TCONS_00060911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060911
Unique NameTCONS_00060911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060911 ID=TCONS_00060911|Name=TCONS_00060911|organism=Clytia hemisphaerica|type=transcript|length=1303bp
ttccaggaaataaagtagagatgttaaaggttttcatgcagcaaaaattt
ttgtaaaatctcttttcctctagatttgagagaaatttcaaatttgatcg
ccgttttcggggccacatactgtagcgctctcgatgcagaCCATTAGGTT
AGGGTgctactttcaaaaaaactcaaatcaaagattttccttagccggga
ttgagaaactttgcCCAGGGTATTTGAAGGTCAGTGCTTAGTAGCAGTAG
AGTTACAGGCTTTTGAATATCTCATTTTTGTTGATAATCtctattatata
aaaaaagatattacatattttttaaAACGAAGAAATTTGGATAAAGATAT
TTTACAATGTAATATTTTTTGGGGATGTTAAGTTTAGTAAaagaaatatt
attattattattattttaagtgTTAATTATTAAATGGATAATCTGATGGA
TTGAGTTCTTATTAGACTGCAGATGGGTTTGCAACCGCAGTTGAGGggga
cccgaaggctcccttttctttAAGAGAGAGTGTCAATCCTTTCCCTAAAT
TTCtacacttacccttgatccgtatCGATTTTACTTCCGTCTCTTCAGTT
GCTTAGCATagagagaggcatcaagtaccattttaggtgtctttggtatg
acccggcaggggatcgaacccacaacctttgTCACTGTAGCTGGCtcctc
taccttcatgctacagCTGCAGATTTTCAGCCTTGTCAAGCTCTAAACCT
AAGCATCTCCTAGCCAGTCaaagattttaatttaatattatTTGATGTTA
GATAATTACTCCTTTATACAATACACATTCACGAGAAATAATTTTAATAT
ATTTAGAATCTgtaactaaaaatattttatgtttagaAAGGATAGGGTGC
ACAGATATCTTTTATAACACACTAGATGGATGGCATGTTATCCGtctttt
tctgtcaaaactccACCTATTGTGTTTAAATAGATATCTGCGGTGGGGTG
ATATCATCCcagatattcatgacgtaatgtttaatACGGACCTACCAAAA
ATAGCCCGGGCGTTTGCCACTATTGCTTGAATTCAAGTGGCAAATACTCG
GTCTTTCTTGgatgcttccgtataaaactaTACATCATGAACATCAAGAA
TTGTACGTTGtatcaacgttcatctaacgtacACAACGTTCTCAAGAtgt
tagatgaatgttgaaacaacggcATAATGTCAGCTGAGATAAATGAAAGC
CTGCATCAAAGTTAGCATGtaaacaaaatatattttaaacgaGAAAGTTT
TGC
Run BLAST on NCBI

transcript from alignment at scaffold_349:747234..748536

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060911 ID=TCONS_00060911|Name=TCONS_00060911|organism=Clytia hemisphaerica|type=transcript|length=1303bp|location=Sequence derived from alignment at scaffold_349:747234..748536 (Clytia hemisphaerica)
GCAAAACTTTCtcgtttaaaatatattttgtttaCATGCTAACTTTGATG CAGGCTTTCATTTATCTCAGCTGACATTATgccgttgtttcaacattcat ctaacaTCTTGAGAACGTTGTgtacgttagatgaacgttgataCAACGTA CAATTCTTGATGTTCATGATGTAtagttttatacggaagcatcCAAGAAA GACCGAGTATTTGCCACTTGAATTCAAGCAATAGTGGCAAACGCCCGGGC TATTTTTGGTAGGTCCGTattaaacattacgtcatgaatatctgGGATGA TATCACCCCACCGCAGATATCTATTTAAACACAATAGGTggagttttgac agaaaaagaCGGATAACATGCCATCCATCTAGTGTGTTATAAAAGATATC TGTGCACCCTATCCTTtctaaacataaaatatttttagttacAGATTCTA AATATATTAAAATTATTTCTCGTGAATGTGTATTGTATAAAGGAGTAATT ATCTAACATCAAataatattaaattaaaatctttGACTGGCTAGGAGATG CTTAGGTTTAGAGCTTGACAAGGCTGAAAATCTGCAGctgtagcatgaag gtagaggaGCCAGCTACAGTGAcaaaggttgtgggttcgatcccctgccg ggtcataccaaagacacctaaaatggtacttgatgcctctctctATGCTA AGCAACTGAAGAGACGGAAGTAAAATCGatacggatcaagggtaagtgta GAAATTTAGGGAAAGGATTGACACTCTCTCTTaaagaaaagggagccttc gggtcccCCTCAACTGCGGTTGCAAACCCATCTGCAGTCTAATAAGAACT CAATCCATCAGATTATCCATTTAATAATTAAcacttaaaataataataat aataatatttcttTTACTAAACTTAACATCCCCAAAAAATATTACATTGT AAAATATCTTTATCCAAATTTCTTCGTTttaaaaaatatgtaatatcttt ttttatataatagaGATTATCAACAAAAATGAGATATTCAAAAGCCTGTA ACTCTACTGCTACTAAGCACTGACCTTCAAATACCCTGGgcaaagtttct caatcccggctaaggaaaatctttgatttgagtttttttgaaagtagcAC CCTAACCTAATGGtctgcatcgagagcgctacagtatgtggccccgaaaa cggcgatcaaatttgaaatttctctcaaatctagaggaaaagagatttta caaaaatttttgctgcatgaaaacctttaacatctctactttatttcctg gaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038241XLOC_038241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060911-exon-scaffold_349-1491911889:747234..748536TCONS_00060911-exon-scaffold_349-1491911889:747234..748536Clytia hemisphaericaexon
TCONS_00060911-exon-scaffold_349-1510915933:747234..748536TCONS_00060911-exon-scaffold_349-1510915933:747234..748536Clytia hemisphaericaexon
TCONS_00060911-exon-scaffold_349-1575043694:747234..748536TCONS_00060911-exon-scaffold_349-1575043694:747234..748536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:747234..748536 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.561215 0.494627 0.306806 0.402643 9.29186 6.22941 10.1345 9.7942 5.06272 5.61546 5.62854 4.26284 6.10582 5.69715 4.38657 3.49427 4.34385 4.21154 5.05272 5.69757 3.75921 3.83544 4.0546 4.68042 8.5226 12.2001 4.05551 6.67221 7.75918 8.60174
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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