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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060783 ID=TCONS_00060783|Name=TCONS_00060783|organism=Clytia hemisphaerica|type=transcript|length=2348bp
CCTTTTGGACACCGAAATACACAACCTTCTCCTCCAGCTaaggttgaaaa
tatttctgctAGATTCCCAAGATTGATTTCATTTCCATTAACAGTAAAGT
AAGATGAAATTATTGTTAAAAAGATTGAGATAAAAAACACCACAGtccaa
gaaaaatttttgacggccatatttgttttgattccaACAAACTAGGTACA
AAGTACTTCATACTCACTTATCGACAAGGCTTAGCTTGAAAGCGACTCTA
CTTTCACCTACACATAGGTtcacaaaatgtaaacaaacccaCGTTGACCG
TCTTTTCATCCAAAACTCTTCCGTACCTTACAATCGTTTTAATACTGAAA
AGGTTAGGCTGATAGGATTACACCACGATTACATTTTTCCCAATGACCGG
ATTGGCATAAAATTACATCAGCTTTTCGTGAGAGCACGAGGTTGTAAATA
TTCTTGTCCAAAGAATATAATCCTACTTAGATCAACTGAAGGAGAAGATG
GCATCTAAGCTTTGTTGAAAAAGTGAACGACAATATGGACGGATAATGAA
AGATAAAAAAGATTCCTTAGGGAATATCAAACCATATCGTTTCGACAGTA
ATGGGTGATGGAGAATCTCTATTAGAAACTATGAAATTGTAGGTGAATTG
TGAATAAATTGAAAACGAGATAACAATAAAATGgagagtttgaatttgtt
tattttgcaacAGGTCATCAAAAAACGTTCCTCGCATGAAGAGGGTACAA
TTCAAGACCTAAAAAAGCAAAAGTTTCATTTCCAAAAACTTGTTCAAAGC
ATTGATTCTTTGTCTGATGGACAGGCTACATTATCATACAATGATGAtaa
ttttcgtgaattttctgTCCATATTTCACCAAATGATGGACCGTATAAAG
GAGGCAAGGTTGGGTTTAACTTCAAAATGAAGCCTTCGTACCCAAGCACA
CCACCTCAGATCACATGTCAAAACATTATTTACCATCCGAACATTGATGA
TGAAGGTGACATCTGCTTAAGTGTACTGAATGAATGGTCTAGCCAAAACA
ACGATTTGGTGGATTGTATCCAGGGACTTTTGTATCTGTTACATTATCCT
AATTTGGAGGATCCGCTGTCTCCCTTTTTTGCCCCTGGTGAAGACGAAAA
TGAGTTCCAAGAGAACGTAAAATTAACAATGGCTGGAAGTGTTTTTAATG
GAGTtatttttgattgtttgttaTCACAATAAAACTTTTCGAATCATTCT
TACTAAATATAGATCCTGTTTTAAACATTTGACCTTTCGCTAGACGTCTT
TTAAAACTAATCAAAATACCTggatttttttgcaattttcagtTTAGTTT
CAGTCTGTTTAGTTTCATTTGTGTCCTAACTATCCATTTTTTGAAACTCC
CAGAGAGGTATCTTGCTGTATAGCAAATCTTTGTGTAAATTGtaaataac
atattttttttaaaacaatttgaaatatcagatatttttgtcgattttgt
GTTTTATAGTTTTCTGGTGATCTGAATTTTTAGATTGACTATAAGTacta
ttttttaagaaaatcaaataatataaaatttaaCAGACAATTATTTTAAG
GCTATGGTCTCAtctcatacacgctttttttataagtgCTTATGGTGtgc
tttggatgagggtcaagtattcttaggaaaatgcgaaaattgagggtgaa
atattcttaNTGTCAAAACATTATTTACCATCCGAACATTGATGATGAAG
GTGACATCTGCTTAAGTGTACTGAATGAATGGTCTAGCCAAAACAACGAT
TTGGTGGATTGTATCCAGGGACTTTTGTATCTGTTACATTATCCTAATTT
GGAGGATCCGCTGTCTCCTTATTTTGCCCCTGGCGAAGACGAAAATGAGT
TCCAAGAGAATGTAAAATTAACAATGGCTGGAAGTGTTTTTAATGGAGTT
CTTTTTGATTGTTTGTTATCACAATAAAACTTTTCGAATCATTCTTACTA
AATATAGATCCTGttttattttaaacatttgACCTTTCGCTAGACGTCTT
TTAAAACTAATCAAAATACCTGGATTCTTTTGCAATTTTCAGTTTAGTTT
CAGTCTGTAGTTTCATTTGTGTCCTAACTATCCATTTTTTGAAACTCCCT
CAGAGGTATCTTGCTGTATGTATAGCAACTCTTTGTGTAAATTgtaaata
acatttttttttaaaacaatttgaaatatcagatatttttgtcgattttg
tGTTCTATAGTTTTCTGGTGATCTGAATTTTTAGATTGACTATAAGTACT
ATTTTTTAAGaattaaagaaaatcaaataatATGAAATTTAACAGACA Run BLAST on NCBI transcript from alignment at scaffold_349:419983..426775+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060783 ID=TCONS_00060783|Name=TCONS_00060783|organism=Clytia hemisphaerica|type=transcript|length=6793bp|location=Sequence derived from alignment at scaffold_349:419983..426775+ (Clytia hemisphaerica)
CCTTTTGGACACCGAAATACACAACCTTCTCCTCCAGCTaaggttgaaaa
tatttctgctAGATTCCCAAGATTGATTTCATTTCCATTAACAGTAAAGT
AAGATGAAATTATTGTTAAAAAGATTGAGATAAAAAACACCACAGtccaa
gaaaaatttttgacggccatatttgttttgattccaACAAACTAGGTACA
AAGTACTTCATACTCACTTATCGACAAGGCTTAGCTTGAAAGCGACTCTA
CTTTCACCTACACATAGGTtcacaaaatgtaaacaaacccaCGTTGACCG
TCTTTTCATCCAAAACTCTTCCGTACCTTACAATCGTTTTAATACTGAAA
AGGTTAGGCTGATAGGATTACACCACGATTACATTTTTCCCAATGACCGG
ATTGGCATAAAATTACATCAGCTTTTCGTGAGAGCACGAGGTTGTAAATA
TTCTTGTCCAAAGAATATAATCCTACTTAGATCAACTGAAGGAGAAGATG
GCATCTAAGGtaagaattttttgatttctagCATGTAGTTCCcctgtttt
tgtttaaaacgttaacaaatgttatttgatttaatgggttcaatgtatca
aatttctcagtttagttgacactttggtatctttgttgcgtcacagcgaa
aggattgtttttagtttagtttgtatctttgaaagatccCATCAGAATTA
GGCAGGGTtgttggatttaggaccactcacggaaTTGAGTAAATTTGCGA
AAtatatccagacgatctcaatcgaacggaatcgacgatcgagacagtcg
aaccaaatctaacgcaatcgaccgattgaaattcgattgtcagtcgggtg
tttaagataaaaactgcaattattgctcttttcggaaattattgccgaaa
acggcaattttttaaacgatgaaatgctgaatcagcaaaatgtgttgtcc
ttttaagggcaaagatgtcagaggtgtttgaaaattgtaaaattgcatcg
agaaaaaggtttttcgggtttttaaaagtgattttttcaatttttcgttg
ctcaataacttgaaaagttctaaaataatatgttaaaagatcctgcatcg
atgccgaaacacagccagaaagaaataacaaaacccccgttgtaaatttg
tttacatatgactcgattttgctatctgcatttctaacaaaaaccagttg
aaaacaaaactaaacgaggcacagtgggcctacttatcgcgagggtgtca
aataccactaGGGATTTATGTTAGGAACAGATCATGCTGATTACCCTCTT
ATAATGTGCCATAGgttataaaaacttgaaaaaacatcaatttttagggT
AGGAACCATTTTTGGTTTCCCTACCCGGGTATTTAGGGTCCACCAACTGC
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcttttctgctgattcagcatttcatcgttgaaaaaattgccgttttcg
gcaataatttccgtaaagagcaataattgcagtttttatcttaaacaccc
gactgattgtcgaacgcaatcgaatctcaatcgaatattaccgcaatttt
cagattcgattgatgttcgattgtgtcgattgcgtttgatcgtcgattca
ttgacccccgcatttttcatcgcataatttctacgggaaatcgaaagtaa
tttcattcggcttgcgttcgatttggtttgactggttctATCGtcgattg
ggccattccagaaaaattttgttaccccccgtcggacgacgtgcattttt
taattttttctagcctcggaaataatttttcttttccagtgcgcagtggt
ggtcggaaattccaataaaaatccatgtacttttgcaaaatgcatcggaa
attccactcttttttgccttttttaattcaattgccttggaaattcacac
attttcttctctcgccttggaaatttcgaagtttggtgaaaacttttgcc
cttggaaatcctgtgtcgtccgcccccctgttacaaacaaattctggaat
ggcccattccgttcgattgagatcgtcttgGATATAATAATTCTGGGAAA
TCCTGTTAATTTTTAACTTCAGAGGACATTAGGggacccgtccatattca
tttgacaacgcataaTGTCAAATTGCCGTTATCTTCTGAACACCCCCTAC
CCCCCACAGATAACGTCAAGCAATTTATACCAAAAGTTGTCgccattttt
tcatcaaagttttcctgtTACAAAGTCCGTACTTGGTTGTACCCGTGTgt
gtatgtgttcttttaactaatgacctttatttaaaaagaaattaaaagct
ccacttAGCGCTAGGTCCGTGCCATGCTTTAGGCATACCACCTTCTTTGC
CCATTTGTGCGATGTGGTTCACTTGATTGCACAAACAATAAAAATATGAT
AATGATATCATAGCGCGAACCAATGGGATTATATATGCGAGCAAATTTTC
ATGCAATTCATgcacaaatatattttcaacagTTAGAAAAGTTTAGTGTG
GTTGGTGGTAACAAATATttgcgattttcacaaaaaaatataccttgaaa
cctaacttttgaaaccCCCCCCATcccctcataacgtcaatttgatgatt
tgcgttgtcaaatgaatatggacagGTTGCCATACAATTTCAGTCAAGGA
AATAGCATAGAACTAGAGTGCTGCGAAATACATCTTTACAATATTTCGCA
GCAATACAGTTGCGCCCACACATTTTGTTGCTCTCCACTGTTGCACTGTT
TGGTCTCTGTGAGGTAAACAAACCTGTTTTTTCTGCATTTCCTTAGGGAG
AATTggttgagcttttcttaagtttttAAGAACAGAATCCCTctcaattt
ttatattttctttctatttatGATATTATTACCACTGTGTAAAAACTCCT
CGCAGTCAAAAATGCATTTTCCTGGCCCATTTCCAAGAAGAtaaaattac
aagaaaaatccCTTTGACAACACTTGCCTTTGAACAGAAAACAGGGTTGA
AGGGTGACACAAAAGCCTTCagaccatttttcatgcccttttagcgtccg
gtcatcggacgctgcccccccccctgaaatctctgaaattttggtaaaaa
cagcctttttagcagaaaaacacaagaaagagtgccctttttggccacca
acggacgctgccctgcctttctaaaatatggcctggcCTTCACAAAATCA
TGTGcattttagggaaaattttcTCACTAGGattttaatttcctacctaG
GGATTTTTTGCTTAATCATTCTTGACAGTAAGGCTGAATATCATCGCCTA
CTGGAATGTACAGGTCTTTCATTTCACAGAATCAACTAAAATTAACACTT
ATCCAAATCGTGCTGGTCGAGGCAACTTTTTGTGGTCACAATTGACACTT
GCTGCTAGTGGTGTGTTGTGGTTATAGATCTAATATACCTTTCCCCGTAT
AAATTCAAACTTCCCGGAAAAATATGCGCTTCACCATTGTGCTCAAAATT
ATTTGGGAGGTAAACAGCACATTTTTGCCAGGGTTGTTTACCTCCAGAAA
ACCAACCTTCCCTAGagaaacgcaggcaaaaacagggttgtttacctcca
gagaaaaaaatgttgggAGTATCAAAATAATGTGTGTGCATCTGTCTTGA
TGAAGTGTGATTCAAAGCTATGAGATTAAATATTCTGTTATCTTATAATT
TCAGCTTTGTTGAAAAAGTGAACGACAATATGGACGGATAATGAAAGATA
AAAAAGATTCCTTAGGGAATATCAAACCATATCGTTTCGACAGTAATGGG
TGATGGAGAATCTCTATTAGAAACTATGAAATTGTAGGTGAATTGTGAAT
AAATTGAAAACGAGATAACAATAAAATGgagagtttgaatttgtttattt
tgcaacAGGTCATCAAAAAACGTTCCTCGCATGAAGAGGGTACAATTCAA
GACCTAAAAAAGCAAAAGTTTCATTTCCAAAAACTTGTTCAAAGCATTGA
TTCTTTGTCTGATGGACAGGCTACATTATCATACAATGATGAtaattttc
gtgaattttctgTCCATATTTCACCAAATGATGGACCGTATAAAGGAGGC
AAGGTTGGGTTTAACTTCAAAATGAAGCCTTCGTACCCAAGCACACCACC
TCAGATCACATGTCAAAACATTATTTACCATCCGAACATTGATGATGAAG
GTGACATCTGCTTAAGTGTACTGAATGAATGGTCTAGCCAAAACAACGAT
TTGGTGGATTGTATCCAGGGACTTTTGTATCTGTTACATTATCCTAATTT
GGAGGATCCGCTGTCTCCCTTTTTTGCCCCTGGTGAAGACGAAAATGAGT
TCCAAGAGAACGTAAAATTAACAATGGCTGGAAGTGTTTTTAATGGAGTt
atttttgattgtttgttaTCACAATAAAACTTTTCGAATCATTCTTACTA
AATATAGATCCTGTTTTAAACATTTGACCTTTCGCTAGACGTCTTTTAAA
ACTAATCAAAATACCTggatttttttgcaattttcagtTTAGTTTCAGTC
TGTTTAGTTTCATTTGTGTCCTAACTATCCATTTTTTGAAACTCCCAGAG
AGGTATCTTGCTGTATAGCAAATCTTTGTGTAAATTGtaaataacatatt
ttttttaaaacaatttgaaatatcagatatttttgtcgattttgtGTTTT
ATAGTTTTCTGGTGATCTGAATTTTTAGATTGACTATAAGTactattttt
taagaaaatcaaataatataaaatttaaCAGACAATTATTTTAAGGCTAT
GGTCTCAtctcatacacgctttttttataagtgCTTATGGTGtgctttgg
atgagggtcaagtattcttaggaaaatgcgaaaattgagggtgaaatatt
cttaNTGTCAAAACATTATTTACCATCCGAACATTGATGATGAAGGTGAC
ATCTGCTTAAGTGTACTGAATGAATGGTCTAGCCAAAACAACGATTTGGT
GGATTGTATCCAGGGACTTTTGTATCTGTTACATTATCCTAATTTGGAGG
ATCCGCTGTCTCCTTATTTTGCCCCTGGCGAAGACGAAAATGAGTTCCAA
GAGAATGTAAAATTAACAATGGCTGGAAGTGTTTTTAATGGAGTTCTTTT
TGATTGTTTGTTATCACAATAAAACTTTTCGAATCATTCTTACTAAATAT
AGATCCTGttttattttaaacatttgACCTTTCGCTAGACGTCTTTTAAA
ACTAATCAAAATACCTGGATTCTTTTGCAATTTTCAGTTTAGTTTCAGTC
TGTAGTTTCATTTGTGTCCTAACTATCCATTTTTTGAAACTCCCTCAGAG
GTATCTTGCTGTATGTATAGCAACTCTTTGTGTAAATTgtaaataacatt
tttttttaaaacaatttgaaatatcagatatttttgtcgattttgtGTTC
TATAGTTTTCTGGTGATCTGAATTTTTAGATTGACTATAAGTACTATTTT
TTAAGaattaaagaaaatcaaataatATGAAATTTAACAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060783-exon-scaffold_349-1491911889:419983..420491 | TCONS_00060783-exon-scaffold_349-1491911889:419983..420491 | Clytia hemisphaerica | exon |
| TCONS_00060783-exon-scaffold_349-1510915933:419983..420491 | TCONS_00060783-exon-scaffold_349-1510915933:419983..420491 | Clytia hemisphaerica | exon |
| TCONS_00060783-exon-scaffold_349-1575043694:419983..420491 | TCONS_00060783-exon-scaffold_349-1575043694:419983..420491 | Clytia hemisphaerica | exon |
| TCONS_00060783-exon-scaffold_349-1491911889:424937..426775 | TCONS_00060783-exon-scaffold_349-1491911889:424937..426775 | Clytia hemisphaerica | exon |
| TCONS_00060783-exon-scaffold_349-1510915933:424937..426775 | TCONS_00060783-exon-scaffold_349-1510915933:424937..426775 | Clytia hemisphaerica | exon |
| TCONS_00060783-exon-scaffold_349-1575043694:424937..426775 | TCONS_00060783-exon-scaffold_349-1575043694:424937..426775 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:419983..426775 + |
Blast
BLAST of TCONS_00060783 vs. Swiss-Prot (Human)
Match: UBC12 (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 7.217e-22 Identity = 64/182 (35.16%), Postives = 97/182 (53.30%), Query Frame = 3
Query: 690 LNLFILQQVIKKRSSHEEGTIQDLKKQKFHFQKLVQSIDSLSDGQAT-LSYND-DNFREFSVHISPNDGPYKGGKVGFNFKMKPSYPSTPPQITCQNIIYHPNIDDEGDICLSVLNEWSSQNNDLVDCIQGLLYLLHYPNLEDPLSPFFAPGEDENE--FQENVKLTMAGSVFNGVIFD-CL 1220
+ LF L+Q KK GT KK ++ + I+ L+ + +S++D D+ F + I P++G YK GK F+FK+ YP PP++ C+ ++YHPNID EG++CL++L E + I GL YL PN EDPL+ A N F++NV+ +M G F+ CL
Sbjct: 2 IKLFSLKQQ-KKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182
The following BLAST results are available for this feature:
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