TCONS_00060829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060829
Unique NameTCONS_00060829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060829 ID=TCONS_00060829|Name=TCONS_00060829|organism=Clytia hemisphaerica|type=transcript|length=940bp
ATTGTATCAATCCCAAGAAGCCGCATATCATCACTTCTTGTATCGAACAC
GATTCCATTCTAAACCCATTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGA
TGTTACTTACGTCAATGTTTCAAAAGAGCATGGATTTGTTGACCCAGATG
ACGTGTTGCAGGAGATTCGAGATGAAACAGTCTTGGTGACTTTAATGATG
GCTAATAACGAGACTGGTGTTATTCAGGTTtccttttatttcatattaGC
CAGGGAACACggtaaattattgaaaaaaaatgatatcACATAACAGAGCA
TTAGGTTCGCAATCTTTAGAATTTTAAGGTTTTCAAGTCGAGCCTTCGGA
CTAACAAAAAAACCATAACAGCATCATctattattaaatattttgaaaat
tttcccttttATGACTTGACTCGTTTTAGGTATTCAAAGTTTCTTACTTA
TCTTGTAATATAAAAGTTTTTATTGGTGTTTTCAAACACCAAACCATCGC
GGCTATTAGTGGTTACGCCatctttttttccaattttctctCCTGTATCT
AGAATATATTCCCTACCTTTCTCTTGTTATATTCATGTTTTGACATTAGA
AAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTGTCAAGACGAGATGAT
TTACCAAGGATTGTGCTTCACACTGATGCTGCACAGACCATTGGCAAAAT
ACCAGTCGATGTCCAAGAATTGAATGTGGATTATTTAACCATTGTCGGAC
ACAAATTTTATGGACCTCGGATTGGTGCATTTTGGGTCAGAGATGGACTC
CCATATTTCCCCATGATGCTTGGCGGTGGTCAAGAGTGTGGCAGACGTGC
TGGCACAGAAAACACACCCATGATTACAGGTCTTGGGGAAGCTGCAAGAT
TggtttgtcaaaatttgaagacagaTACCGAATATTTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_349:94045..95493-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060829 ID=TCONS_00060829|Name=TCONS_00060829|organism=Clytia hemisphaerica|type=transcript|length=1449bp|location=Sequence derived from alignment at scaffold_349:94045..95493- (Clytia hemisphaerica)
ATTGTATCAATCCCAAGAAGCCGCATATCATCACTTCTTGTATCGAACAC
GATTCCATTCTAAACCCATTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGA
TGTTACTTACGTCAATGTTTCAAAAGAGCATGGATTTGTTGACCCAGATG
ACGTGTTGCAGGAGATTCGAGATGAAACAGTCTTGGTGACTTTAATGATG
GCTAATAACGAGACTGGTGTTATTCAGGTTTCCTTTTATTTCATATTAGC
CAGGGAACACGGTAAATTATTGAAAAAAAATGATATCACATAACAGAGCA
TTAGGTTCGCAATCTTTAGAATTTTAAGGTTTTCAAGTCGAGCCTTCGGA
CTAACAAAAAAACCATAACAGCATCATCTATTATTAAATATTTTGAAAAT
TTTCCCTTTTATGACTTGACTCGTTTTAGGTATTCAAAGTTTCTTACTTA
TCTTGTAATATAAAAGTTTTTATTGGTGTTTTCAAACACCAAACCATCGC
GGCTATTAGTGGTTACGCCATCTTTTTTTCCAATTTTCTCTCCTGTATCT
AGAATATATTCCCTACCTTTCTCTTGTTATATTCATGTTTTGACATTAGA
AAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTGTCAAGACGAGATGAT
TTACCAAGGATTGTGCTTCACACTGATGCTGCACAGACCATTGGCAAAAT
ACCAGTCGATGTCCAAGAATTGAATGTGGATTATTTAACCATTGTCGGAC
ACAAATTTTATGGACCTCGGATTGGTAGACTACCTACATGTTATTTTATA
AGATCAACCAAAAATTTTGAAGCCTTCGGATGTTCTCTGAGTTTTAATCC
TAAAAATGTTCTTAATATGTTCTTATTTTCATCTTGTCCATTTTCCTAGG
AAATCGGGTGTTTTAAGGTCCACAAAGCCCTAAAATGTTCTTAACTTGTT
CTTAAGATTTTGGCCATTGAAGCCTTACGTTCTTACATAGTCTGTTCTTG
TTAAAAAGTGTGTGCTCTATCTGTAATATTTCTGAAAGGTTTTCCCCAAA
GATCCTTTAGAATTAAAGTTATTCCAGGTTACATCTTCATGAAATCAAAA
ATCCTACAAAACACAATAAAAATACTTAAAAGAACAAGTTCTACAACAGT
TGTTACTATATTTACCTTACTAAATTAGATCATCATTAAAGTTTTAAAAA
GTAATTATTTCCAGCACCTATTTTCTCTTCACCTACTCATGTATAAAACT
TGTTCTTTTCTTTACAATATCCTTTGTTTTCAGGTGCATTTTGGGTCAGA
GATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGGTCAAGAGTGTGG
CAGACGTGCTGGCACAGAAAACACACCCATGATTACAGGTCTTGGGGAAG
CTGCAAGATTGGTTTGTCAAAATTTGAAGACAGATACCGAATATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038199XLOC_038199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060829-exon-scaffold_349-1575043694:94720..95493TCONS_00060829-exon-scaffold_349-1575043694:94720..95493Clytia hemisphaericaexon
TCONS_00060829-exon-scaffold_349-1575043694:94045..94210TCONS_00060829-exon-scaffold_349-1575043694:94045..94210Clytia hemisphaericaexon
TCONS_00060829-exon-scaffold_349-1510915933:94720..95493TCONS_00060829-exon-scaffold_349-1510915933:94720..95493Clytia hemisphaericaexon
TCONS_00060829-exon-scaffold_349-1510915933:94045..94210TCONS_00060829-exon-scaffold_349-1510915933:94045..94210Clytia hemisphaericaexon
TCONS_00060829-exon-scaffold_349-1491911889:94720..95493TCONS_00060829-exon-scaffold_349-1491911889:94720..95493Clytia hemisphaericaexon
TCONS_00060829-exon-scaffold_349-1491911889:94045..94210TCONS_00060829-exon-scaffold_349-1491911889:94045..94210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:94045..95493 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145332	0	0	0.0811579	0.478987	0.306642	0.425754	1.05623	0.377278	0.276189	0	0.421894	0.339237	0.694268	0.173385	0.486441	0.335211	0.591845	0.530205	0.131385	0.254778	0.386632	0.439403	0.567205	0.546998	0	0.585894	0.235963	0.42993	0.11163
Blast
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BLAST of TCONS_00060829 vs. Swiss-Prot (Human)
Match: SCLY (Selenocysteine lyase OS=Homo sapiens GN=SCLY PE=1 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 2.744e-34
Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 3 
Query:  603 VAEICKRIKALSRR---DDLPRIVLHTDAAQTIGKIPVDVQELNVDYLTIVGHKFYGPRIGAFWVR---DGLPYFPMMLGGGQECGRRAGTENTPMITGLGEAARLVCQN 914
            V EI +RIKAL++      LP I++HTDAAQ +GK  VDV++L VD+LTIVGHKFYGPRIGA ++R   +  P +PM+ GGGQE   R GTENTPMI GLG+AA LV QN
Sbjct:  206 VPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRIGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQN 315
The following BLAST results are available for this feature:
BLAST of TCONS_00060829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCLY2.744e-3460.91Selenocysteine lyase OS=Homo sapiens GN=SCLY PE=1 ... [more]
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