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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060835 ID=TCONS_00060835|Name=TCONS_00060835|organism=Clytia hemisphaerica|type=transcript|length=777bp
GTCGATGGTTATTTGTTGGAGAACAAAAATTGACGAGCAGgggtttttca
ttttcaccaaTAGTATTGATATAATTGCCGTCAGTATAATCAAAAATAGT
ATCGTTGTTGAATCTGTATATAAACTCGTTTTCGATGCATTTTGTCCTGT
TTCTGTTTGGTAGCCAGTCGTCCTGTTTGCATTTCTTGCAAATGGTGCTG
CCTTCTTTGTCCTTTATTAGTCCCTAAAGGACATTGTGGACAGTAGCCAG
AGTCTATTTTATTTGAATGAGTTCCTTTTGGACATTGCTGGCATCTAGTC
CCATGAACGCTGTATGTTCCTTTGGAGCATGCATTGCATGATGTCTTGTC
TTTTGATACTGCTCCAGAACATGTTTTACAGTGAGATTCTGTAGACCTTA
GGTTATCTGAGTATGTACCAGAAGGGCATTCTCTACATTGTGTTTCGCTA
TACTTAAACGTTCCTGTAGGACACAATTGACACAATGTCCCATTTATGGC
AATACCTGAATTACAGAAATGACATTTATCGGATCCTAAAGGTGAATAAG
TACCTAAGCGACATGTTTGACATTCTTTCCAGCCGAACCGAGCGAATGTT
CCCTTTGGGCATTTCGTACATGACTTTCCGTCTGTGGTTGATCCGGTTGG
ACATCTTATACACGAATCTAAACTTGCCCAAGGTTTGTATGTACCCTTGA
GGCATTGACGACATTCTGTCTCATTTAATGGTTTATATGTTCCTATGGGA
CACATCCTACAAGAAATCCCATCTGTG Run BLAST on NCBI transcript from alignment at scaffold_349:132844..133673- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060835 ID=TCONS_00060835|Name=TCONS_00060835|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at scaffold_349:132844..133673- (Clytia hemisphaerica)
GTCGATGGTTATTTGTTGGAGAACAAAAATTGACGAGCAGGGGTTTTTCA
TTTTCACCAATAGTATTGATATAATTGCCGTCAGTATAATCAAAAATAGT
ATCGTTGTTGAATCTGTATATAAACTCGTTTTCGATGCATTTTGTCCTGT
TTCTGTTTGGTAGCCAGTCGTCCTGTTTGCATTTCTTGCAAATGGTGCTG
CCTTCTTTGTCCTTTATTAGTCCCTAAAGGACATTGTGGACAGTAGCCAG
AGTCTATTTTATTTGAATGAGTTCCTTTTGGACATTGCTGGCATCTAGTC
CCATGAACGCTGTATGTTCCTTTGGAGCATGCATTGCATGATGTCTTGTC
TTTTGATACTGCTCCAGAACATGTTTTACAGTGAGATTCTGTAGACCTTA
GGTTATCTGAGTATGTACCAGAAGGGCATTCTCTACATTGTGTTTCGCTA
TACTTAAACGTTCCTGTAGGACACAATTGACACAATGTCCCATTTATGGC
AATACCTGAATTACAGAAATGACATTTATCGGATCCTAAAGGTGAATAAG
TACCTAAGCGACATGTTTGACATTCTTTCCAGCCGAACCGAGCGAATGTT
CCCTTTGGGCATTTCGTACATGACTTTCCGTCTGTGGTTGATCCGGTTGG
ACATCTTATACACGAATCTAAACTTGCCCAAGGTTTGTATGTACCCTTGA
GGCATTGACGACATTCTGTCTCATTTAATGGTTTATATGTTCNATACCCT
TGGGGCATTGACGACATTCTGTCTCATTTAATGGTTTATATGTTCCTATG
GGACACATCCTACAAGAAATCCCATCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060835-exon-scaffold_349-1575043694:132962..133673 | TCONS_00060835-exon-scaffold_349-1575043694:132962..133673 | Clytia hemisphaerica | exon |
| TCONS_00060835-exon-scaffold_349-1575043694:132844..132908 | TCONS_00060835-exon-scaffold_349-1575043694:132844..132908 | Clytia hemisphaerica | exon |
| TCONS_00060835-exon-scaffold_349-1510915933:132962..133673 | TCONS_00060835-exon-scaffold_349-1510915933:132962..133673 | Clytia hemisphaerica | exon |
| TCONS_00060835-exon-scaffold_349-1510915933:132844..132908 | TCONS_00060835-exon-scaffold_349-1510915933:132844..132908 | Clytia hemisphaerica | exon |
| TCONS_00060835-exon-scaffold_349-1491911889:132962..133673 | TCONS_00060835-exon-scaffold_349-1491911889:132962..133673 | Clytia hemisphaerica | exon |
| TCONS_00060835-exon-scaffold_349-1491911889:132844..132908 | TCONS_00060835-exon-scaffold_349-1491911889:132844..132908 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:132844..133673 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011641 | Tyr-kin_ephrin_A/B_rcpt-like |
| IPR009030 | Growth_fac_rcpt_ |
Blast
The following BLAST results are available for this feature:
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