTTCTTCACC
CTTAGTTatttcgttgttgttgttgtcttGCAAAAGCTTGACGAGGTCAC
CTCAGCAAAAAATTGAACGGATTTTATCTCAAATTTTAGTTTcatataaa
aattgaagaagttaATAATTATAATAGtcaataatttaattttctcgTGA
ATTCGTTGACTTTCATCCCGGGGTGGGGGACGGGCACTTAATAAAAAATG
ACTAAGGCCTTTAAAATCGGACCATTACAGTGCGAAACAGAAATCTTCCT
TTACAGTACATTCTCTTGAAAATGTCTGTCCATTTCATAGCAAAAGATGG
TCAGATTTTCCTAAATTTGTTCAAAAACTtcttaccttgagtgccccaaC
CCGGGCTCTCATCTTCACTTTACTTACTGTCTACAGAGATAAATTTCTAG
CTCTAatgtgtttttccatttttcttctAAGGAAAACTCAAGAAGAAGTT
AATCGAGTCAGTGAAGTTATTCTTGGGAAGAAATTCTCTCTGACAGATCT
ATACAGGTAGGTTTACACTGAGATTGACCTATTCAACTTTGAAGAACTTG
ATGAGCTTACGCAATGTATAGAATTACTCTCGATAGAATGGCGTTTTGAA
AATGAGTTACTTCTATTGAAGAAAACAGAGTGTTCCCCTTCTATACACAT
TCGGGTTAAATCTAGCTTATTTGGATAGAATGTACTATACCTACTAGACC
TACGTCAATCACTTTGCAAGAAACATTCTAGCAGCTTAACCACTCCAAGG
CCACTCAATGACCACACATTAAAACTTACTGTGATAAGCCTCACAAACGC
TCTCAAGACTAGACGCTGATTAATTCTGAAAACGTTCCAAGTGCTCACGC
CCATTCTCGGCTGTGTTAATCCGGTGAGAGAATGATGCTGACGTCATTGG
CcttttcaaatcattctttttccACATTTAGGTACTCCACCACAAAAAAT
GAGGAAACAAGCACCAGAAATGACCAACCTGATCCACCATTGAAGCGTAG
AAAGTAAGTCTTTCTTTAGTAATGCCATTTGATGCTCTATATGCTATCAT
TTGATTGCTACTCTAGTAGGAAAAATACAATTTAATGTTTACTGAATACG
TCAACCAATGCTTGCGTCAAAAGCTAATATGATAGAAGATTGGGTCTGAT
TGGGTTCGATTTTCTAGGAGTTGAATGCGTTAAAAATGCCTGAAGTTCTT
GTATAGATACATGCAAATACGTCACGGATTCCAATATTTGACCTCATTTG
ACCCCGACAAACTCGAACCCAATCCCCCTTTTCGCGTTGGGAGCGATAGA
TGTATGGGGAGTGAATGAGTCAAGGGTATTCTCGGAATATAGTGAAAATC
TAATCAGCATTTTTCCTCGTGAGAGTGTATTATTGATGGTAGATAGGAAT
AATCATGTATTTTCATGCTTATTTGTTCCTGTCAATGAATTTCTACACAA
CAAAAAAGTTCGTCAGTACTTTCCGGTGGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038246XLOC_038246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060917-exon-scaffold_35-1491911889:19343..19419TCONS_00060917-exon-scaffold_35-1491911889:19343..19419Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1510915933:19343..19419TCONS_00060917-exon-scaffold_35-1510915933:19343..19419Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1575043694:19343..19419TCONS_00060917-exon-scaffold_35-1575043694:19343..19419Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1491911889:20324..20398TCONS_00060917-exon-scaffold_35-1491911889:20324..20398Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1510915933:20324..20398TCONS_00060917-exon-scaffold_35-1510915933:20324..20398Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1575043694:20324..20398TCONS_00060917-exon-scaffold_35-1575043694:20324..20398Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1491911889:20824..21376TCONS_00060917-exon-scaffold_35-1491911889:20824..21376Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1510915933:20824..21376TCONS_00060917-exon-scaffold_35-1510915933:20824..21376Clytia hemisphaericaexon
TCONS_00060917-exon-scaffold_35-1575043694:20824..21376TCONS_00060917-exon-scaffold_35-1575043694:20824..21376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:19343..21376 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.651844	0.523003	0.699136	1.57035	0.526633	0.248313	0.446871	0.652704	0.599835	0.636103	2.43013	0.625597	0.429265	0	0.182514	0.0670215	0.177239	0.52056	0.570329	0.28081	0.510059	0.145327	0.163391	0	0.442142	0.469033	0.0980787	0	0.240459	0.228952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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