TCONS_00060842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060842
Unique NameTCONS_00060842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060842 ID=TCONS_00060842|Name=TCONS_00060842|organism=Clytia hemisphaerica|type=transcript|length=1427bp
CCCTATGGGCATCTTTTACATTGAATTCTTATAAGGGAAAGAAAAGGAAA
GTTACTCCATCTAACCTTGAAACTCCAAATCAGATTGAAACTGAAGAACT
TAAGTCAAACTAAACTTAATTAAAGTTTGCATCCAAACAATTAGAAAGAG
CTTCCAAGAAGTGTGAGAAAGAGGAAAAAGCTCAACAAGCCAAAATTAAA
AAGGCTATGCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAA
TGCAATTCGTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAA
GAGTAGATGCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGT
ttgACAAAGACTATGGGGAGCGTTGTTAAAGGGCTAGATAAAGCATTGTC
TTCCATGGACCTCGGAAAGATTTCGGCCATTATGGAGAAATTTGAGAAGC
AATCGGAACACCTAGACGTTCATACATCTGTGATGGACGACACTATGGGA
GCAGCTACCACTTTAAGTACGCCGCAAAACCAAGTTGATTCATTGATACA
ACAAGTGGCTGACGAGAACGGGCTAGAGGTCATGGACCAAATGTCCGAAT
TACAGCCTGGTACCTCAACTCTCGCgtctacatcatcaaaagaagcAGAT
CATGGAAGTAAAGATTCAGAGCTAGATAAAAGGCTTGCCGCACTGAGGAA
CTGagagattattttttggttTCAAAAGATGTCTTTTAGcgtgattttgc
acaaagttgGGCAACGCCTTTGGTTAACTTCTTCACTTAGAAACACAGTA
CACCATTCATTTGTCTTTGATCCATCAGACTGTTCGACTGTTATTGAATT
AGACTTCACATtacaaatatttaattttgagtACTGTAATTGTAAAAAAT
TTACACTTTTAAACAACATTGATAATgctattcgaacttctattattggA
ATCtccctgtaattcgaacaaatatgATTCCccgtttgagttcgaattag
cgagagtaaACTGTATAAAAAGTTAGGTCCGGAGAACAACAACTCGATTT
TGTGATAAATTCTGTGCAAACAGACCTTGACAAATATTATGTACCcgaaa
ggaagaaattttgacggaaAAAATCTAGCGGATCTGTCCGAATAAGTTCc
cgctaaatttaatttttcaagacattcgtcaaattaaattctctcttaaa
aaaactttttcagcccTCCCCAAAATTTaattcccgtcaaaatttcttca
cGTTTGGGTCAGTTTCTGAACGGTTGAGTTCTTCCAATAACGTTACGTTT
CAATGCGTGCTCTTGCCATTTGAAAGAACCatgaaaaatattgtcaaaGA
GGTTACAGTATTTGTAAAATTTCGTTTATTCAATTCCGATAAccaagttt
gaaaataaaaatgagccAATATTTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_349:268029..276211-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060842 ID=TCONS_00060842|Name=TCONS_00060842|organism=Clytia hemisphaerica|type=transcript|length=8183bp|location=Sequence derived from alignment at scaffold_349:268029..276211- (Clytia hemisphaerica)
CCCTATGGGCATCTTTTACATTGAATTCTTATAAGGGAAAGAAAAGGAAA
GTTACTCCATCTAACCTTGAAACTCCAAATCAGATTGAAACTGAAGAACT
TAAGTCAAACTAAACTTAATTAAAGGTCTGTTGTGAAAAGTTATGATTAA
TAAGAATTGAAGAAATATAGCTTTTTTGTAAACTCCATTTTTTTTATTTT
ATGCCTTGAAAATTTTCCGTTCAAAAGTTATGACGGCTCAAAAAATTTTG
ATGGTGTCATCACAAGCCTTTCCACAGGCTAAACAGAAAAAGCTCAACCA
GCCAGCTGACTGATTTATGATGTTTTTTATATGGATTCTTATCAGAATTG
AGCGCTCCTTCTGATGGTTTTACCCAAACAGCATTTGAAGCTTTATGACG
TGCCAAATATTCCAAATTTATTTTTCACTGCCTTGAAAATATTGATTTAA
AATATTGGGTAAAAAGGTCATCTGTGCCAAATTTCCTAACTACTGTGTGA
AGTAATGTAGCCTAAATGTGATAACATGCATGGCATTTTTCAGAAAAGAA
ATATATAATGATTATTTTTTTCTCCCCTGTGCAATTCTAGTTTGCATCCA
AACAATTAGAAAGAGCTTCCNACATGCATGGCATTTTTCAGAAAAGAAAT
ATATAATAATTGTTTTTTTCTCCCCTGTGCAATTCTAGTTTGCATCCAAA
CAATTAGAAAGAGCTTCCAAGAAGTGTGAGAAAGAGGAAAAAGCTCAACA
AGCCAAAATTAAAAAGGTATTGTGTATTTCTGTATTTATGCTTTCATAAC
TTGTTCTTAACATTTTGGCAATCGAAGCCTCGTGTTCTTATATAGTTTGT
TTACCTGTTTAGCTTTAAGATGCTGTTCATTTAACCTTGCTGTTTAATCT
TTACTCATAAAGCGTGTAAAATGTATTCTTAGGTTCCAAATAAACTGGGG
GGGGCTTGAATAAGCAGGGGGGGGTTTGGAAAATTTCGAGATTTTAATAA
ACAAGGGGACCTAATTGCCGGGGGGTTGGAAATTGTACCTCTGAAAACCC
AAAAATAAGGCTAAAATAAGGCTATTTAGAGCAAAATAAGGGGCCTTCTC
TTTGACAGCTGAAAATATTCTTAAAAATTAATAAACGAGGGGTCCTAATA
AGATCCGGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGGGGGGCGT
TTATTTGGAACCTAAGAGTAAGTCATTTTTATTCGAAATCTAATCACGAA
ATTTCAAAAAGCCCCTCTCCCTTGAATATAATAGCCTGTAAACCAATCAA
CCCCTCCCAAATCGAAAAATATAATGAAACAAAATGGAAGTAATAAAATC
GCAATTTTAGCCCGAATTTTATATTCTGAAAAACGTTAAAATAACCAAAA
TTGTCAATATCATTTCGACGGTGATTGTAGCGTTGGACAATTTTTTATAA
GAATGAAGTATATAAGAACATAAAACTTCAATGGCTAAAATATTAAGAAC
AAGTTGAGAACATTTAAAGGCTTTGCGAACATACACACCCGACCTTTAAA
AAAAATGAACAAAAATATTCACAAAATGGTGATCCAAAGGCTTCAAAAAT
GTTGGATATTCTTATAAAAAACATGTATGTCTCTTTTAAATATTAGGCTA
TGCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCAATT
CGTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGTAGA
TGCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTGTAAGTT
TGTTATTGTTTTTCATTCACAGCACAGCCCAAAAAAACCGGTCATTATTG
TATTTGTTAAACGTTTCCTTCAGCTTCGATTAATTCTTCGTGCTTTATCC
AGAAAAAGTAGAGAAAAAAACGAGAAAACAAGCGTAAAGAGATCAAAAAG
ATCAAAAGATCATGTTTTAAATTCTGACTTCAAAAATGAAAAATGAGACA
AATGATGTCAACGCATAGTGTTCATTTTCCTTTGAAAAAACTGACGTCAC
AATGAATTTTCCTAACGACGGGCAACTCTGTGCAGTGTAGGCCCGTTGTC
ATGCGAAAAGAACCAATTAGATTGCGCAAAAAGCCGTGTAGCTCGCTTCA
AAAAAGTAACTGGTTAACAAACGATCTTTTCCTTGAAGCTTTTACATGAA
AAACTTACATACGGTAAGTATGAGAAAATTTGGACTAGACGTTAAAAAGT
AAATCATTCTTCTCGTTTTTTTTTCATTTCAGTTGACAAAGACTATGGGG
AGCGTTGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCTCGGAAA
GGTAGGTTTTTGATTTCAACCTTAAGGGGTCTCTTTGGCTCCTCGAGATT
ATCCGCATATAAATAAATAGCAGTTCGAATGGTTATGAATTAAAAACACT
TTCTATTTTAAGATTTACCATTTAAGATATTTTCATGGGCACACTGAATT
TTATTTACAATAATTTGTAAGTTTTCGTTCATTTTTTTACAATTTACAGG
GTAATTTACAATTTACATGGTTTGTTGTTTTAATATGAAACAAATAAACA
CAAAAACTCCTAGTTATGCTTTTATAAACTTATTTCAAAGTTTTAGGAAC
TTAAAAAAGTTAAAAGTTAAAGAAAAAACATTACTTTTAGCTTTATCACA
AGCTATTTAGCAATAGCTCGTTTCGATTGAATGTTTCGGATTTTTTTCGC
TCTGTTCCTCTTTCTCCTATTCTGTTCTTACTCCAACACATCAATACTTC
TTTAAGTTTCCTTCTCGCTCTACTGTTCGTCGTCATGTATACTAACGCAT
TCCCACTACTGTTCAAATTGGATAGCAACCGTAAAGCATACATGAGTAGA
TTGTGGATCTTTCACATCCATGTAAGAGGATGGTGGGAAATGCGTTATAT
GATGTCCTTAGGAGTATTCAGCAAGTGCTTGTTTCGTTTGATTGTGTAGG
ATTCTGCTTATGTTCTGCCACTTTACTTTCTCCTATTTTATTCTTACGCC
AACACATCAATACTTCTTTAAGTTGCCGTCTCGCTCTGCTGTTTGTCGTC
ATGTATACTAAGGCGTTCCCAGTACTGTTCAAATTGGATAGCAACAGTAA
AGCATACATGAGTAGAATGGAGCTACTTTTACCGAATTTCCGTTCAAAAG
GCTTCATAACTGGCAGAAATAAGATGATGGGTGCATAACATATGGTGACA
AGAATCAGGAAAGCAGAGGCTAGTTTGGTCATGCTCGCAGTGGAAGCCGA
GATACGTTTTGATTGCTTGCGATGGCTTCTCAACTTTATAATTGAGATGA
TGTACAGGACTAAGGCTAACCCAACAAATAACAGGTTAGCTGGTGATGAG
TATCTCGCACCACCGTTTTGTCCGAATAAAGCTGGTCCGAATGTGGTGAT
CACTGCAGCATAAAATGCGAAAAAGATGTAGACGGCAAACAGTAGGTTAT
GTCGTGTCGCCGTGATGATTGTCGTATAATGGGGTAGCAGCTTGACGTGT
AGGAATCTGTCTAAAGCCATGAACATGACAAGATAACATGATTGATAAAT
GAAGATGTGTGGGAAGAGTAAAAGCATTCTCCTTTGGGAACATACCAGAT
GTTCTGTATATAGAATGAAGATGATTTGGGTAATCGAGGCGATGACAGCT
TGTAGGATATCACATACTGAGATGATGAAAACTAAACGGAGCGAGCGTTT
TTTGTAATGGCCTGTCAAGACGTTGATATAACTTGATAAAGTGTTCAGCA
CTGTATTGACTACAATCATGATTACATAACATGCCACCAGTATGTATCGT
GCTTGGTTGGACACGTATACGATGTTATCGTAATTGGAATAACAGTTTAA
GAAGATGGTAGCTGTTGATGTGAGGTTGTTGGTCGTCGTAATCGATGGTG
GTGCTTTTAAAACAGACTGGTTCATGGTTGAGCCGGTTGAAAATCTGAAA
CAAAAAAATAAATTTTGATGAATATTTCTCCCCGTAACTGTGTTGTGGTT
TGGGTGCGGAAATTTAGTTCCTCGAGTTCAAATTCTGTAAAAATCCCTTG
AAAACGAAAGTTTTCCGACAGAAAGTGGATGTTGTCCGTAGAAAAACGCC
AGTTTCTTTCTGTAAAAATATTTCATTGAGGTGCTCCATTGCGAGATGTT
GTTGATGCTTTAAGCTTCTTTACAAAATATATAACATTCTTGATTGAAAA
GTTTGTCCCGCAAAATACATATTTAATTGAGTCTAAGATTACACCTTTCA
AATCAAAAATTGGATACATACCTTTTTGTGGCGTTCCAAAATTTGATTTT
TCACCCTAATCTTCTATAAAAAACTATCTTACTCTGGTTGTAGACCCTTT
TCCGCAAAGTATATTTTGGTACACGCCTATTGAATATTTGATGTGAGTTT
TCCACCTGAAAGATATCTCCTTTATATACACTCCACGCCATCTACGCCAC
AAAACATCTGCTCTTCTTCTTTGTAGCACTTTAGGTTAAAGTGTATTACA
TGGTGTTTTTTTATAAGAACATCCAAAATTTCTTGAAGCTTTCGGATGTA
ATCAACTTTTTTAGTTTTAAGCCTTATTCTTAACGGTTTCTTATTTTCAT
CGGTTTTTTTTTAGTATTTTTGTCCATTTTTCTGAGAAAATTCTTTTAGA
GACTCCAAAGCCTGATAATGTTCTTAACTTGTTCTCAATATTTTGGCCCT
CGAAGCCTTTTGTTCTTATATAGTTTGTTCTTATAAAGAAATGTGTATAC
ACAATGTTTCCGACCCATCCCCCGTATCGACCAGTGTGTTGAGTCATATT
ATTATTACTTACGAGCGTTTGTTTTTAAAGTATAAAATATTCTAATAAAC
CTTCTTTTATAAAAATATTTTTACTTTATGATTTCAAACAACTGGTCAAG
ATGATTTACCGCAAAAACATGACAAAATTCTGTAAATTATATAATATACC
TAGAATACTACGCAAAAGATTGAAGCTAAATATTTTGAGCGTCTCAAAAA
CGTACATTTCACTTTATCTTAAAAATGTTTAAATTTAAAATTTAGGATTA
TAAATCTAACTTTCAAACTTACTAAACAATCAGAGAATAATTTTCAATTT
CCGCGACTCGCTCTATCCATTTTATGTAATCAATTTTGTGCAATTTCACA
GTATATACTACAAAAAAGTGTTCAAATATTAAGGACGCGTGTACGTATAC
GTGTACGCCTCAAGTGGCTCCGCCCGCTTAAACAAAAAATAGGAAAGGTT
AAAGGGTTGAAAAATCGAGTTATTTTATTCTTACGAACAGCAAAATGCTT
ACTTTATTATGAATTATTTTTTTATAATTCATTAGATTTCGGCCATTATG
GAGAAATTTGAGAAGCAATCGGAACACCTAGACGTTCATACATCTGTAAG
TATTTTAATCATTTCTTTCCGATTTTTGATTGGCTCACGGAAGAATCACG
GACAATATATGCATATGTGGCTTTTCCAGAAACAAAATTTTCCTGTCATG
TTGAAGGAATCTTCCTGTTTGAATTATTGAGATGGTACTTTCCCTGTATT
GTTGGCTCAACTTTTTATTGACCCTATGGAATTTCTAGTTTTTTTTCAGG
GTCTTGTCACACCCTTGCAAAAGGGTGGTAAACATTACCCCCCTTCGCCT
TCAGAGGTTTACTGTGCCCGTAAGAAAATTATGACCAGCTGTTATCGGGT
TAGCACAAGAGTGATGACATCTTTTTGTTCACTTAGGTGATGGACGACAC
TATGGGAGCAGCTACCACTTTAAGTACGCCGCAAAACCAAGTTGATTCAT
TGATACAACAAGTGGCTGACGAGAACGGGCTAGAGGTCATGGACCAAATG
TCCGAATTACAGCCTGGTACCTCAACTCTCGCGTCTACATCATCAAAAGA
AGCAGATCATGGAAGTAAAGATTCAGAGCTAGATAAAAGGTAAGTTTTGC
TATAATAATATCAGTTTATCTAAAAAGACCTTGCGAAACCTAGCCACCGT
GTTATCAATGAAATTTACTCAAGTTTTGAAGTATTAAAAGATCTACAGCA
CCTGACCCCGAGAATGTAGGTTTCTCATTTTTTAGCATGGTAGCCCTAAC
GATAGTTCAACTTCATAAAAAGTTGTTTCAGAGCAAAATGTTACATATTA
CTGATTATTTCTAGACATAAAGTTTTAACTTGAATTGATTTTTTCAGGCG
AAAATCTGAATCGAAGTTAATTGGATACTACTCGAATTGAGACATTTTTT
AAATAAATCCTCTCTAAATGGAAATCTATTGGAATTAAGTTATGATGATA
TGGTATTTTCTTATTCCTAATGAACTAAGGAAATGTGGAAAATAGTCCAT
TTCAATATTTATTGTTCTAAATTAGATATTTTAACGAAAATGTTGTTAAC
CCTTTTGGGGTTAGTTGACCTACAATTTGGGAGCCTTCATAACCCGACAT
AAAAAGTCTGTCAAATTATATAAAACTTTTTTGTTGTACTTTCATAACAT
GAAAGCATTACCTGAGAGATGATTAATGTAATTAGAATTAACTAATATAA
TTTCTATCCCCCTTGGGAATTTAGTAGAAATTTTTGACCCGATGTGGGAA
AAGTTCCACCGGGGCTGTGAGGCAGGGGTGTTGTTACATTTTAACACAGA
ATCTTCAACCTACAAAATAAAAACAACTTTCTTGTCTCTTCTTTTCGTCC
TTTCTTTTACTTTTCGTTATTTGTAGCACGATAAAATTAATATCTTTGTT
AATTTTTTGTCAGAGTATATTTCTAAAGTATGAATTTCACTTAGAGAACA
AAAATTTCCGATGAATACTGAAATTTCGCTCTTAGCAACCGAATCTTTTC
ACCTACATTATGGGGGTTAAAAAGCGAAAAAATCCAATTTTCAGAATGAC
AAAAGCTCTTTAGAATATTTTTTTGGCATAAAATATTTCTAAAATTTCCT
GTTATAATTAATTCAATCGAAAAAATATCAACATTTTACTATTACTAGAT
TTAAAGCCATAAAAACAAACCTACATTCTGGGGATTATAACGAAAATGGG
AGTCAACTTCAAGGACCAAAAGAATGAGCTTATCTATCAAAAGTAATGAA
ACTAACCCCTGGGAAAGGATTTTGGGAGTTCAAAATTTCGTTTAAACTAT
TCAATATTTTTTTAAATGCAAATCTACATCTCCCAGGTCTGATTCAATTT
TCACCTACATTCTCGGGGTCAGGTGCTGTATGTTTTAGGTAATTCGAAGA
ATGAGGAAAAGTTTTATCTCAACCTAAATTCAAATTGATGAATGAACTAA
ATATAACATACAACCGCTTATCTCCTTAAATTTTAAATCGTTTAGCTAAA
CTTTGATTTTTATCTTTGATTTTTATTTTCATCTACAGGCTTGCCGCACT
GAGGAACTGAGAGATTATTTTTTGGTTTCAAAAGATGTCTTTTAGCGTGA
TTTTGCACAAAGTTGGGCAACGCCTTTGGTTAACTTCTTCACTTAGAAAC
ACAGTACACCATTCATTTGTCTTTGATCCATCAGACTGTTCGACTGTTAT
TGAATTAGACTTCACATTACAAATATTTAATTTTGAGTACTGTAATTGTA
AAAAATTTACACTTTTAAACAACATTGATAATGCTATTCGAACTTCTATT
ATTGGAATCTCCCTGTAATTCGAACAAATATGATTCCCCGTTTGAGTTCG
AATTAGCGAGAGTAAACTGTATAAAAAGTTAGGTCCGGAGAACAACAACT
CGATTTTGTGATAAATTCTGTGCAAACAGACCTTGACAAATATTATGTAC
CCGAAAGGAAGAAATTTTGACGGAAAAAATCTAGCGGATCTGTCCGAATA
AGTTCCCGCTAAATTTAATTTTTCAAGACATTCGTCAAATTAAATTCTCT
CTTAAAAAAACTTTTTCAGCCCTCCCCAAAATTTAATTCCCGTCAAAATT
TCTTCACGTTTGGGTCAGTTTCTGAACGGTTGAGTTCTTCCAATAACGTT
ACGTTTCAATGCGTGCTCTTGCCATTTGAAAGAACCATGAAAAATATTGT
CAAAGAGGTTACAGTATTTGTAAAATTTCGTTTATTCAATTCCGATAACC
AAGTTTGAAAATAAAAATGAGCCAATATTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038208XLOC_038208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060842-exon-scaffold_349-1575043694:276087..276211TCONS_00060842-exon-scaffold_349-1575043694:276087..276211Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1575043694:275446..275523TCONS_00060842-exon-scaffold_349-1575043694:275446..275523Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1575043694:274419..274565TCONS_00060842-exon-scaffold_349-1575043694:274419..274565Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1575043694:273861..273929TCONS_00060842-exon-scaffold_349-1575043694:273861..273929Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1575043694:270767..270826TCONS_00060842-exon-scaffold_349-1575043694:270767..270826Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1575043694:270223..270425TCONS_00060842-exon-scaffold_349-1575043694:270223..270425Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1575043694:268029..268773TCONS_00060842-exon-scaffold_349-1575043694:268029..268773Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1510915933:276087..276211TCONS_00060842-exon-scaffold_349-1510915933:276087..276211Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1510915933:275446..275523TCONS_00060842-exon-scaffold_349-1510915933:275446..275523Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1510915933:274419..274565TCONS_00060842-exon-scaffold_349-1510915933:274419..274565Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1510915933:273861..273929TCONS_00060842-exon-scaffold_349-1510915933:273861..273929Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1510915933:270767..270826TCONS_00060842-exon-scaffold_349-1510915933:270767..270826Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1510915933:270223..270425TCONS_00060842-exon-scaffold_349-1510915933:270223..270425Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1510915933:268029..268773TCONS_00060842-exon-scaffold_349-1510915933:268029..268773Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1491911889:276087..276211TCONS_00060842-exon-scaffold_349-1491911889:276087..276211Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1491911889:275446..275523TCONS_00060842-exon-scaffold_349-1491911889:275446..275523Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1491911889:274419..274565TCONS_00060842-exon-scaffold_349-1491911889:274419..274565Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1491911889:273861..273929TCONS_00060842-exon-scaffold_349-1491911889:273861..273929Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1491911889:270767..270826TCONS_00060842-exon-scaffold_349-1491911889:270767..270826Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1491911889:270223..270425TCONS_00060842-exon-scaffold_349-1491911889:270223..270425Clytia hemisphaericaexon
TCONS_00060842-exon-scaffold_349-1491911889:268029..268773TCONS_00060842-exon-scaffold_349-1491911889:268029..268773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:268029..276211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.1184	22.5413	15.8784	21.4467	38.0416	36.6448	39.089	43.407	18.25	21.3949	7.89955	10.5381	14.4969	9.2097	14.4937	16.6132	20.7131	16.2836	15.2301	15.9428	4.11542	8.66814	0.723714	3.17422	46.9691	47.6281	6.83689	0.985273	5.91905	0.510004
Blast
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BLAST of TCONS_00060842 vs. Swiss-Prot (Human)
Match: CHM1A (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.074e-67
Identity = 122/194 (62.89%), Postives = 160/194 (82.47%), Query Frame = 3 
Query:  120 LKFASKQLXXXXXXXXXXXXXXXXXXXXXXXXXNIEGARIYAENAIRKKNESLNYLRMASRVDAVASRVQTGVMMKSLTKTMGSVVKGLDKALSSMDLGKISAIMEKFEKQSEHLDVHTSVMDDTMGAATTLSTPQNQVDSLIQQVADENGLEVMDQMSELQPGTSTLASTSSKEADHGSKDSELDKRLAALRN 701
            LKF +KQLE+ +KK EK+ KA+QAK+KKA+ QKN+E AR+YAENAIRKKNE +N+LRMASRVDAVAS+VQT V MK +TK M  V K LDKALS+MDL K+S++M++FE+Q ++LDVHTSVM+D+M +ATTL+TPQ QVDSLI Q+A+ENGLEV+DQ+S+L  G S +  +S +     S++ +L +RLAALRN
Sbjct:    8 LKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVR-----SQEDQLSRRLAALRN 196
The following BLAST results are available for this feature:
BLAST of TCONS_00060842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM1A3.074e-6762.89Charged multivesicular body protein 1a OS=Homo sap... [more]
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