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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060775 ID=TCONS_00060775|Name=TCONS_00060775|organism=Clytia hemisphaerica|type=transcript|length=1848bp
TAANGTTAAATAAATTTAGAACTTTCACCACTCAAAAATATCTGTAAAGa
TGAGCGAAGTACCAGAACAACAAACCAACATCAACGAATTCTGGGATTGT
ATATCTGAAATAGTCCAAGGCGGTAACGATTTCATGACACCAAGTCCATT
GGATAACGATTATTCTGAAAACGGTGAAGAGGAAGAAAACAAATTTACGT
TCATGTATCAAGAACAGCCTTACCCATCACCCGAGTATTACAATCAATAC
ACCAACTTAGACAATACCAAAATTCAAAGTCAACAATTTATTGATTCCGT
TCTTCAAGGACAACAACTTGCACAAGCTAAGATTGAAAGCCAACAATTTA
TGGATGATGTtttaaaaggtgaaaataatggAGCTTACACCACAAACAAC
AATTATATGGCATCTCCAACACTCTCACAATCTTCAAatagcaaaattca
agatgtttCTTATTTGAAAGCAATTTTACAGAACACTGCAATGACAGTTC
AGGCACCACATTCACAACAACCTGAATTATTTGTCACACAAGCTTCACCA
CTATCAGTTCAACAcgatgatgatgacgatgatgacgAGATTGACATTGA
CAGTGTCGTTTTGTTCAATGATGATATCCCACCTAAAGAAGATGATACTG
CTCTTGTCAGCGATGAAGAACTTGTTACTCTCTCTGTTCGCGACTTGAAC
AAGAGATTAAGGAATCTTACCAAAGATGAGAAAATCAAATACAAGCAACG
AAGACGTCTTTTGAAAAATCGTGGATATGCTCAAACTTGTCGCACTCGCC
GCATTCATAACCAACATgctaaaataattgaaaatgaaaaactcaaAGAA
GTATTACAACAAATTACCTTGGAGAGAAATCTCTACAAAACAAAGTATGA
AAACTTGAAAGCTGTCATCAAGAAAGCCAAGATTGAGCGTGAAAAGCGAA
AGGATTCCGTTCAAGCTTAGTAAAACACAAAACACTTCATAgaatattaa
aattttatttagccttttattttgagatttattagaacatctttcctttt
aatttttataaaacgggacataaagaaaatatatttataaCACTGTAAAT
ATGTACATAGTTTTTCGTAATGACTTAAACAAGATACTAAGATATTCCAT
TTGAATTGAAATGATTTAAAACATCCTTCTCACCCCTTTCTTTGGTCCCa
tagaaagtccttcttaaatTTCTACCCAAGATGATATTGCTTNGAAAACT
TGAAAGCTGTCATCAAGAAAGCCAAGATTGAGCGTGAAAAGCGAAAGGAT
TCCGTTCAAGCTTAGTAAAAAACAAAGCACACAACACTTCATAggatatt
aaattttatttagccttttattttgagatttattagaacatctttccttt
taatttttataaaacgggacataaagaaaatatatttataaCACTGTAAA
TATGTACATAGTTTTTCGTAATGACTTAAACAAGATACTAAGATATTCCA
TTTGAATTGAAATGATTTAAAACATCCTTCTCACCCCTTTCTTTGGTCCC
atagaaagtccttcttaaatTTCTACCCAAGATGATATTGCTTGAAAGCT
AACAAATACCGTAGATCTCGTTTGTAATTAAGTCTGAAAAGTAAATTACT
AAAATGTTTGACTGTTGTATATAGGATAGATtactatgaaaaaaaaattg
aaaatatttttcaaaaaaacaataaaatttttaaaattaataatcCTAGA
AAAATTGTAGAATTGAATTAGTTGtgattttaagaaagaaatgtaTATAA
AACTAAACGTTGAGTGTATGATTTTTTGAGGAAACATTACATCATACT Run BLAST on NCBI transcript from alignment at scaffold_349:167382..169369+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060775 ID=TCONS_00060775|Name=TCONS_00060775|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at scaffold_349:167382..169369+ (Clytia hemisphaerica)
TAANGTTAAATAAATTTAGAACTTTCACCACTCAAAAATATCTGTAAAGG
TAAgcagaaattcaaatttcatggTATTTACACAAATAAGCAAAAATCTA
GACCAGATTGAATTTAACGTTTAATTTAAATAAAGATGTTTTGATTTGTA
AGCATGGTTAAtaacaatttatttttttaatttttacagaTGAGCGAAGT
ACCAGAACAACAAACCAACATCAACGAATTCTGGGATTGTATATCTGAAA
TAGTCCAAGGCGGTAACGATTTCATGACACCAAGTCCATTGGATAACGAT
TATTCTGAAAACGGTGAAGAGGAAGAAAACAAATTTACGTTCATGTATCA
AGAACAGCCTTACCCATCACCCGAGTATTACAATCAATACACCAACTTAG
ACAATACCAAAATTCAAAGTCAACAATTTATTGATTCCGTTCTTCAAGGA
CAACAACTTGCACAAGCTAAGATTGAAAGCCAACAATTTATGGATGATGT
tttaaaaggtgaaaataatggAGCTTACACCACAAACAACAATTATATGG
CATCTCCAACACTCTCACAATCTTCAAatagcaaaattcaagatgtttCT
TATTTGAAAGCAATTTTACAGAACACTGCAATGACAGTTCAGGCACCACA
TTCACAACAACCTGAATTATTTGTCACACAAGCTTCACCACTATCAGTTC
AACAcgatgatgatgacgatgatgacgAGATTGACATTGACAGTGTCGTT
TTGTTCAATGATGATATCCCACCTAAAGAAGATGATACTGCTCTTGTCAG
CGATGAAGAACTTGTTACTCTCTCTGTTCGCGACTTGAACAAGAGATTAA
GGAATCTTACCAAAGATGAGAAAATCAAATACAAGCAACGAAGACGTCTT
TTGAAAAATCGTGGATATGCTCAAACTTGTCGCACTCGCCGCATTCATAA
CCAACATgctaaaataattgaaaatgaaaaactcaaAGAAGTATTACAAC
AAATTACCTTGGAGAGAAATCTCTACAAAACAAAGTATGAAAACTTGAAA
GCTGTCATCAAGAAAGCCAAGATTGAGCGTGAAAAGCGAAAGGATTCCGT
TCAAGCTTAGTAAAACACAAAACACTTCATAgaatattaaaattttattt
agccttttattttgagatttattagaacatctttccttttaatttttata
aaacgggacataaagaaaatatatttataaCACTGTAAATATGTACATAG
TTTTTCGTAATGACTTAAACAAGATACTAAGATATTCCATTTGAATTGAA
ATGATTTAAAACATCCTTCTCACCCCTTTCTTTGGTCCCatagaaagtcc
ttcttaaatTTCTACCCAAGATGATATTGCTTNGAAAACTTGAAAGCTGT
CATCAAGAAAGCCAAGATTGAGCGTGAAAAGCGAAAGGATTCCGTTCAAG
CTTAGTAAAAAACAAAGCACACAACACTTCATAggatattaaattttatt
tagccttttattttgagatttattagaacatctttccttttaatttttat
aaaacgggacataaagaaaatatatttataaCACTGTAAATATGTACATA
GTTTTTCGTAATGACTTAAACAAGATACTAAGATATTCCATTTGAATTGA
AATGATTTAAAACATCCTTCTCACCCCTTTCTTTGGTCCCatagaaagtc
cttcttaaatTTCTACCCAAGATGATATTGCTTGAAAGCTAACAAATACC
GTAGATCTCGTTTGTAATTAAGTCTGAAAAGTAAATTACTAAAATGTTTG
ACTGTTGTATATAGGATAGATtactatgaaaaaaaaattgaaaatatttt
tcaaaaaaacaataaaatttttaaaattaataatcCTAGAAAAATTGTAG
AATTGAATTAGTTGtgattttaagaaagaaatgtaTATAAAACTAAACGT
TGAGTGTATGATTTTTTGAGGAAACATTACATCATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060775-exon-scaffold_349-1491911889:167382..167430 | TCONS_00060775-exon-scaffold_349-1491911889:167382..167430 | Clytia hemisphaerica | exon |
| TCONS_00060775-exon-scaffold_349-1510915933:167382..167430 | TCONS_00060775-exon-scaffold_349-1510915933:167382..167430 | Clytia hemisphaerica | exon |
| TCONS_00060775-exon-scaffold_349-1575043694:167382..167430 | TCONS_00060775-exon-scaffold_349-1575043694:167382..167430 | Clytia hemisphaerica | exon |
| TCONS_00060775-exon-scaffold_349-1491911889:167571..169369 | TCONS_00060775-exon-scaffold_349-1491911889:167571..169369 | Clytia hemisphaerica | exon |
| TCONS_00060775-exon-scaffold_349-1510915933:167571..169369 | TCONS_00060775-exon-scaffold_349-1510915933:167571..169369 | Clytia hemisphaerica | exon |
| TCONS_00060775-exon-scaffold_349-1575043694:167571..169369 | TCONS_00060775-exon-scaffold_349-1575043694:167571..169369 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:167382..169369 + |
Blast
BLAST of TCONS_00060775 vs. Swiss-Prot (Human)
Match: MAF (Transcription factor Maf OS=Homo sapiens GN=MAF PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 8.563e-20 Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 2
Query: 659 SDEELVTLSVRDLNKRLRNLTKDEKIKYKQRRRLLKNRGYAQTCRTRRIHNQHAKIIENEK---------LKEVLQQITLERNLYKTKYENL 907
SDE+LVT+SVR+LN++LR ++K+E I+ KQ+RR LKNRGYAQ+CR +R+ +H ++E+EK LK+ + ++ ER+ YK KYE L
Sbjct: 262 SDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRH--VLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKL 351
The following BLAST results are available for this feature:
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