TCONS_00060794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060794
Unique NameTCONS_00060794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060794 ID=TCONS_00060794|Name=TCONS_00060794|organism=Clytia hemisphaerica|type=transcript|length=352bp
gaaagaaaataaggCTCACATTACACGTGAAACATCCTGAATGCCAATTC
TTATTGAGTGCTTCTACATATTTTTCACCTCCAGTTATGGCCCGCATACA
CTTGCCACATTTGACAGAGAATAAatcttcaaaacatttttcacaATATG
GCTTCCCAGAATCCACAAGGTAGCCGTCAGTACCAAAACCACGGTTACAG
AAAGTGCAAACGAAATGGTCTGGATGCCAGCTCTTCCCCAACGCGTTTAT
ACAGTTCTGTATAAGATAATGAATAagatacaaaaatatttaatacaaAA
ACACTCGCAACAGGAtacaaagaacatttcaagaacatCGTTAGGCTTAA
AT
Run BLAST on NCBI

transcript from alignment at scaffold_349:642206..642911+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060794 ID=TCONS_00060794|Name=TCONS_00060794|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at scaffold_349:642206..642911+ (Clytia hemisphaerica)
gaaagaaaataaggCTCACATTACACGTGAAACATCCTGAATGCCAATTC
TTATTGAGTGCTTCTACATATTTTTCACCTCCAGTTATGGCCCGCATACA
CTTGCCACATTTGACAGAGAATAAatcttcaaaacatttttcacaATATG
GCTTCCCAGAATCCACAAGGTAGCCGTCAGTACCAAAACCACGGTTACAG
AAAGTGCAAACGAAATGGTCTGGATGCCAGCTCTTCCCCAACGCGTTTAT
ACAGTTCTGTATAAGATAATGAATAagatacaaaaatatttaatacaaAA
ACACTCGCAACAGGAtacaaagaacattttaaaaacattttaagaacatt
ttaagaacatctgaaggcttttatacaatttttgatgttcttagcATGGT
CCGGATGATGCCAGCTCTTACCAAACGCGTTTATACAGTTCTAGAAAATG
AATCAGATACGTGATTTGTAATACAAaaatacagttgatgctctctaatt
cgacgtttttctattcgataggctcccttatttgataatattaaaagtca
ctgtcaacaagaaactctcataaacgacgctcccttattagATAAGCGCC
CCTATTTgaagaaaatccaattccccttgaaaattgaattagagagcgtc
aactgtattcggAACCGGgtgaaaagaacatttcaagaacatCGTTAGGC
TTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038193XLOC_038193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060794-exon-scaffold_349-1491911889:642206..642530TCONS_00060794-exon-scaffold_349-1491911889:642206..642530Clytia hemisphaericaexon
TCONS_00060794-exon-scaffold_349-1510915933:642206..642530TCONS_00060794-exon-scaffold_349-1510915933:642206..642530Clytia hemisphaericaexon
TCONS_00060794-exon-scaffold_349-1575043694:642206..642530TCONS_00060794-exon-scaffold_349-1575043694:642206..642530Clytia hemisphaericaexon
TCONS_00060794-exon-scaffold_349-1491911889:642885..642911TCONS_00060794-exon-scaffold_349-1491911889:642885..642911Clytia hemisphaericaexon
TCONS_00060794-exon-scaffold_349-1510915933:642885..642911TCONS_00060794-exon-scaffold_349-1510915933:642885..642911Clytia hemisphaericaexon
TCONS_00060794-exon-scaffold_349-1575043694:642885..642911TCONS_00060794-exon-scaffold_349-1575043694:642885..642911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:642206..642911 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.606547	0.855822	3.17059	0.759505	23.2379	18.7276	49.1043	62.5258	31.7588	42.205	13.3781	18.6336	47.293	53.0711	29.5348	30.096	28.877	31.872	54.4549	44.428	21.0434	19.3192	9.77333	14.3576	21.1163	16.0532	31.8908	42.6675	45.2703	62.4625
Blast
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BLAST of TCONS_00060794 vs. Swiss-Prot (Human)
Match: LDB3 (LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.968e-19
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = -1 
Query:   17 INALGKSWHPDHFVCTFCNRGFGTDGYLVDSGKPYCEKCFEDLFSVKCGKCMRAITGGEKYVEALNKNWHSGCFTCNV 250
            ++AL ++WH   FVC  C + FG   + ++ G+PYCEK + +LFS KC  C   +  G+K++EAL   WH  CF C V
Sbjct:  622 MHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAV 699

HSP 2 Score: 75.0998 bits (183), Expect = 2.473e-16
Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = -1 
Query:   23 ALGKSWHPDHFVCTFCNRGFGTDGYLVDSGKPYCEKCFEDLFSVKCGKCMRAITGGEKYVEALNKNWHSGCFTC 244
            A+G+SWHP+ F C +C        ++ +    YCE+C+E  F+  C KC   I G  + + AL + WH+ CF C
Sbjct:  565 AMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIMG--EVMHALRQTWHTTCFVC 636
The following BLAST results are available for this feature:
BLAST of TCONS_00060794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDB31.968e-1942.31LIM domain-binding protein 3 OS=Homo sapiens GN=LD... [more]
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