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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060897 ID=TCONS_00060897|Name=TCONS_00060897|organism=Clytia hemisphaerica|type=transcript|length=1996bp
ATTCTTTAAATGTATATGTTCCTAATGGGCATTTTTGACATGTCGTTCCA
TTTACCTTAAAAGTACCTTTTGGGCAATTTCGACACGAGGTACCATCAGA
TGAAACAGTACCGTAAATGCATTTTATACAAATTCCTCCAACATCTGAAT
AACTTACTCTCTCCACTTCAGTCCCTGGAGGACACTTAACACATTGATTC
TTATAGCCATAACTTCCTGGTGGACATGGCTCACAGCAAGTTCCATTCTC
ACCAATCGTTCCCTGCTTACATGAATAGCATTTTGAAGAACCTTTCCAAC
TCGAGTAAGTTCCAAACGGACATGATTTACATACTTGTCGATTAACCTCA
TAAGTTCCCTTGGGGCAATCTATACACATAGTTTGATTTGGTGAATGAAT
CGATCCTGAATTGCACTTTTTGCACCATACAAATTCTCCTTTCTCTGAAT
AATGTCCATGGCGACATTTTAAACAGGTAGTCGCATTTCGTCTGTACATC
CCTGCAGGGCAATCACACGACGCTGtcttatttttgtttacatttgttcc
CCAATAACATGGCTTACATTCATTTGTATCATATCTTCTTATGTATGTAC
CTAAAGggcatttttgacattttgtgcCATTGACGCTAAAGGAATCAAAT
GGACATTCCTCACAATTGAACTTACTCCATCGGTCAACTATCGTCCCATG
AGCACATGGCTTGCACTCGTTACGCCAGCGTCTTTTAAAAAAACCAGGAG
GGCAATATATACAAGTGCTTCTATCAGCTGATAAAACTTTCTCCTCTCCA
CAACGCCTACACTCAGGCCATCCCGCACTCGCGTAATAACCTGGTCTGCA
TTTTTCACATGTTGTTGCATTTACTCTAATCATTCCTTTCGGACAATCGC
AAGAGCTTCCATTAGTTCGATTAGAATTCATTTCCCAAAAACATTTCTTG
CATTTTCTAAGTCCACGTTTATCTGCATATGTTCCTAAAGgacatttttc
acattttttccCGTTCGAACTAAATTCTCCCACGTGACATTTAATACACC
AATCATATGTTGAATAAAGTGCAGATCCTGGTGCGCATGCTCTGCACTCA
TTGTGATACTGGTACGTTCCATTAAGGCATGGGACACATGATGTTCCGTC
CACAGTTGATAAAGATCTAGAACATCTTTTACATTTCGATAGCCCTTCAA
CATCAGCAAAATAACCAGCATGGCAATTTTCACAAGTTGTCGCATTTTTC
CTTTAAGTACCTTTCGGACAATCACACAAAACTCCTTCCGTTCTATTAAC
TCCCCAGAAACACTTATTACATTTAATCGACCCCTTCTCATAATTGTAAG
TTCCCAAAGGGCATTTCTCACATCTGGTTTGGTTAATTCTGAAAGTTCCT
GATGGACATTTTTGACACGACCAATACCATTCTTCCTTGACCGGTATTGA
GCCATTTAGGCAAGGATAGCATTGTTTACCTACTTTAATAGCTCCAGGAG
GGCATTCTACGCAAATTGTTCGATCAAGATTTGATATGCTGTTGCTAGGA
CACCAGGTACATTTCTTTCCATCTGGGCTGACGGAGTCTTCAAAGCACTT
ATCACACGACCAATTGTAACGGTTTCTTTCGTACCCAGGAGGGCAAGGCT
CCTCTGGTGGTTCCCCACATCTGCTGTTGACTTGATTACCCAAACAACAG
ATAAAGAGAATCTTAAGCAACATCTCAATTGTGATCACAATTTTATAAGA
TCCACAACATTgtttattgtatttttcttaTCACAGTTTGATCAGATCCA
ACTCATATCTGTTATGTTttaatctttttcatcaaataattGAAGATTTC
ACTGGcagatttaagggctctgaccatagtgaatttttcataattgccgt
gtttaaaatgtgttttctgactgatgtaaccaacaaaactatggcatgtt
atacattttctgttagacaaactattcctaaatctgaaaattcaaa Run BLAST on NCBI protein sequence of TCONS_00060897-protein >TCONS_00060897-protein ID=TCONS_00060897-protein|Name=TCONS_00060897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MNSNRTNGSSCDCPKGMIRVNATTCEKCRPGYYASAGWPECRRCGEEKVL
SADRSTCIYCPPGFFKRRWRNECKPCAHGTIVDRWSKFNCEECPFDSFSV
NGTKCQKCPLGTYIRRYDTNECKPCYWGTNVNKNKTASCDCPAGMYRRNA
TTCLKCRHGHYSEKGEFVWCKKCNSGSIHSPNQTMCIDCPKGTYEVNRQV
CKSCPFGTYSSWKGSSKCYSCKQGTIGENGTCCEPCPPGSYGYKNQCVKC
PPGTEVERVSYSDVGGICIKCIYGTVSSDGTSCRNCPKGTFKVNGTTCQK
CPLGTYTFKE Run BLAST on NCBI transcript from alignment at scaffold_349:130664..132659 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060897 ID=TCONS_00060897|Name=TCONS_00060897|organism=Clytia hemisphaerica|type=transcript|length=1996bp|location=Sequence derived from alignment at scaffold_349:130664..132659 (Clytia hemisphaerica)
tttgaattttcagatttaggaatagtttgtctaacagaaaatgtataaca
tgccatagttttgttggttacatcagtcagaaaacacattttaaacacgg
caattatgaaaaattcactatggtcagagcccttaaatctgCCAGTGAAA
TCTTCaattatttgatgaaaaagattaaAACATAACAGATATGAGTTGGA
TCTGATCAAACTGTGAtaagaaaaatacaataaacAATGTTGTGGATCTT
ATAAAATTGTGATCACAATTGAGATGTTGCTTAAGATTCTCTTTATCTGT
TGTTTGGGTAATCAAGTCAACAGCAGATGTGGGGAACCACCAGAGGAGCC
TTGCCCTCCTGGGTACGAAAGAAACCGTTACAATTGGTCGTGTGATAAGT
GCTTTGAAGACTCCGTCAGCCCAGATGGAAAGAAATGTACCTGGTGTCCT
AGCAACAGCATATCAAATCTTGATCGAACAATTTGCGTAGAATGCCCTCC
TGGAGCTATTAAAGTAGGTAAACAATGCTATCCTTGCCTAAATGGCTCAA
TACCGGTCAAGGAAGAATGGTATTGGTCGTGTCAAAAATGTCCATCAGGA
ACTTTCAGAATTAACCAAACCAGATGTGAGAAATGCCCTTTGGGAACTTA
CAATTATGAGAAGGGGTCGATTAAATGTAATAAGTGTTTCTGGGGAGTTA
ATAGAACGGAAGGAGTTTTGTGTGATTGTCCGAAAGGTACTTAAAGGAAA
AATGCGACAACTTGTGAAAATTGCCATGCTGGTTATTTTGCTGATGTTGA
AGGGCTATCGAAATGTAAAAGATGTTCTAGATCTTTATCAACTGTGGACG
GAACATCATGTGTCCCATGCCTTAATGGAACGTACCAGTATCACAATGAG
TGCAGAGCATGCGCACCAGGATCTGCACTTTATTCAACATATGATTGGTG
TATTAAATGTCACGTGGGAGAATTTAGTTCGAACGggaaaaaatgtgaaa
aatgtcCTTTAGGAACATATGCAGATAAACGTGGACTTAGAAAATGCAAG
AAATGTTTTTGGGAAATGAATTCTAATCGAACTAATGGAAGCTCTTGCGA
TTGTCCGAAAGGAATGATTAGAGTAAATGCAACAACATGTGAAAAATGCA
GACCAGGTTATTACGCGAGTGCGGGATGGCCTGAGTGTAGGCGTTGTGGA
GAGGAGAAAGTTTTATCAGCTGATAGAAGCACTTGTATATATTGCCCTCC
TGGTTTTTTTAAAAGACGCTGGCGTAACGAGTGCAAGCCATGTGCTCATG
GGACGATAGTTGACCGATGGAGTAAGTTCAATTGTGAGGAATGTCCATTT
GATTCCTTTAGCGTCAATGgcacaaaatgtcaaaaatgccCTTTAGGTAC
ATACATAAGAAGATATGATACAAATGAATGTAAGCCATGTTATTGGggaa
caaatgtaaacaaaaataagaCAGCGTCGTGTGATTGCCCTGCAGGGATG
TACAGACGAAATGCGACTACCTGTTTAAAATGTCGCCATGGACATTATTC
AGAGAAAGGAGAATTTGTATGGTGCAAAAAGTGCAATTCAGGATCGATTC
ATTCACCAAATCAAACTATGTGTATAGATTGCCCCAAGGGAACTTATGAG
GTTAATCGACAAGTATGTAAATCATGTCCGTTTGGAACTTACTCGAGTTG
GAAAGGTTCTTCAAAATGCTATTCATGTAAGCAGGGAACGATTGGTGAGA
ATGGAACTTGCTGTGAGCCATGTCCACCAGGAAGTTATGGCTATAAGAAT
CAATGTGTTAAGTGTCCTCCAGGGACTGAAGTGGAGAGAGTAAGTTATTC
AGATGTTGGAGGAATTTGTATAAAATGCATTTACGGTACTGTTTCATCTG
ATGGTACCTCGTGTCGAAATTGCCCAAAAGGTACTTTTAAGGTAAATGGA
ACGACATGTCAAAAATGCCCATTAGGAACATATACATTTAAAGAAT Coding sequence (CDS) from alignment at scaffold_349:130664..132659 >TCONS_00060897 ID=TCONS_00060897|Name=TCONS_00060897|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_349:130664..132659 (Clytia hemisphaerica)
ATGAATTCTAATCGAACTAATGGAAGCTCTTGCGATTGTCCGAAAGGAAT
GATTAGAGTAAATGCAACAACATGTGAAAAATGCAGACCAGGTTATTACG
CGAGTGCGGGATGGCCTGAGTGTAGGCGTTGTGGAGAGGAGAAAGTTTTA
TCAGCTGATAGAAGCACTTGTATATATTGCCCTCCTGGTTTTTTTAAAAG
ACGCTGGCGTAACGAGTGCAAGCCATGTGCTCATGGGACGATAGTTGACC
GATGGAGTAAGTTCAATTGTGAGGAATGTCCATTTGATTCCTTTAGCGTC
AATGgcacaaaatgtcaaaaatgccCTTTAGGTACATACATAAGAAGATA
TGATACAAATGAATGTAAGCCATGTTATTGGggaacaaatgtaaacaaaa
ataagaCAGCGTCGTGTGATTGCCCTGCAGGGATGTACAGACGAAATGCG
ACTACCTGTTTAAAATGTCGCCATGGACATTATTCAGAGAAAGGAGAATT
TGTATGGTGCAAAAAGTGCAATTCAGGATCGATTCATTCACCAAATCAAA
CTATGTGTATAGATTGCCCCAAGGGAACTTATGAGGTTAATCGACAAGTA
TGTAAATCATGTCCGTTTGGAACTTACTCGAGTTGGAAAGGTTCTTCAAA
ATGCTATTCATGTAAGCAGGGAACGATTGGTGAGAATGGAACTTGCTGTG
AGCCATGTCCACCAGGAAGTTATGGCTATAAGAATCAATGTGTTAAGTGT
CCTCCAGGGACTGAAGTGGAGAGAGTAAGTTATTCAGATGTTGGAGGAAT
TTGTATAAAATGCATTTACGGTACTGTTTCATCTGATGGTACCTCGTGTC
GAAATTGCCCAAAAGGTACTTTTAAGGTAAATGGAACGACATGTCAAAAA
TGCCCATTAGGAACATATACATTTAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060897-exon-scaffold_349-1491911889:130664..132659 | TCONS_00060897-exon-scaffold_349-1491911889:130664..132659 | Clytia hemisphaerica | exon |
| TCONS_00060897-exon-scaffold_349-1510915933:130664..132659 | TCONS_00060897-exon-scaffold_349-1510915933:130664..132659 | Clytia hemisphaerica | exon |
| TCONS_00060897-exon-scaffold_349-1575043694:130664..132659 | TCONS_00060897-exon-scaffold_349-1575043694:130664..132659 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:130664..132659 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011641 | Tyr-kin_ephrin_A/B_rcpt-like |
| IPR009030 | Growth_fac_rcpt_ |
Blast
The following BLAST results are available for this feature:
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