|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060908 ID=TCONS_00060908|Name=TCONS_00060908|organism=Clytia hemisphaerica|type=transcript|length=847bp
TAAAACTTTGTGATAACCATTCTCAACCGACATCCCTGTAACAGTTTTCG
CAAAAGTCACATCATCACCTTCAGCATCACCCATGTCACTCTCACTTCCC
CCATCAAAAAATCTCTGCAATCGCTTATCATTCGTCATCCACTTTCTCAA
ATCAAATCCAGCATCTTTCATCACACTATTCGCAACCTTCTGAaactttc
tcccttcttccacAGACTCACAACCACTCGTAATGTCATCAACATACAAA
TCTTCACCTAATCGATCTAAAACATCAGCTGTATACTTACCTTTTTCGTT
TTGAAGATGCTGCCGTACAGTTCCATTCAAAAGGAAAGGACTACAAGTCA
AACCCATGACAAGTCTTCTAAAGCGGTAGATAACTTGTTCGTCATTTTCC
TCCCAAATGaacctcaaaaaatctcgaTGCTCAGGAGCTATACTTATGTT
TAGAAAGGCTTTCTTAATATCAGCAACAATCCCAATCTTATTCAAACGAA
ATCTAAAAAGAACATCAAAGATCTTGGACAAAAGATTCGGTCCGGAATAC
AAACACTCGTTCAAAGAAGGTCCATTGATCTTGCAAGAAGCATCAAAAAC
AGGTCGAATCTTTGTGGTGAGTTTGTCTTCGCGCACAACAGCTCTATGCG
GAAGGTAGTGTACTGTCCCACGTTCTTTGTAAACCTCATTCACAGGAACC
TTTTCAATGATTTTCTCGCTTTCGTACTCCTTAAATACTTCGTGATAATC
ATTCAAAATTCCTGTAGACTTCAGTTTTCTGATGTTGGATTTCAATCTCC
TCTGACTTACATTGAAATTGTCAGACAGAGGATCATGATCTGGCTTA Run BLAST on NCBI protein sequence of TCONS_00060908-protein >TCONS_00060908-protein ID=TCONS_00060908-protein|Name=TCONS_00060908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
KPDHDPLSDNFNVSQRRLKSNIRKLKSTGILNDYHEVFKEYESEKIIEKV
PVNEVYKERGTVHYLPHRAVVREDKLTTKIRPVFDASCKINGPSLNECLY
SGPNLLSKIFDVLFRFRLNKIGIVADIKKAFLNISIAPEHRDFLRFIWEE
NDEQVIYRFRRLVMGLTCSPFLLNGTVRQHLQNEKGKYTADVLDRLGEDL
YVDDITSGCESVEEGRKFQKVANSVMKDAGFDLRKWMTNDKRLQRFFDGG
SESDMGDAEGDDVTFAKTVTGMSVENGYHKVL Run BLAST on NCBI transcript from alignment at scaffold_349:709934..710780 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060908 ID=TCONS_00060908|Name=TCONS_00060908|organism=Clytia hemisphaerica|type=transcript|length=847bp|location=Sequence derived from alignment at scaffold_349:709934..710780 (Clytia hemisphaerica)
TAAGCCAGATCATGATCCTCTGTCTGACAATTTCAATGTAAGTCAGAGGA
GATTGAAATCCAACATCAGAAAACTGAAGTCTACAGGAATTTTGAATGAT
TATCACGAAGTATTTAAGGAGTACGAAAGCGAGAAAATCATTGAAAAGGT
TCCTGTGAATGAGGTTTACAAAGAACGTGGGACAGTACACTACCTTCCGC
ATAGAGCTGTTGTGCGCGAAGACAAACTCACCACAAAGATTCGACCTGTT
TTTGATGCTTCTTGCAAGATCAATGGACCTTCTTTGAACGAGTGTTTGTA
TTCCGGACCGAATCTTTTGTCCAAGATCTTTGATGTTCTTTTTAGATTTC
GTTTGAATAAGATTGGGATTGTTGCTGATATTAAGAAAGCCTTTCTAAAC
ATAAGTATAGCTCCTGAGCAtcgagattttttgaggttCATTTGGGAGGA
AAATGACGAACAAGTTATCTACCGCTTTAGAAGACTTGTCATGGGTTTGA
CTTGTAGTCCTTTCCTTTTGAATGGAACTGTACGGCAGCATCTTCAAAAC
GAAAAAGGTAAGTATACAGCTGATGTTTTAGATCGATTAGGTGAAGATTT
GTATGTTGATGACATTACGAGTGGTTGTGAGTCTgtggaagaagggagaa
agttTCAGAAGGTTGCGAATAGTGTGATGAAAGATGCTGGATTTGATTTG
AGAAAGTGGATGACGAATGATAAGCGATTGCAGAGATTTTTTGATGGGGG
AAGTGAGAGTGACATGGGTGATGCTGAAGGTGATGATGTGACTTTTGCGA
AAACTGTTACAGGGATGTCGGTTGAGAATGGTTATCACAAAGTTTTA Coding sequence (CDS) from alignment at scaffold_349:709934..710780 >TCONS_00060908 ID=TCONS_00060908|Name=TCONS_00060908|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_349:709934..710780 (Clytia hemisphaerica)
AAGCCAGATCATGATCCTCTGTCTGACAATTTCAATGTAAGTCAGAGGAG
ATTGAAATCCAACATCAGAAAACTGAAGTCTACAGGAATTTTGAATGATT
ATCACGAAGTATTTAAGGAGTACGAAAGCGAGAAAATCATTGAAAAGGTT
CCTGTGAATGAGGTTTACAAAGAACGTGGGACAGTACACTACCTTCCGCA
TAGAGCTGTTGTGCGCGAAGACAAACTCACCACAAAGATTCGACCTGTTT
TTGATGCTTCTTGCAAGATCAATGGACCTTCTTTGAACGAGTGTTTGTAT
TCCGGACCGAATCTTTTGTCCAAGATCTTTGATGTTCTTTTTAGATTTCG
TTTGAATAAGATTGGGATTGTTGCTGATATTAAGAAAGCCTTTCTAAACA
TAAGTATAGCTCCTGAGCAtcgagattttttgaggttCATTTGGGAGGAA
AATGACGAACAAGTTATCTACCGCTTTAGAAGACTTGTCATGGGTTTGAC
TTGTAGTCCTTTCCTTTTGAATGGAACTGTACGGCAGCATCTTCAAAACG
AAAAAGGTAAGTATACAGCTGATGTTTTAGATCGATTAGGTGAAGATTTG
TATGTTGATGACATTACGAGTGGTTGTGAGTCTgtggaagaagggagaaa
gttTCAGAAGGTTGCGAATAGTGTGATGAAAGATGCTGGATTTGATTTGA
GAAAGTGGATGACGAATGATAAGCGATTGCAGAGATTTTTTGATGGGGGA
AGTGAGAGTGACATGGGTGATGCTGAAGGTGATGATGTGACTTTTGCGAA
AACTGTTACAGGGATGTCGGTTGAGAATGGTTATCACAAAGTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060908-exon-scaffold_349-1491911889:709934..710780 | TCONS_00060908-exon-scaffold_349-1491911889:709934..710780 | Clytia hemisphaerica | exon |
| TCONS_00060908-exon-scaffold_349-1510915933:709934..710780 | TCONS_00060908-exon-scaffold_349-1510915933:709934..710780 | Clytia hemisphaerica | exon |
| TCONS_00060908-exon-scaffold_349-1575043694:709934..710780 | TCONS_00060908-exon-scaffold_349-1575043694:709934..710780 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:709934..710780 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
