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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060799 ID=TCONS_00060799|Name=TCONS_00060799|organism=Clytia hemisphaerica|type=transcript|length=1019bp
GCAGTCATCGAAGAGCCAGCTACTGAAACTGAAACAGTCGTCGATGAGGT
AGCCCCTGAAGTAGAAGCAGTCGCTGAAGATGCAGCCCCTGAAGTAGAAG
CAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCCGTCGATGAGGAGGCA
GCCCCTGAAGTAGAAGCCGTCGTTGAGGAGGCAGCTCCTGAAGTAGAAGC
AGTTGTTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGAGGCAT
CTGCTGGACCAGAGAAACCAGAGCCGAAAACTCTTTGGGAAAAGATTAAA
CGaatcttcaatttttaagtCGTCGGCAACCTCAGTTGACGGCGTAGTAG
TGAAGTAGCGTAGATGTAGGAGCCAAACAGCCATCGCCAGCAGCTGAACC
ATCCATTCCACAAGACCAAGCAGCATTCGACGTGTACAATGCAAATTACA
AATGTCCGGAATATTACAAATACGATGAATTCGCGTTTTACGATATCGAA
AACGATATGCAATCGAGTCGAATCGAGCAACCTAGTGCCTTATAATAGTT
GTTGttttaacaaagaaaattggtgtttttttagattttgttgCTAACTT
GGAACTTGTTCATACTATTTGAAATGTATATTATGGTGTTTGATTGTACA
ATAACTCAATAAATTGGATCTTATGTTCGCGTTGAAATAATGTTTTGGGT
AAATAGTAGTAGATTTTCAAACAATCTCTAGTGATAAACCTTGGAGATGG
AAACACCATTTTGATTGATGGATGTCGCTGATTGGTTCggtagaaattta
tttttacattttagatGTATTAGGTGTTAGTCTTTACAACGAAACTGGTA
GTTTGATAGCAAACCTTTTTAAGATGAACCTAGGTTACTTACTGTAGGTT
ATTAATATTTCCAAATTGTGGAAGATTGAATAGATGCTTATTTGAAAATT
ATAATGTAAATACATTACTTTTCTTAAGTAAAACTGAATATGTTATATGG
CTGATTGCGTCGATTGATT Run BLAST on NCBI transcript from alignment at scaffold_349:783571..788885+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060799 ID=TCONS_00060799|Name=TCONS_00060799|organism=Clytia hemisphaerica|type=transcript|length=5315bp|location=Sequence derived from alignment at scaffold_349:783571..788885+ (Clytia hemisphaerica)
GCAGTCATCGAAGAGCCAGCTACTGAAACTGAAACAGTCGTCGATGAGGT
AGCCCCTGAAGTAGAAGCAGTCGCTGAAGATGCAGCCCCTGAAGTAGAAG
CAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCCGTCGATGAGGAGGCA
GCCCCTGAAGTAGAAGCCGTCGTTGAGGAGGCAGCTCCTGAAGTAGAAGC
AGTTGTTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAGGAGGTAG
CTCCTGAGCCAGAGGTTGTAGCAGAAGAGGCATCTGCTGGACCAGAGAGT
ATGTTGTTAATGCTCTTAAATTTTTACGCCCTTAATAGTTgtctttggtt
tgattttcCCAGCAATCTCGAGTTCGTTATCCTCTGATCTTTAATAAAGT
GCGTCTGAACTTTGCTTTTCTTTCTCTTCCCTTAGAAAAGGGCAAATGAA
TTGAACTTTAGTAACTGCTGCTTTCTTTATCTCCTGCGATTTTCTGAGTC
CTTTTCCTAGCTCTACTTTTCCTATCCACTAATACTGAATACTGATAATA
ATTTTCTGTAATTTATTTGTCCTTTTCTAGAACCAGAGCCGAAAACTCTT
TGGGAAAAGATTAAACGaatcttcaatttttaagtCGTCGGCAAACTCAG
TTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTAACCT
TAGATTAGATTTTCAACTTGGTTGGACATGAATAATTCTAACGAGGGAAA
TCTGTATATTATTTCAACGGTTTCTTATATCAACTTGGCTACTTCTTCTC
TTGCAATTTTAAGGGTGTCAATATTGtctgttttttcttttcaaataacg
TCATTCATCGTCAATTtacctttataaaccctggaccaagctatttCCAC
CatatttgatcggagtttttatgaaagtggtacccgcaaagaattTATAG
TTAAGATTTTGTTTGAcaacaaacggcgctacatcacttGCGTGCAAgcg
aaagtagatctagcgctctcgatgcgggtaccactttcaaaaatattccg
aTCAAAATATGTTGGTTGGCCGGGACTGAGAAACTGCCTCCGGGGTTTAT
GTAAAGCTCAATCAACTATGAATTATGAATCATTTCTAAGTTCAACGTAT
TCTGATAATGTAATATCAAGTCTCAAATTGAATGCAATCCCTCTGTATCT
TTCAATGATCGGAGGGCTTCTTTGAGTCAGTAAcgccatagtataagaaa
gccgcggctggaatgatgacgctattgtttttgtcgttAATGGATGTTTT
ATCTGTGTCTCCGTGATTTATAAGAACTAAATCTAAGCTAGCAAAATCTT
CAACCTGAAAAGTGTTTATAAAATTCAATTAAAGAATAATTACTTTTCAA
GTCTTAGATTTTTCTCACTGCCCTCTAATTAGCTTGTTcgaagtatattc
ttataaattccagataaaattttaaaaatttaggaCCAAATAACGCACAT
TTTAAtacaagaactaattttcaaatgttaaactttGAATGCTTGCCGTC
ATCTCAATACTGTTGATTTTCGAATGAAGTTTTCAAGAATACTGCTTgaa
tattgattttttaataTCAGTAAGAATTGTTCAAAATAATCAGGAAGGCA
CTTCGAAGCACttaattttcttcaagttcttaaagcacTGACATTCTGTT
CGCTCTAATATTTTAAACCGAAactcttttcttttactttgatattatga
atgcgtgaattatcaagagatttgtgtttatgagcaaaattacgTCTTAC
GAGGGACTTTGTTAAAAGTCAGATTAAATTGACAATGGAAATTGTCATtg
aaccataaaaaaattcgttcttacgacatagatagaacaacagaaattca
actgaactcattccagccgcggctttcttatactatggtaacGCTTTTCA
GGTAATTAACGCTCATTACCATATCTAGGCTTTGCTTACTTTTAGGTGTA
CACACTttcacgagcagaaactttcgcgaggtcgaaaaatcgtaACATTN
TAGTAACTGCTGCTTTCTTTATCTCCTGCGATTTTCTGAGTCCTTTTCCT
AGCTCTACTTTTCCTATCCACTAATACTGAATACTGATAATAATTTTCTG
TAATTTATTTGTCCTTTTCTAGAACCAGAGCCGAAAACTCTTTGGGAAAA
GATTAAACGaatcttcaatttttaagtCGTCGGCAACCTCAGTTGACGGC
GTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTAACCTTAGATTAG
ATTTTTAACTTGGACTTCAACAATTCGAACGGGGATATCTGTATATCGTT
CCCATGATTTATATCAACTTGACTACTTCTTTTCTTGCAGTGTTAAGGGT
GTAAATATtgtctgtttttttcttttctaataacGTCATTCATCGTCAAT
TATGAATACagacctttataaaccctggaccaagctatttCCACCatatt
tgatcggagtttttatgaaagtggtacccgcaaGGAATTTATAGTTGAGA
TTTTGCCTGACTACTTCACTAGTATGCAAtaaaaagtagatctagcgctc
tcgatgcggGTACCACTCTCAAAAATATTccgatcaaaatattttggttg
gcCGGGACTGAGAAACTGCCTCCGGGGTTTATGTAAAGCTCAATCAACTA
TGAATTATGAATCATTTCTAAGTTGAACATATTCTGAAAATTTAATATCA
AGTCTCAAATTGAATGCATTCCCCCTGTATCTTTCAATGATCGGAGGGCT
TCTTTGAGTCAGTAATGTTTTTCAGGTAATTAACACTCATTACCATATAT
AGGCTTTGCTTACttttaggtgtacaaactttcacgagcagaaactttcg
cgaggtcgaaaaatcgtaacatttactttcgcgaatttgacaaaaaattt
ttcgtgagcataaactttcgcaaatgaGGCATATTTTTAGTAGAAAATTC
AAGTTTTCGGTGCATAAAACCAGTGTTTGACTTTCGCATAATATCTACAC
TAAATTTTATCCTTGTTATCATCAAGACGTTTACTTTCGCATAAAgggct
aaaattcgcgaaaatcgtgaaagtttctgctcgcgaaagtttgtacgcct
aaagtagttgCCTGTCAACAGTAATATTGTTAAAAGGTTTTTAGGTCGCT
AATGATAAAGAATATTGTGTGAGGTATTTCAAATGACCTGCAACTTATAT
AGCTCGCCTATAACACAAGACTAACTGTGCCGTAGTGTACTCTTCAGACT
TTTTCACTCAGGTTTATTTATCtcaataggccttttcataaattacgtca
cgaacaacacttgcctcgtactcaaacaattaccattgtgattatgtccc
ttgagacattaaatgattcttttatgaatagaaagtagttttaataaaat
tcgCTGGGaattaatcaccatggcaataatttcaaaacgagacaagtgat
gttcataatttatgaaaaggtctatttaaaaagtatttctaatCTTTCTA
ctagttttgcctgaaaatggaaAGACGTGAAAAATTTTCAAGGTATAACG
AGATATTTGGCCTCTAGATATTTTCCAAAGTCCTGAGAGAATCAACCGAA
AACTTTTCAGGACTTAAAGTGCGGATAAGCACACTATAAAAACATTTCTG
ATTAtacctttaatttttttaacgacTTTCCATTTCAAAGCAAATCTTAA
GGTATTAAGGTATGTTTACACCTTTCTTAACACAATATTTTTAATTGGTC
ATATCTACGTCAAAAGTATTTTCTGACAAAAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGG
GGGTGTTAgaaatttctcgaaaaattaacaattcCGGGTGGGGGGGgtcg
tttatttggcacctaagagtaatctTGAAAAAGGGTTGGAATGAAGAAAA
GAAAGGCACAAAATAGTTGGCGCTAAAATTAAGAGCTGATAGTAGTACGC
GCTCATTATCATAACAACTACTTATCATTTTTCTTTGTCACTTTTCTCAG
GTAGCGTAGATGTAGGAGCCAAACAGCCATCGCCAGCAGCTGAACCATCC
ATTCCACAAGACCAAGCAGCATTCGACGTGTACAATGCAAATTACAAATG
TCCGGAATATTACAAATACGATGAATTCGCGTTTTACGATATCGAAAACG
ATATGCAATCGAGTCGAATCGAGCAACCTAGTGCCTTATAATAGTTGTTG
ttttaacaaagaaaattggtgtttttttagattttgttgCTAACTTGGAA
CTTGTTCATACTATTTGAAATGTATATTATGGTGTTTGATTGTACAATAA
CTCAATAAATTGGATCTTATGTTCGCGTTGAAATAATGTTTTGGGTAAAT
AGTAGTAGATTTTCAAACAATCTCTAGTGATAAACCTTGGAGATGGAAAC
ACCATTTTGATTGATGGATGTCGCTGATTGGTTCggtagaaatttatttt
tacattttagatGTATTAGGTGTTAGTCTTTACAACGAAACTGGTAGTTT
GATAGCAAACCTTTTTAAGATGAACCTAGGTTACTTACTGTAGGTTATTA
ATATTTCCAAATTGTGGAAGATTGAATAGATGCTTATTTGAAAATTATAA
TGTAAATACATTACTTTTCTTAAGTAAAACTGAATATGTTATATGGCTGA
TTGCGTCGATTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060799-exon-scaffold_349-1491911889:783571..783783 | TCONS_00060799-exon-scaffold_349-1491911889:783571..783783 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1510915933:783571..783783 | TCONS_00060799-exon-scaffold_349-1510915933:783571..783783 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1575043694:783571..783783 | TCONS_00060799-exon-scaffold_349-1575043694:783571..783783 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1491911889:783817..783868 | TCONS_00060799-exon-scaffold_349-1491911889:783817..783868 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1510915933:783817..783868 | TCONS_00060799-exon-scaffold_349-1510915933:783817..783868 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1575043694:783817..783868 | TCONS_00060799-exon-scaffold_349-1575043694:783817..783868 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1491911889:785743..785831 | TCONS_00060799-exon-scaffold_349-1491911889:785743..785831 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1510915933:785743..785831 | TCONS_00060799-exon-scaffold_349-1510915933:785743..785831 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1575043694:785743..785831 | TCONS_00060799-exon-scaffold_349-1575043694:785743..785831 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1491911889:788221..788885 | TCONS_00060799-exon-scaffold_349-1491911889:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1510915933:788221..788885 | TCONS_00060799-exon-scaffold_349-1510915933:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060799-exon-scaffold_349-1575043694:788221..788885 | TCONS_00060799-exon-scaffold_349-1575043694:788221..788885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:783571..788885 + |
Blast
The following BLAST results are available for this feature:
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