TCONS_00060910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060910
Unique NameTCONS_00060910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060910 ID=TCONS_00060910|Name=TCONS_00060910|organism=Clytia hemisphaerica|type=transcript|length=429bp
ATCGTGAGGGCGGCTGGGTCActacaatttcaaaattttaaatgatttcc
CGACCCGCCCTGCATTGTGCACAAAAAgctgtatttgatttttttaaact
cgTGCACTGGTCGTGCTCTCAAAAAGACAGAACTCCTGAAAAGTACTTAT
CTGTTTTCTGAcatcatttaattttgaaacctACCACAATGAACTGTAAT
TTTTAACTCATGAAAAATAGCATATTCAATGACATATAACATTAtatatt
attattttcaaatccatttcctgacacccctgtctcagtgaccctgtTAA
AGTTATTTAGCCAGTGAAGATAAAATGAGCTATGCCAAAGGGAGTGGAAA
ACCGCTTGTTTTTAAATGAGTGGGGATTTCAAATTCTAATGTTTACAGCT
CaaaaatccagtgaggatggCCTCAGTGT
Run BLAST on NCBI

transcript from alignment at scaffold_349:726654..727082

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060910 ID=TCONS_00060910|Name=TCONS_00060910|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_349:726654..727082 (Clytia hemisphaerica)
ACACTGAGGccatcctcactggatttttGAGCTGTAAACATTAGAATTTG
AAATCCCCACTCATTTAAAAACAAGCGGTTTTCCACTCCCTTTGGCATAG
CTCATTTTATCTTCACTGGCTAAATAACTTTAacagggtcactgagacag
gggtgtcaggaaatggatttgaaaataataatataTAATGTTATATGTCA
TTGAATATGCTATTTTTCATGAGTTAAAAATTACAGTTCATTGTGGTagg
tttcaaaattaaatgatgTCAGAAAACAGATAAGTACTTTTCAGGAGTTC
TGTCTTTTTGAGAGCACGACCAGTGCAcgagtttaaaaaaatcaaataca
gcTTTTTGTGCACAATGCAGGGCGGGTCGggaaatcatttaaaattttga
aattgtagTGACCCAGCCGCCCTCACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038240XLOC_038240Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060910-exon-scaffold_349-1491911889:726654..727082TCONS_00060910-exon-scaffold_349-1491911889:726654..727082Clytia hemisphaericaexon
TCONS_00060910-exon-scaffold_349-1510915933:726654..727082TCONS_00060910-exon-scaffold_349-1510915933:726654..727082Clytia hemisphaericaexon
TCONS_00060910-exon-scaffold_349-1575043694:726654..727082TCONS_00060910-exon-scaffold_349-1575043694:726654..727082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:726654..727082 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33897	0.471769	0.64732	0.974801	2.39018	1.26682	0.207328	0.870922	0.741557	0.974338	0.326761	0.537	0.429002	1.62011	0.732561	0.367369	0	0.248163	0.262971	1.77106	0.311835	0.551964	0.1849	0.76156	1.90739	1.14895	1.58557	1.65192	3.01417	3.04684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top