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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060797 ID=TCONS_00060797|Name=TCONS_00060797|organism=Clytia hemisphaerica|type=transcript|length=761bp
CTGTTCGATCTCTGTCAACAGCAAGAACTGTAGCCTGCAAAGTCACCGAT
AAAGCATCTACACCAGTAGTTGAAGTCGCTGCTGAAAACGCGAAATGTAG
CGTAGATGTAGGAGCCAAACAGCCATCGCCAGCAGCTGAACCATCCATTC
CACAAGACCAAGCAGCATTCGACGTGTACAATGCAAATTACAAATGTCCG
GAATATTACAAATACGATGAATTCGCGTTTTACGATATCGAAAACGATAT
GCAATCGAGTCGAATCGAGCAACCTAGTGCCTTATAATAGTTGTTGtttt
aacaaagaaaattggtgtttttttagattttgttgCTAACTTGGAACTTG
TTCATACTATTTGAAATGTATATTATGGTGTTTGATTGTACAATAACTCA
ATAAATTGGATCTTATGTTCGCGTTGAAATAATGTTTTGGGTAAATAGTA
GTAGATTTTCAAACAATCTCTAGTGATAAACCTTGGAGATGGAAACACCA
TTTTGATTGATGGATGTCGCTGATTGGTTCggtagaaatttatttttaca
ttttagatGTATTAGGTGTTAGTCTTTACAACGAAACTGGTAGTTTGATA
GCAAACCTTTTTAAGATGAACCTAGGTTACTTACTGTAGGTTATTAATAT
TTCCAAATTGTGGAAGATTGAATAGATGCTTATTTGAAAATTATAATGTA
AATACATTACTTTTCTTAAGTAAAACTGAATATGTTATATGGCTGATTGC
GTCGATTGATT Run BLAST on NCBI transcript from alignment at scaffold_349:780414..788885+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060797 ID=TCONS_00060797|Name=TCONS_00060797|organism=Clytia hemisphaerica|type=transcript|length=8472bp|location=Sequence derived from alignment at scaffold_349:780414..788885+ (Clytia hemisphaerica)
CTGTTCGATCTCTGTCAACAGCAAGAACTGTAGCCTGCAAAGTCACCGAT
AAAGGTATGACATAAATGTGTTTTGAATAAAACACTAgtttaaaatacca
aaattaaaGATGTTGTAgtattacttttattttttatttttaaactacAG
TATATTATGTATTTAGTTTTAGCTAAACTTTACTCTCTTAAATAATCTGC
ATTGTCAATAACTTATTCTTCTTTTAGCATCTACACCAGTAGTTGAAGTC
GCTGCTGAAAACGCGAAATGTatgatttgttgtttttaacTGTTGTTACA
GCTCTTTAATCTGTTACTTTGGTTTTCCCATGTTTACCAGATTCCTCTGT
TCATTGGAGAAACTCGTCCAGCACTAGTTTTCGCTTTACAAGGTGTCACT
TACACCCCATAGCAGTTGACATCCATTGTATAGTAGTATGAGTAGAGGTG
GATTCGTATCACCAATGAACAGTGCTCTAAAAAAAGGAACAATATAATAA
TATCCATTGTATAGCGTAGTTAGCCTTTTTAAGATGCCCAATGCAGAGAA
GTGTCGTTCTGGAGGGAATTGATTGTTGGATTGGCTGCCACACATTGTTT
GGAGTGATTCTCGAGCTGTCTAAGGCTCTTAGGCCAAAGTAGGGTTCCTG
GTTTGAGATAACTGGATTATCCACTCAAAACATCGAAGATCAAACTGTTC
ACTTCATATGTTTATTCTCTTCTTTTAGCTACAACGCCTATAGTGGAGGC
TGTAGCAGAGGCAATTGCTGATCCCACGCCAGCGGAGTGTAAGATGTGTC
TTCTTTTCGACGCTTAGGTCGTCCCTCTGTTAGAATCAGAGAACAGACAC
ATCACGCACACACACCATTCATTTGTTTCTTCTATCTTGCTATATTAACT
CGGTAAGCTCTGGTTTCGACGGCAGAATTTCctccctgcctattctaatt
attagtagagtaggcagaaagttggtgtttaaaatctttgcttgaaaagg
attggtcattgcattgacgtcaaaaaaggacAACTTTTACCAACTTTAGT
TCACAACTGGAATAGGCAGGACAAAAGGTAGGCCGTCCAAACCAGAGCTA
ATTCATTACATTGTTTGTCACCAGTATCTTATCTATTCAGTATATTTCAT
GATATATCAAGTAACTACCATCGTAACCTCTACTAATTTATAGAAACCCA
ATAACAATCTACTTACACTTATAACATAGAAATAATAATTTAACCTTATA
TCAGCTTAGACAGCTTATCAATGATCACGTCAGGTGACTTTCCAACagat
aaatataatttttgatacgAACAACCATAATCTTTTCAATCATAGCTGTC
GCAATAGAATCGGAAGCAGTCGCCGAAGAAACCGTCGAAGCTGTCTCTGA
AGTTGCCGAAGCCGTTGAATGTATGCAAACCATTTAACAGTTTAGACGTT
TAGAAACTCTCTCTTAGTATGAGAAGTTTATAGCATACACGTACACCGTT
CGTCTGTATTTTCCGTATAAATTGCTCTTTCGTTATACTGTAGTACCATA
GTAATATCTTTAGATCTAGCTATCTTGTCTGCTTTACTTACCTGCTTTAT
CGTTGTCATCGCGTGGAATGTAGACGTTTAGAAATCTTCTCTTAGAACGA
GAAGAAGGGGTCCAACATACACACACAACATTTGTTATGAACTTGTATTA
AGTTCAACTCTAAAGTGTGTTTCAATATTCTTGTAGCAGTTGTCGAGGAA
GTTGCTGCCGAAACTGCAGTTGTTGAGGAAGCTGCTGCCGAAACTACAGT
TGTCGAGGAAGCTGCTGCTGAAACTGAAGCAGTCATTGAGGAGGCTGCTG
CCGAAACTGAAGCAGTCGTCGAGGAAGTTGCTGCTGAAACTGAAGCTGTT
GTCGAGGAGGTAGCTGCTGAAACTGAAGCCATCGTCGAAGAGGCTGCTGC
CGAGACTGAAGCAGTTGTTGAGGAAGTTGTTGCCGAAACTGAAGCCATCG
TCGAAGAGGCTGCTGCTGAAACTGAAGCAGTTGTCGAGGAAGTTGTTGCC
GAAACTGAAGCCATCATCGAGGAGGCTGCTGCTGAAACTGAAGCAGTCGT
CGAGGAAGTTGTTGCCGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTG
AATCTGAAGCAGTCGTCGAGGAAGTTGTTGCCGAAACTGAAGCCATCGTC
GAAGAGGTTGCTGTTGAAACTGAAGCTGTTGTCGAAGAGGCTGCTGCCGA
GACTGACGCAGTTGTTGAGGAAGTTGCTGCCAAAACTGAAGCCATCGCCG
AAGAGGTTGTTGCTGAAACTGAAGCAGTCGTTGAGGAGGCTGCTGCCGAG
ACTGAAGCAGTTGTTGAGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGA
AGAGGTTGTTGCTGAAACTGAAGCAGTCGTTGAGGAGGCTGCTGCCGAGA
CTGAAGCAGTTGTTGAGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGAA
GAGGTTGTTGCTGAAGCTGAAGCAGTCGTCGAGGAAGTTGTTGCTGAAAC
TGAAGCAGTCATCGAAGAGGCTGCTGCTGAAACTGAAACAGTTATTGAGG
AAGTTGCTGTCGAAGCTGAAGTAGTCGTCGAGGAGGTAGCTGCTGCTGCT
GCTGAAACTGAAGCTGTTGTTGAGGAGGCTGCCGCTGAAACTGAAGCAGT
CGTCGAGGAAGTCGCTGCTGAGACTGAAGCAGTTGTCGAGGAAGTCGCTG
CCGAAACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAAACTGAAGCTGTT
GTTGAGGAGGCTGCTGCTGAAACTGAAGCAGTCATCGAGGAAGTTGCCGC
TGAGACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAAACTGAAGCTGTTG
TTGAGGAGGCTGCTGCTGAAACTGAAGCAGTCATCGAGGAAGTTGCCGCT
GAGACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAAACTGAAGCAGTTGT
CAAGGAAGTCGCTGCCGAAACTGAAGCGGTTGTCGAGGAGGCTGCCGCTG
AAACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAAACTGAAGCTGTTGTC
GAAGAGGCTGCCGCTGAGACTGAAGCAGTCGTCGAAGAAGTTACTGCAGA
AACTGAAGCAGTCATCGAAGAGCCAGCTACTGAAACTGAAACAGTCGTCG
ATGAGGTAGCCCCTGAAGTAGAAGCAGTCGCTGAAGATGCAGCCCCTGAA
GTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCCGTCGATGA
GGAGGCAGCCCCTGAAGTAGAAGCCGTCGTTGAGGAGGCAGCTCCTGAAG
TAGAAGCAGTTGTTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAG
GAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGAGGCATCTGCTGGACC
AGAGAGTATGTTGTTAATGCTCTTAAATTTTTACGCCCTTAATAGTTgtc
tttggtttgattttcCCAGCAATCTCGAGTTCGTTATCCTCTGATCTTTA
ATAAAGTGCGTCTGAACTTTGCTTTTCTTTCTCTTCCCTTAGAAAAGGGC
AAATGAATTGAACTTTAGTAACTGCTGCTTTCTTTATCTCCTGCGATTTT
CTGAGTCCTTTTCCTAGCTCTACTTTTCCTATCCACTAATACTGAATACT
GATAATAATTTTCTGTAATTTATTTGTCCTTTTCTAGAACCAGAGCCGAA
AACTCTTTGGGAAAAGATTAAACGaatcttcaatttttaagtCGTCGGCA
AACTCAGTTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCGTTATAT
TTAACCTTAGATTAGATTTTCAACTTGGTTGGACATGAATAATTCTAACG
AGGGAAATCTGTATATTATTTCAACGGTTTCTTATATCAACTTGGCTACT
TCTTCTCTTGCAATTTTAAGGGTGTCAATATTGtctgttttttcttttca
aataacgTCATTCATCGTCAATTtacctttataaaccctggaccaagcta
tttCCACCatatttgatcggagtttttatgaaagtggtacccgcaaagaa
ttTATAGTTAAGATTTTGTTTGAcaacaaacggcgctacatcacttGCGT
GCAAgcgaaagtagatctagcgctctcgatgcgggtaccactttcaaaaa
tattccgaTCAAAATATGTTGGTTGGCCGGGACTGAGAAACTGCCTCCGG
GGTTTATGTAAAGCTCAATCAACTATGAATTATGAATCATTTCTAAGTTC
AACGTATTCTGATAATGTAATATCAAGTCTCAAATTGAATGCAATCCCTC
TGTATCTTTCAATGATCGGAGGGCTTCTTTGAGTCAGTAAcgccatagta
taagaaagccgcggctggaatgatgacgctattgtttttgtcgttAATGG
ATGTTTTATCTGTGTCTCCGTGATTTATAAGAACTAAATCTAAGCTAGCA
AAATCTTCAACCTGAAAAGTGTTTATAAAATTCAATTAAAGAATAATTAC
TTTTCAAGTCTTAGATTTTTCTCACTGCCCTCTAATTAGCTTGTTcgaag
tatattcttataaattccagataaaattttaaaaatttaggaCCAAATAA
CGCACATTTTAAtacaagaactaattttcaaatgttaaactttGAATGCT
TGCCGTCATCTCAATACTGTTGATTTTCGAATGAAGTTTTCAAGAATACT
GCTTgaatattgattttttaataTCAGTAAGAATTGTTCAAAATAATCAG
GAAGGCACTTCGAAGCACttaattttcttcaagttcttaaagcacTGACA
TTCTGTTCGCTCTAATATTTTAAACCGAAactcttttcttttactttgat
attatgaatgcgtgaattatcaagagatttgtgtttatgagcaaaattac
gTCTTACGAGGGACTTTGTTAAAAGTCAGATTAAATTGACAATGGAAATT
GTCATtgaaccataaaaaaattcgttcttacgacatagatagaacaacag
aaattcaactgaactcattccagccgcggctttcttatactatggtaacG
CTTTTCAGGTAATTAACGCTCATTACCATATCTAGGCTTTGCTTACTTTT
AGGTGTACACACTttcacgagcagaaactttcgcgaggtcgaaaaatcgt
aACATTNTAGTAACTGCTGCTTTCTTTATCTCCTGCGATTTTCTGAGTCC
TTTTCCTAGCTCTACTTTTCCTATCCACTAATACTGAATACTGATAATAA
TTTTCTGTAATTTATTTGTCCTTTTCTAGAACCAGAGCCGAAAACTCTTT
GGGAAAAGATTAAACGaatcttcaatttttaagtCGTCGGCAACCTCAGT
TGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTAACCTT
AGATTAGATTTTTAACTTGGACTTCAACAATTCGAACGGGGATATCTGTA
TATCGTTCCCATGATTTATATCAACTTGACTACTTCTTTTCTTGCAGTGT
TAAGGGTGTAAATATtgtctgtttttttcttttctaataacGTCATTCAT
CGTCAATTATGAATACagacctttataaaccctggaccaagctatttCCA
CCatatttgatcggagtttttatgaaagtggtacccgcaaGGAATTTATA
GTTGAGATTTTGCCTGACTACTTCACTAGTATGCAAtaaaaagtagatct
agcgctctcgatgcggGTACCACTCTCAAAAATATTccgatcaaaatatt
ttggttggcCGGGACTGAGAAACTGCCTCCGGGGTTTATGTAAAGCTCAA
TCAACTATGAATTATGAATCATTTCTAAGTTGAACATATTCTGAAAATTT
AATATCAAGTCTCAAATTGAATGCATTCCCCCTGTATCTTTCAATGATCG
GAGGGCTTCTTTGAGTCAGTAATGTTTTTCAGGTAATTAACACTCATTAC
CATATATAGGCTTTGCTTACttttaggtgtacaaactttcacgagcagaa
actttcgcgaggtcgaaaaatcgtaacatttactttcgcgaatttgacaa
aaaatttttcgtgagcataaactttcgcaaatgaGGCATATTTTTAGTAG
AAAATTCAAGTTTTCGGTGCATAAAACCAGTGTTTGACTTTCGCATAATA
TCTACACTAAATTTTATCCTTGTTATCATCAAGACGTTTACTTTCGCATA
AAgggctaaaattcgcgaaaatcgtgaaagtttctgctcgcgaaagtttg
tacgcctaaagtagttgCCTGTCAACAGTAATATTGTTAAAAGGTTTTTA
GGTCGCTAATGATAAAGAATATTGTGTGAGGTATTTCAAATGACCTGCAA
CTTATATAGCTCGCCTATAACACAAGACTAACTGTGCCGTAGTGTACTCT
TCAGACTTTTTCACTCAGGTTTATTTATCtcaataggccttttcataaat
tacgtcacgaacaacacttgcctcgtactcaaacaattaccattgtgatt
atgtcccttgagacattaaatgattcttttatgaatagaaagtagtttta
ataaaattcgCTGGGaattaatcaccatggcaataatttcaaaacgagac
aagtgatgttcataatttatgaaaaggtctatttaaaaagtatttctaat
CTTTCTActagttttgcctgaaaatggaaAGACGTGAAAAATTTTCAAGG
TATAACGAGATATTTGGCCTCTAGATATTTTCCAAAGTCCTGAGAGAATC
AACCGAAAACTTTTCAGGACTTAAAGTGCGGATAAGCACACTATAAAAAC
ATTTCTGATTAtacctttaatttttttaacgacTTTCCATTTCAAAGCAA
ATCTTAAGGTATTAAGGTATGTTTACACCTTTCTTAACACAATATTTTTA
ATTGGTCATATCTACGTCAAAAGTATTTTCTGACAAAAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGGGGGGTGTTAgaaatttctcgaaaaattaacaattcCGGGTGGGG
GGGgtcgtttatttggcacctaagagtaatctTGAAAAAGGGTTGGAATG
AAGAAAAGAAAGGCACAAAATAGTTGGCGCTAAAATTAAGAGCTGATAGT
AGTACGCGCTCATTATCATAACAACTACTTATCATTTTTCTTTGTCACTT
TTCTCAGGTAGCGTAGATGTAGGAGCCAAACAGCCATCGCCAGCAGCTGA
ACCATCCATTCCACAAGACCAAGCAGCATTCGACGTGTACAATGCAAATT
ACAAATGTCCGGAATATTACAAATACGATGAATTCGCGTTTTACGATATC
GAAAACGATATGCAATCGAGTCGAATCGAGCAACCTAGTGCCTTATAATA
GTTGTTGttttaacaaagaaaattggtgtttttttagattttgttgCTAA
CTTGGAACTTGTTCATACTATTTGAAATGTATATTATGGTGTTTGATTGT
ACAATAACTCAATAAATTGGATCTTATGTTCGCGTTGAAATAATGTTTTG
GGTAAATAGTAGTAGATTTTCAAACAATCTCTAGTGATAAACCTTGGAGA
TGGAAACACCATTTTGATTGATGGATGTCGCTGATTGGTTCggtagaaat
ttatttttacattttagatGTATTAGGTGTTAGTCTTTACAACGAAACTG
GTAGTTTGATAGCAAACCTTTTTAAGATGAACCTAGGTTACTTACTGTAG
GTTATTAATATTTCCAAATTGTGGAAGATTGAATAGATGCTTATTTGAAA
ATTATAATGTAAATACATTACTTTTCTTAAGTAAAACTGAATATGTTATA
TGGCTGATTGCGTCGATTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060797-exon-scaffold_349-1491911889:780414..780467 | TCONS_00060797-exon-scaffold_349-1491911889:780414..780467 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1510915933:780414..780467 | TCONS_00060797-exon-scaffold_349-1510915933:780414..780467 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1575043694:780414..780467 | TCONS_00060797-exon-scaffold_349-1575043694:780414..780467 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1491911889:780641..780682 | TCONS_00060797-exon-scaffold_349-1491911889:780641..780682 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1510915933:780641..780682 | TCONS_00060797-exon-scaffold_349-1510915933:780641..780682 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1575043694:780641..780682 | TCONS_00060797-exon-scaffold_349-1575043694:780641..780682 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1491911889:788221..788885 | TCONS_00060797-exon-scaffold_349-1491911889:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1510915933:788221..788885 | TCONS_00060797-exon-scaffold_349-1510915933:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060797-exon-scaffold_349-1575043694:788221..788885 | TCONS_00060797-exon-scaffold_349-1575043694:788221..788885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:780414..788885 + |
Blast
The following BLAST results are available for this feature:
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