TCONS_00060907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060907
Unique NameTCONS_00060907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060907 ID=TCONS_00060907|Name=TCONS_00060907|organism=Clytia hemisphaerica|type=transcript|length=243bp
gtTAGCAATTATCAGAACACCACCATCAGTTACTTGACGCATTTCCACCA
TTGCGTCATTTATCTTTTTTACGTGAAGTGGGAGACGAGCGTTTGGAAAA
TTTGACGGTGGAAAATTCAAACCTTCTTCATAATCAGAAGGTTTCTCTTT
GTCAAACTTTATTGCTTCTTCTACAATAGCTTTGTGGTTGCGTAGGTTGG
TTGAAAGCTCGAACTTCGCGAAATCGTTATACGTTGAAAGATC
Run BLAST on NCBI

transcript from alignment at scaffold_349:530563..530805

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060907 ID=TCONS_00060907|Name=TCONS_00060907|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at scaffold_349:530563..530805 (Clytia hemisphaerica)
GATCTTTCAACGTATAACGATTTCGCGAAGTTCGAGCTTTCAACCAACCT
ACGCAACCACAAAGCTATTGTAGAAGAAGCAATAAAGTTTGACAAAGAGA
AACCTTCTGATTATGAAGAAGGTTTGAATTTTCCACCGTCAAATTTTCCA
AACGCTCGTCTCCCACTTCACGTAAAAAAGATAAATGACGCAATGGTGGA
AATGCGTCAAGTAACTGATGGTGGTGTTCTGATAATTGCTAac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038237XLOC_038237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060907-exon-scaffold_349-1491911889:530563..530805TCONS_00060907-exon-scaffold_349-1491911889:530563..530805Clytia hemisphaericaexon
TCONS_00060907-exon-scaffold_349-1510915933:530563..530805TCONS_00060907-exon-scaffold_349-1510915933:530563..530805Clytia hemisphaericaexon
TCONS_00060907-exon-scaffold_349-1575043694:530563..530805TCONS_00060907-exon-scaffold_349-1575043694:530563..530805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:530563..530805 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.913382	0	0	0.722274	0	0	0	5.46553	4.20554	3.70996	6.86535	1.9303	6.8064	3.64453	1.90687	0	0.297306	0.156536	3.42881	5.16647	5.44922	13.3361	3.26193	4.75665	3.87702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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