|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060793 ID=TCONS_00060793|Name=TCONS_00060793|organism=Clytia hemisphaerica|type=transcript|length=1598bp
GTTTTAAACAAGAGATATTTGCTTTAAAACCCATGTCGATTGATCCAACG
AATTGCAGTACACAAAAATCACTCTACCagcaaatcaaaaaaagtcCACA
AAAAGTATTGAAcgaacaaaaaagaaagttcaATTTGGGCAATGGGCAGT
TTTTCAACGATCCAATCAAAGCCGCTGATCAGCTTCTTGAACGTGAGTAC
GCTGATTCAGCACTTTTCGACTCTACCCTCCACAAAGCCATTTTTATTCC
ACCTCTGTTCGAATCTGCCCAATATGCGAAAACGAATTCATCGGTGCACA
TGCTCGATTACggagacgtcaaaaaatcttcaatACAGAAATCATTGGAT
AATTTAAAGTTAAACAACCCTAACCATTGGTTTACCAAGGAGCTGCAATC
TTTCCATGATCTCCAACAATCCACTTCTAGCGACGAAATCAACGCCACAG
AATTCTCTTATTGGATTCGCAATATCAAACTCAAGCATTTACTGATCGAA
GAGTTGGGAACGGACCAAGTGCATCTTCCCGCATCAACATCTGACAACCA
AACCTTCAAAGAAGCTATCCAAAAGCTGACAACGATTCAAGGATCTCCAC
TCGATGAAGCTCTAAAGGTAAGGAACTGTAAGAAAGCCATCGAAAAGCTG
GTCAAACAAAATCCACCAAATGATTCGATCATGAGATGGTATTTCGGATT
TCAACCTGCTGAAGTCGGTGAAAAAGCAGAACGTTCCGTTTTTGAACAAC
TTGATTCCCTCAAAGATGACGAAGTGCTCCACGACACAGCTATTCTGAAT
TCTCTTGACTTTCGTACTAATGTGAACAACCGCATGCAACAAGAATTTGA
CGTCCTTCTTTTCTCTTGGTCCAGAAAATTGATCATCGGTATCGAGATTA
AACGGACACTCACCTCGACAAGAGCTNTTTCTCTTGGTCCAGAAAATTGA
TCATCGGTATCGAAATTAAACGGACACTCGCATCGACAAGAGCGTTTGAA
CAACTCGACAGATATCACGAGTTGATTGAAGAAAGGTTGAGTGATCAACT
CGGATCAGGTTGGACCTTTTATCCAGCTGTTTGCGTTGAGAACGATGCTG
AACTTTCTGGAACTCATCATTTCATCAATCTGGACACTGATTTAAAAGGC
TGGCTTGCAAACATCTTCACAAAATACCCTATTGTACCAACCTTCATCCC
CTATATCCCCCCAATCAACCAACTTAAGGATGTTTTACGAATCGTCATTT
TCGCTCTACACTCTTCAAAGACAGCACCCATCACAACAACAAATTGGGTG
GATTACATCACCGAAGCCATTGATACCGTATGTACAACCGACAACATTTT
ATTCTACAGTAAGAAACAACTTCCCATCATGCGAGCAAACGATTCTCGTT
TCAATAAAGTGCTGCTCTATGGTGGCTGGGGCTGTGGCAAGTCTTTCTTG
CTGCAGCAAAAAGCCAAACAGTTGAGTGGTATGAAAGAATACAAAGACAA
GATAATGTACGTAGTAACAACAAATGTCTGGGGAAAGTGGGCAACTTTAA
CTTTATTAACATGGAGATTGAAGAAAGAATTAGGAGAGCAATACGGAG Run BLAST on NCBI transcript from alignment at scaffold_349:557142..558873+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060793 ID=TCONS_00060793|Name=TCONS_00060793|organism=Clytia hemisphaerica|type=transcript|length=1732bp|location=Sequence derived from alignment at scaffold_349:557142..558873+ (Clytia hemisphaerica)
GTTTTAAACAAGAGATATTTGCTTTAAAACCCATGTCGATTGATCCAACG
AATTGCAGTACACAAAAATCACTCTACCagcaaatcaaaaaaagtcCACA
AAAAGTATTGAAcgaacaaaaaagaaagttcaATTTGGGCAATGGGCAGT
TTTTCAACGATCCAATCAAAGCCGCTGATCAGCTTCTTGAACGTGAGTAC
GCTGATTCAGCACTTTTCGACTCTACCCTCCACAAAGCCATTTTTATTCC
ACCTCTGTTCGAATCTGCCCAATATGCGAAAACGAATTCATCGGTGCACA
TGCTCGATTACggagacgtcaaaaaatcttcaatACAGAAATCATTGGAT
AATTTAAAGTTAAACAACCCTAACCATTGGTTTACCAAGGAGCTGCAATC
TTTCCATGATCTCCAACAATCCACTTCTAGCGACGAAATCAACGCCACAG
AATTCTCTTATTGGATTCGCAATATCAAACTCAAGCATTTACTGATCGAA
GAGTTGGGAACGGACCAAGTGCATCTTCCCGCATCAACATCTGACAACCA
AACCTTCAAAGAAGCTATCCAAAAGCTGACAACGATTCAAGGATCTCCAC
TCGATGAAGCTCTAAAGGTATTTTACTCATCTGTATGACAAAAACttgaa
ctttaaaaatttatcCCATATTATACTCTGTACCTTCCGATCTCATTGGT
GCTATATACAAATAATAcatgtatttttttgtaattctttcgATTTTTCA
GGTAAGGAACTGTAAGAAAGCCATCGAAAAGCTGGTCAAACAAAATCCAC
CAAATGATTCGATCATGAGATGGTATTTCGGATTTCAACCTGCTGAAGTC
GGTGAAAAAGCAGAACGTTCCGTTTTTGAACAACTTGATTCCCTCAAAGA
TGACGAAGTGCTCCACGACACAGCTATTCTGAATTCTCTTGACTTTCGTA
CTAATGTGAACAACCGCATGCAACAAGAATTTGACGTCCTTCTTTTCTCT
TGGTCCAGAAAATTGATCATCGGTATCGAGATTAAACGGACACTCACCTC
GACAAGAGCTNTTTCTCTTGGTCCAGAAAATTGATCATCGGTATCGAAAT
TAAACGGACACTCGCATCGACAAGAGCGTTTGAACAACTCGACAGATATC
ACGAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGACC
TTTTATCCAGCTGTTTGCGTTGAGAACGATGCTGAACTTTCTGGAACTCA
TCATTTCATCAATCTGGACACTGATTTAAAAGGCTGGCTTGCAAACATCT
TCACAAAATACCCTATTGTACCAACCTTCATCCCCTATATCCCCCCAATC
AACCAACTTAAGGATGTTTTACGAATCGTCATTTTCGCTCTACACTCTTC
AAAGACAGCACCCATCACAACAACAAATTGGGTGGATTACATCACCGAAG
CCATTGATACCGTATGTACAACCGACAACATTTTATTCTACAGTAAGAAA
CAACTTCCCATCATGCGAGCAAACGATTCTCGTTTCAATAAAGTGCTGCT
CTATGGTGGCTGGGGCTGTGGCAAGTCTTTCTTGCTGCAGCAAAAAGCCA
AACAGTTGAGTGGTATGAAAGAATACAAAGACAAGATAATGTACGTAGTA
ACAACAAATGTCTGGGGAAAGTGGGCAACTTTAACTTTATTAACATGGAG
ATTGAAGAAAGAATTAGGAGAGCAATACGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060793-exon-scaffold_349-1491911889:557142..557758 | TCONS_00060793-exon-scaffold_349-1491911889:557142..557758 | Clytia hemisphaerica | exon |
| TCONS_00060793-exon-scaffold_349-1510915933:557142..557758 | TCONS_00060793-exon-scaffold_349-1510915933:557142..557758 | Clytia hemisphaerica | exon |
| TCONS_00060793-exon-scaffold_349-1575043694:557142..557758 | TCONS_00060793-exon-scaffold_349-1575043694:557142..557758 | Clytia hemisphaerica | exon |
| TCONS_00060793-exon-scaffold_349-1491911889:557893..558873 | TCONS_00060793-exon-scaffold_349-1491911889:557893..558873 | Clytia hemisphaerica | exon |
| TCONS_00060793-exon-scaffold_349-1510915933:557893..558873 | TCONS_00060793-exon-scaffold_349-1510915933:557893..558873 | Clytia hemisphaerica | exon |
| TCONS_00060793-exon-scaffold_349-1575043694:557893..558873 | TCONS_00060793-exon-scaffold_349-1575043694:557893..558873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:557142..558873 + |
Blast
The following BLAST results are available for this feature:
|
