TCONS_00060893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060893
Unique NameTCONS_00060893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060893 ID=TCONS_00060893|Name=TCONS_00060893|organism=Clytia hemisphaerica|type=transcript|length=248bp
ttctgagaaaacttaaaatacacaaaaatgcCAACATATTCTGACCACCA
TTCTAGGTTCATGTGTTGCTGGAGTTGTTGGCTTAAAAATGCCGCGTTAT
TGCTTGTTTGGTGATACTGTGAACTATGCAAGTCGTATGGAGTCTAGTGG
ACTGGCATTAAGAATTCACGTCAGTCCAGAATGCCATGAGGTTTTAACTG
AACTTGGTGGCTACCATCTTATCGAGCGTGGTCCTGTCTCTATGAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_349:820690..821706-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060893 ID=TCONS_00060893|Name=TCONS_00060893|organism=Clytia hemisphaerica|type=transcript|length=1017bp|location=Sequence derived from alignment at scaffold_349:820690..821706- (Clytia hemisphaerica)
TTCTGAGAAAACTTAAAATACACAAAAATGCCAACATATTCTGACCACCA
TTCTAGGTTCATGTGTTGCTGGAGTTGTTGGCTTAAAAATGCCGCGTTAT
TGCTTGTTTGGTGATACTGTGAACTATGCAAGTCGTATGGAGTCTAGTGG
ACTGGGTAGGTTACTTTCATCGTTGCTTTTTGATTGGCTCTTTTACAGAA
TACTGAAATATGTGATTGGCTAATAGCCTATTTCATATGATTTGTGTATC
TGTTATATGCTATCTTCAATTCAATAGACCTTATCGGAGTTTTTGATTTT
CTAAAAAAGCGATGCACTGTAGAATTGTTTCGAGTGTATTACAATAGACC
TTTTTTTAAAGAATCAGCAATGTTGAGTAATTATGTACTCCAGTATACAA
ACAATGATACAGCCATGCATGATTTTTAAAATATGCATGATACAGTAATT
ATGCATTGCTGTATCATTGTTTTTATGCTGGAGTACATAATTATTCAACA
TGGCTGCCTCTTTAAAAAAAGGTCTATAGAATTCCCTCGAGGAATTCCCA
AGAGGTCTCTTCCCAAGAGGATTTTTATATATAAATTTGCAAATGAAGGA
CAACCCATTGACTTTGAAGCCCCGAAACTCTTGAATGGGAAATGAAACCA
CTCACCCCCCCCTCCAAGACCCGTATGGTTTTCTTACAAACGCCGGATCG
AAAGTATAATCTGTCGCAAGATTTTGAAAAAATATGTCAGCAAATTTTAG
TGAATTTCAGAAAGATTCGAATTACAGAGAGCAATTTAAACCACTTTTTA
GTTGAAAAGACAATTACTTTATTTCGATTTACAGAAAGATTCGAGGAACA
GAGATTCGAATTAGACAGTTGGATTTGATCATTTAAAATTACAATTCCAA
TCATCTTTTTCTCCTCATTTTCAGCATTAAGAATTCACGTCAGTCCAGAA
TGCCATGAGGTTTTAACTGAACTTGGTGGCTACCATCTTATCGAGCGTGG
TCCTGTCTCTATGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038223XLOC_038223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060893-exon-scaffold_349-1575043694:821552..821706TCONS_00060893-exon-scaffold_349-1575043694:821552..821706Clytia hemisphaericaexon
TCONS_00060893-exon-scaffold_349-1575043694:820690..820782TCONS_00060893-exon-scaffold_349-1575043694:820690..820782Clytia hemisphaericaexon
TCONS_00060893-exon-scaffold_349-1510915933:821552..821706TCONS_00060893-exon-scaffold_349-1510915933:821552..821706Clytia hemisphaericaexon
TCONS_00060893-exon-scaffold_349-1510915933:820690..820782TCONS_00060893-exon-scaffold_349-1510915933:820690..820782Clytia hemisphaericaexon
TCONS_00060893-exon-scaffold_349-1491911889:821552..821706TCONS_00060893-exon-scaffold_349-1491911889:821552..821706Clytia hemisphaericaexon
TCONS_00060893-exon-scaffold_349-1491911889:820690..820782TCONS_00060893-exon-scaffold_349-1491911889:820690..820782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:820690..821706 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03644	0.77165	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.909106	0	0	0	0	0	0
Blast
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BLAST of TCONS_00060893 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.336e-22
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:   56 GSCVAGVVGLKMPRYCLFGDTVNYASRMESSGLALRIHVSPECHEVLTELGGYHLIERGPVSMK 247
            G   AGVVGLKMPRYCLFGDTVN ASRMES+G AL+IH+S E   VL E GG+ L  RG V MK
Sbjct:  978 GPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFELELRGDVEMK 1041
The following BLAST results are available for this feature:
BLAST of TCONS_00060893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANPRA5.336e-2268.75Atrial natriuretic peptide receptor 1 OS=Homo sapi... [more]
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