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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060832 ID=TCONS_00060832|Name=TCONS_00060832|organism=Clytia hemisphaerica|type=transcript|length=635bp
AGGATTATGGGATATGCCAgaGCAAACGAGGTGTTGTTAGCTGGGCGTAA
ACTGACCGCCCAAGAAGCTTTTGATCGCGGTCTTGTCACTGATATCATAC
CACAAGGAGAATTCCGTGAATTCATTGCAGAAAAAACCAAATATCTCGCT
GGATTGCCACCTAAGAGTGTGATGTATTCAAAGGCTTTGAACCGATTACG
CGAGAAGGAAACGTTAGAACGCGTCAACGAGGAAGAGTGCGTTCGATTAG
AAGAACGGTGGCTTTCTGAAGAGTGCATGAACGCTGTCATGTCCTTCCTG
GCGAAAAGTTCTAAAATGTAAAGAAATGCAGTTGAAAATTCTCTTCTTCT
TGATATGCGTGAGTCAAGATGCTGTTATATTTTCTAACGGAATCAACCGA
AAAAGCCGAATTTTTTACAGATTTTGTCAAATCCTggttttttcgggtgt
ttccgttaGAAAAATACGCATATCGAGAATATGATTTGATACCAAAGGAA
TTGGCATGTGAGCCGtatttgaagggacataaactaAAACCACATTGTTC
TTGCCTGTACTCTAAAGGTTTAAAAAGTTCTAGTTCCTTCTTTGTTAGAA
GCTTTATGAGGTGGCGTAAACGCACGACACTGTAC Run BLAST on NCBI transcript from alignment at scaffold_349:110822..115191- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060832 ID=TCONS_00060832|Name=TCONS_00060832|organism=Clytia hemisphaerica|type=transcript|length=4370bp|location=Sequence derived from alignment at scaffold_349:110822..115191- (Clytia hemisphaerica)
AGGATTATGGGATATGCCAGAGTATGTTTTCTTTGATCTCATTTCCTTAT
ATAGTGGACACTGTTATTTGAATCTTTTTCCCGAGGATTATGGGATATGC
CAGAGTATGTTTTCTTTGATCTCATTTCCTTATATAGTGGACTCTGTTAT
TTGAATCTTTTTATAATTCTCAGATTCTGTCAAGAAGCCTCAATCTGGAA
ATTCTATCTATTATACCAGAGTATGATTTCTTTGATATCATTTTCTCGGT
TATAAAGTGGACTCACTATTTCGAACTTCTATTATTCGAATCTTTTTATT
ATTCAAAATGATTCTCAGTTCCTGTCAGGGAGTCTCAATCTGGAAATTCT
ATCTATCATTCGAATCTACGTTGCTGTTAAGGCTCTAATGGCTTTAACAC
TTTAATGAAAAGTGTTGACTTTTTAACACCTGAATTATGTATGCCCGTTT
TCTTTTTAGGCAAACGAGGTGTTGTTAGCTGGGCGTAAACTGACCGCCCA
AGAAGCTTTTGATCGCGGTCTTGTCACTGATATCATACCACAAGGAGAAT
TCCGTGAATTCATTGCAGAAAAAACCAAATATCTCGCTGGATTGCCACCT
AAGGTAAATTAAGTGAAATTTTCCTTTGCTGTGTAGAATAGACCTTTTCA
TAAAATTACGTTAAGAACATCACTTGCCTCGTTTTGAAATTATTGCCATG
GTTATTAACTCCCAGCGGATTTTATCAAAACTACTTCCTATTCATAAAAA
AATCATTTAATGTCTCAAGAGACATAATCACCATGGTAATTATTTGAATA
CGTGGCAAGTGATGTTTATGACGTACTTAAGGCGTACAAACTTTCGCGAG
TAGAAACTTTTGCGAGAACGAAAAATTTACTTTCGCGAATTTAACGGAAA
AATATTTTTCGCGAGCATAAACTTTCGCGAATCAAGACGTAAAATTGAGA
ATTTTCACATGAAAAAATTTCTTAGAGGGACAAATACTTCTTGGATTGGC
TTGAAACATTTGTCCTTTGACTTATTAGTCTTTTAGTAGGCTAAAAAGTG
CCATAAAAGTTACATTTTATTCAAAGTTTGAAGTTTTACAGATTTTCTAT
TTCGTCAAGAATTTTTGGCGAGCATAAACTTTCGCGAATGGCCCTTCCTA
TAATTTTTAAAGACATTTACTTTCGCGAAAAGGGCCAAAATTCGCGAAAG
TTTCTGCTCGCCAAAGTTTGTACGCCTAAAGTATTGCGAGCCTGATACAG
GGGTAGACACTTGCTTATAAAAACATGTATGTGTCTTGGCAGTCTTGTTT
ACTATACATTACCTCGTAGAGAACTCTTGAAGAATATTTCAACTTATAAC
ACCTAATACAGTGTATCCGGAACAAAGCGGTGGAACACGATTCATATAAA
CAAAAAATCTTGATAATTTATACCAATCTTAACCTTATGCTCATTTTGAT
GGCGCCTTTGTGAATGGAATGGTTATTGATTGGACAAAGAAACTTCGATG
CCATTTCAATCATTCTAAGCTCCAGTAGGCTCCAGTGACATAATGAGTTT
AGAGGATTTAATTTTATATAAGATTTGTTTCCTTTTTTTTTTTGAGAGAG
ACACTGTGTATGTGTTTACCATTTTATAAGTCATTCTCGTTTTCAGTGGT
CACCCAAAAAAATTACAATTTCTGGAAGATTTTTACCTTGAAAAACTAGT
ATACCTTTTGCTAATCACGATGTCATATTGAATAATTTAAAAACTCCAGC
CAATTCAAGCATCAAAACAATAAAACAAAAAACTTGGTACACGATTTAAC
TACATATTCCTCAGTGTTTAATTGTTTTGATGCTGGAGTTTTGAATTATT
CAACATGACAGCGTGATATGCCCTTTCATGAATTATTTTAAGTGAAACGA
CTGCCTCGTTTTGAAGCCATTGTTACCAAGGTGATTAAATCCCTTGAGTT
TTCAAATGTCTAACAGTAGACTTCTTCAGTTGGGAATCATAATAGCATTA
TTTTAAAAACGAAGTAAGCGTTGTTCGTGACGTAATTTGGTTCACCCAAT
GAATCATNTTTATTTTAAAAACGAGGTATGCGTTGTTCGTGACGTAATAT
GTCTATTAGCAAAAGGTTAGTTGGTTCACCCAATGAATCATTTTTTTTAA
TTCTTCCTTTACTGTCCTAAAGGACTTAAAGACTACTAGCTGTATGCGCA
GCGTCGCACGCTGCGTGTCCCATTCCAGTGAATCACTACACATCTAAAAA
ATTCGAACGGCAGAAAGATAGCCACCGATTGATGATTTGATTTTGATTTT
AGGAAGTAAAGGAGAAAGAAGATAACATTGCATTGTAATTTTTAACCACA
ATTAAATAATGGCTTAACAAAAGTATATTTTAGATCCTTTTAGCCATCGT
GGCTATCCCATTGAGTTTCAAGCCCGGAGGGCTAGAGGTCAATCTCTAAC
CTTTCTCAGGCAAGAAAAATTGAAGCCTTAAAATATTTGCCGTATTTTTG
ATGACGGATTGAATCTAGCAATTCCTTTGTTTTCGAGTGATATTTTTTTT
CGAAATTAAGTGGTAAATTTTAGTTTCAATCTATCATTTGTGTAAAAACC
AGGCGGGTCGCTCAAGACCGCGCAACTTTGGTAGGATTTGTTGGCTTCAA
ATCCTACCAAAGAGATTGACCTCTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGACCAAAGGTCA
AACCGGGCGGCAAAATATTATACAAAAATGTTTTGAAAAGTTTTGAAAGT
GATAGGGAGCCGCTATTGTAAACAGAAAGTTTAGATTTTCAAAAACTTTT
TACAAAATGTTGTAAACACACACGTTTAAGCGTATTAATATATAGAAGAT
TGACTTCCAAACCCGAAGGGCTAGACTCGAGACTCGTGGATGGGAAATGA
AGCCACTTATCTCCCCTCCAGAACGCCCCCGCGTAGTTTTTACACAAACG
CCGGATTGAAAGTAAAATCTATCGCAGTCCTCAAAAACAAAGGAACCGCT
AGATACAATCCGTCGTCATTATTGCGGCGCGTTCTAGAAGCGTTCTGGAT
GGGAAATAAGTGGCTTCACTTTTTCCTGCCTGCGAAAGGTTAGAGATTTA
CTCTAGCCCTTCGGGCTTCAAACTCAATGTTATTTTCTTATTATCTACAG
AGTGTGATGTATTCAAAGGCTTTGAACCGATTACGCGAGAAGGAAACGTT
AGAACGCGTCAACGAGGAAGAGTGCGTTCGATTAGAAGAACGGTGGCTTT
CTGAAGAGTGCATGAACGCTGTCATGTCCTTCCTGGCGAAAAGTTCTAAA
ATGTAAAGAAATGCAGTTGAAAATTCTCTTCTTCTTGATATGCGTGAGTC
AAGATGCTGTTATATTTTCTAACGGAATCAACCGAAAAAGCCGAATTTTT
TACAGATTTTGTCAAATCCTGGTTTTTTCGGGTGTTTCCGTTAGAAAAAT
ACGCATATCGAGAATATGATTTGATACCAAAGGAATTGGCATGTGAGCCG
TATTTGAAGGGACATAAACTAAAACCACATTGTTCTTGCCTGTACTCTAA
AGGTTTAAAAAGTTCTAGTTCCTTCTTTGTTAGAAGCTTTATGAGGTGGC
GTAAACGCACGACACTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060832-exon-scaffold_349-1575043694:115171..115191 | TCONS_00060832-exon-scaffold_349-1575043694:115171..115191 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1575043694:114589..114732 | TCONS_00060832-exon-scaffold_349-1575043694:114589..114732 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1575043694:110822..111291 | TCONS_00060832-exon-scaffold_349-1575043694:110822..111291 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1510915933:115171..115191 | TCONS_00060832-exon-scaffold_349-1510915933:115171..115191 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1510915933:114589..114732 | TCONS_00060832-exon-scaffold_349-1510915933:114589..114732 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1510915933:110822..111291 | TCONS_00060832-exon-scaffold_349-1510915933:110822..111291 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1491911889:115171..115191 | TCONS_00060832-exon-scaffold_349-1491911889:115171..115191 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1491911889:114589..114732 | TCONS_00060832-exon-scaffold_349-1491911889:114589..114732 | Clytia hemisphaerica | exon |
| TCONS_00060832-exon-scaffold_349-1491911889:110822..111291 | TCONS_00060832-exon-scaffold_349-1491911889:110822..111291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:110822..115191 - |
Blast
BLAST of TCONS_00060832 vs. Swiss-Prot (Human)
Match: ECI2 (Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4) HSP 1 Score: 101.293 bits (251), Expect = 5.060e-25 Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 RIMGYARANEVLLAGRKLTAQEAFDRGLVTDIIPQGEFREFIAEKTKYLAGLPPKSVMYSKALNRLREKETLERVNEEECVRLEERWLSEECMNAVMSFLAKSSKM 318
+IM A+A E+L+ G+KLTA EA +GLVT++ P F++ + + K A LPP ++ SK + R RE+E L VN EEC L+ RWLS+EC NAV++FL++ SK+
Sbjct: 289 KIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 394
The following BLAST results are available for this feature:
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