TCONS_00060844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060844
Unique NameTCONS_00060844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060844 ID=TCONS_00060844|Name=TCONS_00060844|organism=Clytia hemisphaerica|type=transcript|length=3643bp
TAAACAGAAGAGGTCAAGAATTGAGTGTTTTAGGGGAAAGTTTCTACTCT
TTTTACCGCATCATCTAAATCTTTGAACTACATATGATAAttcgtttatt
aaatttttcattcactTTTCTTACAGACTGTTTAGATTTTGAATGATTAC
CCTTAAGAATAATTTGGTACAGGCTAAACTAGCTCCTATAACTGGCTAGG
GATTTTACGACATACATTTGCTTTAACAGGTCTTACTGTTGTGAATCAAA
TAAGTGGCTTTAAATTTTTAacaatcaaaaactttttggtgTGAGATTTT
TCAggtgtgaaaaatgaaaatttgaatgaaatttaaagGGACACCAGAGT
AACATATTCTTaacaatttttcttgtttctgCTCTATTTTTAGAAGAATA
CATCATCTATCGAAGGAAttgctaactttttttttatcaaagtgaaGCAA
CCCTTCTAATTAAAACGTTAGAAAGAAAACACAAACATAAAGAAAATACT
GTTTTGCTTGCTGGGTCGTCATGGTAATTTGAAACAAGCGAAACGAAAGT
ACAATTGAGaagaataaaatcaaaagaaaaagggaagaaaagaaattgaa
tatttttgtttcacaaacacaacaaaaatttatcgaaaaaaaaagaaaaa
gaacattCTTGCGCAGATAAatcagaaaagaattttttttcatctccGAT
TTTTTTGGACGAGTTGAATACCACTGCAGGGTGCAATACAAATCTGGATG
AACAGTTTTTGGTGAAGCTTcagttttgttgatatttttcgaaTCATTAG
CAAAGCTAAAGAAGGCTTTTTGAGTCACCGAGTTACCGAAAAGAGCAACC
GAGCATTGATTTTGGTTTGGTattttttggagaattttttgGAGCTAAGC
TAAGCTCTCTTATGAGAATCGAGCTGTAACACCACGGACTGATTATAAGC
CATCATGTTTAAATTTGTTATGACAAAGAACAGTATCGAACTTTTTCATC
GAGCAattttatcgaatgatttatcgagAACGAAATTGATCCTCGAGGAA
GCGATGAAAGATCCTCGATTCGATATCGATGAAATAAATGAAGAAGGTTT
AACGGCTTTACAGTTCAGTTGTTTCGCCGGACATCTTGAAATTGTCAAAG
TTTTGATATCGTATAAGGCAGACGTAAAGAAGCGAGATAGAGACGGGAAT
TCGTTACTCCACGCGGCCGCATTAGCCGGCAAAGTAGACATTGTGAAATA
TCTATTACGTTGTGGCATAAAGCCGACAATACGAAACGATGATAACCAGA
TGCCAATCGACTTTTCAGAAGAAATTGCAATTATCGTGATTCTTTTACGC
GCTATGTTAGACCAGGGATATTTAGAAGAAATGCAAGAATACATGATCGA
CCATCCTAAACTAAAACGAAACATTTTTGAAGAGTTAAAACGAGTGAAAT
GTCGAGAGACTgagcaaaatcaaattttacaaGAGCTTCCCTATTCCTCA
CATACGAGCCCTCGTAGACAAATCAACAAGAGCCGCAAACCTTCGGATGA
GCTACAAGGTCGTTCTATtagtactttttcaaaattatcagaCTCAATGC
AATATTTGGACCAAATTGATCGAAATGAAACCAATAATAATTATAACCAA
CATTACCATAAAAATAATGGGTATTCTTATGATAATGCACCTACATTGAA
ACGAAACAATAGCACCAGTAGTTCTTCTAGTCATGGATCGCGGTCATCCA
GATCATCAAAAGGAAGTGGGGCTGGTATATTACGTCATGAGTCAAACGAT
TACGAATCGAGGCataaacaaacacaaaaatatctcGAAAATCGATTCCC
GCAATCGATGAAATCGGTTAGTTTTGAGTCCGATCATCAAGGAGGAAACA
ATCGAAGCTATTCAGACGGTTACCATAGCGATTCGTTTGATGACAAAATA
CCAAAAGGTCGTCTGTCTCGATCATCCAGTATTTCATCTCACTCTTCAAA
CCATACAGGTGTTTTTAGTGACACGTGCTCAAACTTCGATTTTCCCACCC
AGCCTCCACCCCACGAACCACCCAAAACGCCAACACCGCAACAAGAAGAA
GCCATTTATGCTAACTTCCAGCCAGTTAGATCAAACAGTTTACCAACTAT
AGCTGAAGGAGAAAATATATATGAAAATCTACCTTTGAGAGGAATTAAAC
CGAGTCCAAAACAACAAACGCCCAAATTTGTCGCTCCGCCCTTACCACCA
CGACAACCCACCACCCCACCGAAACCAAAGCCACAACAATCAAATCGCCA
TAGTAACTTGTATGAATACGAGTCTACATCGTACTCAACTAATACCTATC
AAAGAGATACATCGTATCCAGTAAATACCAACCAAAGGGATACATCGTAC
TCGGCCAATGAACGTCAACTTGGCTCCGAAACGGACAGTGGTATTGACAT
TAACGAGACTGCTGGTCGTGTTTTCGCACTATCTTTAGACGACCAACAAC
AGCCAATTTATCCTGAAACACCAAACATAGTCGAGCCTCCTACACAGACA
TCCTATTCTAAGCCTATTGGAATTTATTACTCTCAACAAATGAATGTAAC
TGCTCGGCAATCGGGCAAAAGAGACAATAACGTGCTTATTGCAGCTAATA
CGCATGCGCATTTAAACCCAAAATATAGGAGTTGGAATGGTAGAACATTA
TTAGAATCTCAACAACAAGCACAAGATAACCTAGCACCTTACTCTAATCA
TGGCTCCCGCTCGAGCGGCCACCCTCAAAGGACATCACGTGACGATTATG
ACGTATATAAAAGTCAACAAGCGCATGCGCAAGAACAAAATGGATATCAA
GCACAGCGCAGACATACAAATAGCGGATTGGAACTAAGACAATTTAATTT
TGATCATCAACCTGAGATTATgttataataaatatttttttcttgatgtT
ACTTTTTTGAAGAGTTGTTGATAAATGAAGGTTTATTGACCTATTAACCT
ACTACTAAATTAGTCCACACATGGGAGCTTGATTTATAGAATGCAAAAAT
CAAACTTCTGAATCTAtacttgtttttgttttgatttataatAGCTGATT
GAGAATATACTGTtgtctctctctaattcgatctttaagggaCCGAGGAT
TTATACGAAATTCCaccaatgttttagttcgaattacagagagatttgaa
ttttaaagaagattcgaattagagagagttgacagTATTTCTTTTGGACT
CTCAAATCTGGAATATGACATCCTAGATAATTAGTGATCTAATTTGAATT
TCACTAATCTTGGCTTTCATGTATATTTATATTATGAAAATTTATGAATT
AACCAATCTAGGTTTTCTCAACCTTTCAAAAAGATGAACCTTCTAGCCCG
AGGTACTATCAAAGTTATAAAGGGTTTATTAAACATACGAATACTTTCCG
CTCTATAACCCATCTTTTCTGTTGTAAATAATTATCATTTAGGAACAATT
AAAATTGACAGATTATTTGTATCatagatatatttttttatactttGCAT
GAATCATTGGAAATTTTATAGATACCAcgattaaaatgataaaaattgaa
aattatacattttgaaTAATATAGAGCAATTCTGTTGTTTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_349:307706..311348-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060844 ID=TCONS_00060844|Name=TCONS_00060844|organism=Clytia hemisphaerica|type=transcript|length=3643bp|location=Sequence derived from alignment at scaffold_349:307706..311348- (Clytia hemisphaerica)
TAAACAGAAGAGGTCAAGAATTGAGTGTTTTAGGGGAAAGTTTCTACTCT
TTTTACCGCATCATCTAAATCTTTGAACTACATATGATAATTCGTTTATT
AAATTTTTCATTCACTTTTCTTACAGACTGTTTAGATTTTGAATGATTAC
CCTTAAGAATAATTTGGTACAGGCTAAACTAGCTCCTATAACTGGCTAGG
GATTTTACGACATACATTTGCTTTAACAGGTCTTACTGTTGTGAATCAAA
TAAGTGGCTTTAAATTTTTAACAATCAAAAACTTTTTGGTGTGAGATTTT
TCAGGTGTGAAAAATGAAAATTTGAATGAAATTTAAAGGGACACCAGAGT
AACATATTCTTAACAATTTTTCTTGTTTCTGCTCTATTTTTAGAAGAATA
CATCATCTATCGAAGGAATTGCTAACTTTTTTTTTATCAAAGTGAAGCAA
CCCTTCTAATTAAAACGTTAGAAAGAAAACACAAACATAAAGAAAATACT
GTTTTGCTTGCTGGGTCGTCATGGTAATTTGAAACAAGCGAAACGAAAGT
ACAATTGAGAAGAATAAAATCAAAAGAAAAAGGGAAGAAAAGAAATTGAA
TATTTTTGTTTCACAAACACAACAAAAATTTATCGAAAAAAAAAGAAAAA
GAACATTCTTGCGCAGATAAATCAGAAAAGAATTTTTTTTCATCTCCGAT
TTTTTTGGACGAGTTGAATACCACTGCAGGGTGCAATACAAATCTGGATG
AACAGTTTTTGGTGAAGCTTCAGTTTTGTTGATATTTTTCGAATCATTAG
CAAAGCTAAAGAAGGCTTTTTGAGTCACCGAGTTACCGAAAAGAGCAACC
GAGCATTGATTTTGGTTTGGTATTTTTTGGAGAATTTTTTGGAGCTAAGC
TAAGCTCTCTTATGAGAATCGAGCTGTAACACCACGGACTGATTATAAGC
CATCATGTTTAAATTTGTTATGACAAAGAACAGTATCGAACTTTTTCATC
GAGCAATTTTATCGAATGATTTATCGAGAACGAAATTGATCCTCGAGGAA
GCGATGAAAGATCCTCGATTCGATATCGATGAAATAAATGAAGAAGGTTT
AACGGCTTTACAGTTCAGTTGTTTCGCCGGACATCTTGAAATTGTCAAAG
TTTTGATATCGTATAAGGCAGACGTAAAGAAGCGAGATAGAGACGGGAAT
TCGTTACTCCACGCGGCCGCATTAGCCGGCAAAGTAGACATTGTGAAATA
TCTATTACGTTGTGGCATAAAGCCGACAATACGAAACGATGATAACCAGA
TGCCAATCGACTTTTCAGAAGAAATTGCAATTATCGTGATTCTTTTACGC
GCTATGTTAGACCAGGGATATTTAGAAGAAATGCAAGAATACATGATCGA
CCATCCTAAACTAAAACGAAACATTTTTGAAGAGTTAAAACGAGTGAAAT
GTCGAGAGACTGAGCAAAATCAAATTTTACAAGAGCTTCCCTATTCCTCA
CATACGAGCCCTCGTAGACAAATCAACAAGAGCCGCAAACCTTCGGATGA
GCTACAAGGTCGTTCTATTAGTACTTTTTCAAAATTATCAGACTCAATGC
AATATTTGGACCAAATTGATCGAAATGAAACCAATAATAATTATAACCAA
CATTACCATAAAAATAATGGGTATTCTTATGATAATGCACCTACATTGAA
ACGAAACAATAGCACCAGTAGTTCTTCTAGTCATGGATCGCGGTCATCCA
GATCATCAAAAGGAAGTGGGGCTGGTATATTACGTCATGAGTCAAACGAT
TACGAATCGAGGCATAAACAAACACAAAAATATCTCGAAAATCGATTCCC
GCAATCGATGAAATCGGTTAGTTTTGAGTCCGATCATCAAGGAGGAAACA
ATCGAAGCTATTCAGACGGTTACCATAGCGATTCGTTTGATGACAAAATA
CCAAAAGGTCGTCTGTCTCGATCATCCAGTATTTCATCTCACTCTTCAAA
CCATACAGGTGTTTTTAGTGACACGTGCTCAAACTTCGATTTTCCCACCC
AGCCTCCACCCCACGAACCACCCAAAACGCCAACACCGCAACAAGAAGAA
GCCATTTATGCTAACTTCCAGCCAGTTAGATCAAACAGTTTACCAACTAT
AGCTGAAGGAGAAAATATATATGAAAATCTACCTTTGAGAGGAATTAAAC
CGAGTCCAAAACAACAAACGCCCAAATTTGTCGCTCCGCCCTTACCACCA
CGACAACCCACCACCCCACCGAAACCAAAGCCACAACAATCAAATCGCCA
TAGTAACTTGTATGAATACGAGTCTACATCGTACTCAACTAATACCTATC
AAAGAGATACATCGTATCCAGTAAATACCAACCAAAGGGATACATCGTAC
TCGGCCAATGAACGTCAACTTGGCTCCGAAACGGACAGTGGTATTGACAT
TAACGAGACTGCTGGTCGTGTTTTCGCACTATCTTTAGACGACCAACAAC
AGCCAATTTATCCTGAAACACCAAACATAGTCGAGCCTCCTACACAGACA
TCCTATTCTAAGCCTATTGGAATTTATTACTCTCAACAAATGAATGTAAC
TGCTCGGCAATCGGGCAAAAGAGACAATAACGTGCTTATTGCAGCTAATA
CGCATGCGCATTTAAACCCAAAATATAGGAGTTGGAATGGTAGAACATTA
TTAGAATCTCAACAACAAGCACAAGATAACCTAGCACCTTACTCTAATCA
TGGCTCCCGCTCGAGCGGCCACCCTCAAAGGACATCACGTGACGATTATG
ACGTATATAAAAGTCAACAAGCGCATGCGCAAGAACAAAATGGATATCAA
GCACAGCGCAGACATACAAATAGCGGATTGGAACTAAGACAATTTAATTT
TGATCATCAACCTGAGATTATGTTATAATAAATATTTTTTTCTTGATGTT
ACTTTTTTGAAGAGTTGTTGATAAATGAAGGTTTATTGACCTATTAACCT
ACTACTAAATTAGTCCACACATGGGAGCTTGATTTATAGAATGCAAAAAT
CAAACTTCTGAATCTATACTTGTTTTTGTTTTGATTTATAATAGCTGATT
GAGAATATACTGTTGTCTCTCTCTAATTCGATCTTTAAGGGACCGAGGAT
TTATACGAAATTCCACCAATGTTTTAGTTCGAATTACAGAGAGATTTGAA
TTTTAAAGAAGATTCGAATTAGAGAGAGTTGACAGTATTTCTTTTGGACT
CTCAAATCTGGAATATGACATCCTAGATAATTAGTGATCTAATTTGAATT
TCACTAATCTTGGCTTTCATGTATATTTATATTATGAAAATTTATGAATT
AACCAATCTAGGTTTTCTCAACCTTTCAAAAAGATGAACCTTCTAGCCCG
AGGTACTATCAAAGTTATAAAGGGTTTATTAAACATACGAATACTTTCCG
CTCTATAACCCATCTTTTCTGTTGTAAATAATTATCATTTAGGAACAATT
AAAATTGACAGATTATTTGTATCATAGATATATTTTTTTATACTTTGCAT
GAATCATTGGAAATTTTATAGATACCACGATTAAAATGATAAAAATTGAA
AATTATACATTTTGAATAATATAGAGCAATTCTGTTGTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038209XLOC_038209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060844-exon-scaffold_349-1575043694:307706..311348TCONS_00060844-exon-scaffold_349-1575043694:307706..311348Clytia hemisphaericaexon
TCONS_00060844-exon-scaffold_349-1510915933:307706..311348TCONS_00060844-exon-scaffold_349-1510915933:307706..311348Clytia hemisphaericaexon
TCONS_00060844-exon-scaffold_349-1491911889:307706..311348TCONS_00060844-exon-scaffold_349-1491911889:307706..311348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:307706..311348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.69947	0.331638	0.933584	2.60481	0.258728	0.646688	0.420394	1.19283	0.682585	0.286594	0.584173	0.126428	0	0.713063	0.771916	0.115394	1.40417	2.64178	0.713651	0.531864	0.222754	0.695808	4.09375	2.24442	1.95736	2.46348
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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