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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060776 ID=TCONS_00060776|Name=TCONS_00060776|organism=Clytia hemisphaerica|type=transcript|length=2136bpRun BLAST on NCBI protein sequence of TCONS_00060776-protein >TCONS_00060776-protein ID=TCONS_00060776-protein|Name=TCONS_00060776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp MPTFSWTNLILVLFFGYLFNSIYVIYTLFNPDECDIKKSGRRCLEPSYKLRun BLAST on NCBI transcript from alignment at scaffold_349:229690..264684+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060776 ID=TCONS_00060776|Name=TCONS_00060776|organism=Clytia hemisphaerica|type=transcript|length=34995bp|location=Sequence derived from alignment at scaffold_349:229690..264684+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_349:229690..264684+ >TCONS_00060776 ID=TCONS_00060776|Name=TCONS_00060776|organism=Clytia hemisphaerica|type=CDS|length=26112bp|location=Sequence derived from alignment at scaffold_349:229690..264684+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060776 vs. Swiss-Prot (Human)
Match: CLP1L (Cleft lip and palate transmembrane protein 1-like protein OS=Homo sapiens GN=CLPTM1L PE=1 SV=1) HSP 1 Score: 490.73 bits (1262), Expect = 2.357e-165 Identity = 271/539 (50.28%), Postives = 381/539 (70.69%), Query Frame = 3
Query: 192 SWTNLILVLFFGYLFNSIYVIYTLFNPDECDIKKSGRRCLEPSYKLKDLDDLKVTVFVS-RSNVPKQSDLKLIWDSSDGGIKSSTEKKLNVSIPFSTRRNGSLYAYVFLHPSSMSPFDADTSQINYRRHPLTKYAIPKDKTFNLIQGTKEQKAVK-----------PITHMHTKLAFYLAIQNKTFDRNAIPPDLYHVINLNGNGK---YLPLLHVDGLTTLERHMVPITKNTSEVEIQLYFTPVSLGRMRIWTAVESTLGNFKSLGFTDKDIDEVKGIFTDTNLYFLGLTFFVALIHMLFDVLAFKNDVSFWKKKESMAGMSTRTVIWRCVSTSIIFLYLMDEKTSLLVLVPAGIGAIIEVWKVTKALKIKITFDSWKPSIQFGXXXXXXXXXXXFDEQAMKXXXXXXXXXXXXXXXXXXXXQPHKSWYSWVVRSLVNGVYAFGFLFMLPQLFVNYKLKSVAHLPWRAFMYKAFNTFIDDVFAFIITMPTAHRLACFRDDVVFLVYLYQRWLYPVDKTRTSEYGMSFEEENSKKSDSN 1763
S+T+L++ +F Y+ ++ +V+Y + C C++P L L+++V+ + RS++ ++++ L+ + D ++S E+ +NVS+P TR NG+LYAY+FLH + + P+ D Q++ PLT Y +PK + NL+ G + + ++ P++H +LA + N FD +++P D++ + + GK YLP+L +D L+ + ++ I ++T+E+ + + + VSLGR+R W ++ + + + GF++KD DEVKGIF DTNLYFL LTFFVA H+LFD LAFKND+SFWKKK+SM GMST+ V+WRC ST +IFL+L+DE+TSLLVLVPAG+GA IE+WKV KALK+ I + P QFG S+SE++TEE+D QAMKYLSY LYPL + +VYSL+ +KSWYSW++ S VNGVYAFGFLFMLPQLFVNYKLKSVAHLPW+AF YKAFNTFIDDVFAFIITMPT+HRLACFRDDVVFLVYLYQRWLYPVDK R +E+G S+EE+ ++ ++
Sbjct: 7 SFTSLVVGVFVVYVVHTCWVMYGIVYTRPCS---GDANCIQPY--LARRPKLQLSVYTTTRSHLGAENNIDLVLNVEDFDVESKFERTVNVSVPKKTRNNGTLYAYIFLHHAGVLPWH-DGKQVHLVS-PLTTYMVPKPEEINLLTGESDTQQIEAEKKPTSALDEPVSHWRPRLALNVMADNFVFDGSSLPADVHRYMKMIQLGKTVHYLPILFIDQLSNRVKDLMVINRSTTELPLTVSYDKVSLGRLRFWIHMQDAVYSLQQFGFSEKDADEVKGIFVDTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLVPAGVGAAIELWKVKKALKMTIFWRGLMPEFQFGTYSESERKTEEYDTQAMKYLSYLLYPLCVGGAVYSLLNIKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDDVFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKRRVNEFGESYEEKATRAPHTD 538 The following BLAST results are available for this feature:
BLAST of TCONS_00060776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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