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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060839 ID=TCONS_00060839|Name=TCONS_00060839|organism=Clytia hemisphaerica|type=transcript|length=1564bp
CaaaggtctgcgattcagactaagcTTAAAATATGTTCTTACTTTCAGTT
TTTGCGATTTTAGcgcttttggattgttataggtaaAATACTTAATATGT
TTAGCTGGAAATCTTCAATCATtagaaaagttgattttttttaaattaaa
aaaagattggCAAAAACTTTCCAAACTAGATTTACAGtatcgtgatgcgt
gattttaCGCACGAAAAAAAACGACTTTAGtttgtttctaactgttcaTA
ACAAAAACGCTCAGCAATGAAGACTAAAAAGTAattgaaagagaaaacat
tACACCATCAAATTAGTATGATGTAATGTTTCCTCAAAAAATCATACACT
CAACGTTTAGTTTTATAtacatttctttcttaaaatcaCAACTAATTCAA
TTCTACAATTTTTCTAGgattattaattttaaaaattttattgttttttt
gaaaaatattttcaatttttttttcatagtaATCTATCCTATATACAACA
GTCAAACATTTTAGTAATTTACTTTTCAGACTTAATTACAAACGAGATCT
ACGGTATTTGTTAGCTTTCAAGCAATATCATCTTGGGTAGAAatttaaga
aggactttctatGGGACCAAAGAAAGGGcATGTTGGTTATGAATGCGGCG
AGTGCGACAAGTTTGAGCATATCCACGATTTTTCAAAAGACGTCTTCGTT
GCTTGTATTTGATTTTCTCATCTTTGGTAAGATTCCTTAATCTCTTGTTC
AAGTCGCGAACAGAGAGAGTAACAAGTTCTTCATCGCTGACAAGAGCAGT
ATCATCTTCTTTAGGTGGGATATCATCATTGAACAAAACGACACTGTCAA
TGTCAATCTcgtcatcatcgtcatcatcatcgTGTTGAACTGATAGTGGT
GAAGCTTGTGTGACAAATAATTCAGGTTGTTGTGAATGTGGTGCCTGAAC
TGTCATTGCAGTGTTCTGTAAAATTGCTTTCAAATAAGaaacatcttgaa
ttttgctatTTGAAGATTGTGAGAGTGTTGGAGATGCCATATAATTGTTG
TTTGTGGTGTAAGCTccattattttcaccttttaaaACATCATCCATAAA
TTGTTGGCTTTCAATCTTAGCTTGTGCAAGTTGTTGTCCTTGAAGAACGG
AATCAATAAATTGTTGACTTTGAATTTTGGTATTGTCTAAGTTGGTGTAT
TGATTGTAATACTCGGGTGATGGGTAAGGCTGTTCTTGATACATGAACGT
AAATTTGTTTTCTTCCTCTTCACCGTTTTCAGAATAATCGTTATCCAATG
GACTTGGTGTCATGAAATCGTTACCGCCTTGGACTATTTCAGATATACAA
TCCCAGAATTCGTTGATGTTGGTTTGTTGTTCTGGTACTTCGCTCAtctg
taaaaattaaaaaaataaattgttaTTAACCATGCTTACAAATCAAAACA
TCTTTATTTAAATTAAACGTTAAATTCAATCTGGTCTAGATTTTTGCTTA
TTTGTGTAAATAccatgaaatttgaatttctgcTTACCTTTACAGATATT
TTTGAGTGGTGAAA Run BLAST on NCBI transcript from alignment at scaffold_349:167404..169683- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060839 ID=TCONS_00060839|Name=TCONS_00060839|organism=Clytia hemisphaerica|type=transcript|length=2280bp|location=Sequence derived from alignment at scaffold_349:167404..169683- (Clytia hemisphaerica)
CAAAGGTCTGCGATTCAGACTAAGCTTAAAATATGTTCTTACTTTCAGTT
TTTGCGATTTTAGCGCTTTTGGATTGTTATAGGTAAAATACTTAATATGT
TTAGCTGGAAATCTTCAATCATTAGAAAAGTTGATTTTTTTTAAATTAAA
AAAAGATTGGCAAAAACTTTCCAAACTAGATTTACAGTATCGTGATGCGT
GATTTTACGCACGAAAAAAAACGACTTTAGTTTGTTTCTAACTGTTCATA
ACAAAAACGCTCAGCAATGAAGACTAAAAAGTAATTGAAAGAGAAAACAT
TACACCATCAAATTAGTATGATGTAATGTTTCCTCAAAAAATCATACACT
CAACGTTTAGTTTTATATACATTTCTTTCTTAAAATCACAACTAATTCAA
TTCTACAATTTTTCTAGGATTATTAATTTTAAAAATTTTATTGTTTTTTT
GAAAAATATTTTCAATTTTTTTTTCATAGTAATCTATCCTATATACAACA
GTCAAACATTTTAGTAATTTACTTTTCAGACTTAATTACAAACGAGATCT
ACGGTATTTGTTAGCTTTCAAGCAATATCATCTTGGGTAGAAATTTAAGA
AGGACTTTCTATGGGACCAAAGAAAGGGGTGAGAAGGATGTTTTAAATCA
TTTCAATTCAAATGGAATATCTTAGTATCTTGTTTAAGTCATTACGAAAA
ACTATGTACATATTTACAGTGTTATAAATATATTTTCTTTATGTCCCGTT
TTATAAAAATTAAAAGGAAAGATGTTCTAATAAATCTCAAAATAAAAGGC
TAAATAAAATTTAATATCCTATGAAGTGTTGTGTGCTTTGTTTTTTACTA
AGCTTGAACGGAATCCTTTCGCTTTTCACGCTCAATCTTGGCTTTCTTGA
TGACAGCTTTCAAGTTTTCNAAGCAATATCATCTTGGGTAGAAATTTAAG
AAGGACTTTCTATGGGACCAAAGAAAGGGGTGAGAAGGATGTTTTAAATC
ATTTCAATTCAAATGGAATATCTTAGTATCTTGTTTAAGTCATTACGAAA
AACTATGTACATATTTACAGTGTTATAAATATATTTTCTTTATGTCCCGT
TTTATAAAAATTAAAAGGAAAGATGTTCTAATAAATCTCAAAATAAAAGG
CTAAATAAAATTTTAATATTCTATGAAGTGTTTTGTGTTTTACTAAGCTT
GAACGGAATCCTTTCGCTTTTCACGCTCAATCTTGGCTTTCTTGATGACA
GCTTTCAAGTTTTCATACTTTGTTTTGTAGAGATTTCTCTCCAAGGTAAT
TTGTTGTAATACTTCTTTGAGTTTTTCATTTTCAATTATTTTAGCATGTT
GGTTATGAATGCGGCGAGTGCGACAAGTTTGAGCATATCCACGATTTTTC
AAAAGACGTCTTCGTTGCTTGTATTTGATTTTCTCATCTTTGGTAAGATT
CCTTAATCTCTTGTTCAAGTCGCGAACAGAGAGAGTAACAAGTTCTTCAT
CGCTGACAAGAGCAGTATCATCTTCTTTAGGTGGGATATCATCATTGAAC
AAAACGACACTGTCAATGTCAATCTCGTCATCATCGTCATCATCATCGTG
TTGAACTGATAGTGGTGAAGCTTGTGTGACAAATAATTCAGGTTGTTGTG
AATGTGGTGCCTGAACTGTCATTGCAGTGTTCTGTAAAATTGCTTTCAAA
TAAGAAACATCTTGAATTTTGCTATTTGAAGATTGTGAGAGTGTTGGAGA
TGCCATATAATTGTTGTTTGTGGTGTAAGCTCCATTATTTTCACCTTTTA
AAACATCATCCATAAATTGTTGGCTTTCAATCTTAGCTTGTGCAAGTTGT
TGTCCTTGAAGAACGGAATCAATAAATTGTTGACTTTGAATTTTGGTATT
GTCTAAGTTGGTGTATTGATTGTAATACTCGGGTGATGGGTAAGGCTGTT
CTTGATACATGAACGTAAATTTGTTTTCTTCCTCTTCACCGTTTTCAGAA
TAATCGTTATCCAATGGACTTGGTGTCATGAAATCGTTACCGCCTTGGAC
TATTTCAGATATACAATCCCAGAATTCGTTGATGTTGGTTTGTTGTTCTG
GTACTTCGCTCATCTGTAAAAATTAAAAAAATAAATTGTTATTAACCATG
CTTACAAATCAAAACATCTTTATTTAAATTAAACGTTAAATTCAATCTGG
TCTAGATTTTTGCTTATTTGTGTAAATACCATGAAATTTGAATTTCTGCT
TACCTTTACAGATATTTTTGAGTGGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060839-exon-scaffold_349-1575043694:169056..169683 | TCONS_00060839-exon-scaffold_349-1575043694:169056..169683 | Clytia hemisphaerica | exon |
| TCONS_00060839-exon-scaffold_349-1575043694:167404..168339 | TCONS_00060839-exon-scaffold_349-1575043694:167404..168339 | Clytia hemisphaerica | exon |
| TCONS_00060839-exon-scaffold_349-1510915933:169056..169683 | TCONS_00060839-exon-scaffold_349-1510915933:169056..169683 | Clytia hemisphaerica | exon |
| TCONS_00060839-exon-scaffold_349-1510915933:167404..168339 | TCONS_00060839-exon-scaffold_349-1510915933:167404..168339 | Clytia hemisphaerica | exon |
| TCONS_00060839-exon-scaffold_349-1491911889:169056..169683 | TCONS_00060839-exon-scaffold_349-1491911889:169056..169683 | Clytia hemisphaerica | exon |
| TCONS_00060839-exon-scaffold_349-1491911889:167404..168339 | TCONS_00060839-exon-scaffold_349-1491911889:167404..168339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:167404..169683 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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