TCONS_00060762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060762
Unique NameTCONS_00060762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060762 ID=TCONS_00060762|Name=TCONS_00060762|organism=Clytia hemisphaerica|type=transcript|length=470bp
TCAGATTTATCAAGCGGCAATAAATCAAGTCGACCAACATTCAATGGACA
TCAAATATTCCACCttgaaaaaacatttgaaacaacTAAATATTTAGCAG
GTCCTGAAAGAGGTCGACTGGCCAAAGCTTTGAGGATGTCAGAAAATCAG
GTTAAGGTATGGTTCCAAAACCGTCGGACAAAATGGCGGAAAAAATTATC
TCGTGATACGACAAGGTGTGAACCCATTGAAAGTCTTTTGGAGGATCCGT
CAAGTCTTTTGAGTTATCAACGTATACATCATTtatgaatttaaattttt
caattcagattttcagattttcaggtACATATAAtttccaaatttgaatt
ttgaatttaaattccATTTTCAGACAGTATTACAACAGCCGATTTTATGT
AACTTAGCTAAACCTGAAAGACGTTTATTCGATCCCTCCGCCAAAAGATG
CCTAGCATGATAGATATATA
Run BLAST on NCBI

transcript from alignment at scaffold_348:560348..560817

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060762 ID=TCONS_00060762|Name=TCONS_00060762|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at scaffold_348:560348..560817 (Clytia hemisphaerica)
TATATATCTATCATGCTAGGCATCTTTTGGCGGAGGGATCGAATAAACGT
CTTTCAGGTTTAGCTAAGTTACATAAAATCGGCTGTTGTAATACTGTCTG
AAAATggaatttaaattcaaaattcaaatttggaaaTTATATGTacctga
aaatctgaaaatctgaattgaaaaatttaaattcataAATGATGTATACG
TTGATAACTCAAAAGACTTGACGGATCCTCCAAAAGACTTTCAATGGGTT
CACACCTTGTCGTATCACGAGATAATTTTTTCCGCCATTTTGTCCGACGG
TTTTGGAACCATACCTTAACCTGATTTTCTGACATCCTCAAAGCTTTGGC
CAGTCGACCTCTTTCAGGACCTGCTAAATATTTAgttgtttcaaatgttt
tttcaaGGTGGAATATTTGATGTCCATTGAATGTTGGTCGACTTGATTTA
TTGCCGCTTGATAAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038181XLOC_038181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060762-exon-scaffold_348-1491911889:560348..560817TCONS_00060762-exon-scaffold_348-1491911889:560348..560817Clytia hemisphaericaexon
TCONS_00060762-exon-scaffold_348-1510915933:560348..560817TCONS_00060762-exon-scaffold_348-1510915933:560348..560817Clytia hemisphaericaexon
TCONS_00060762-exon-scaffold_348-1575043694:560348..560817TCONS_00060762-exon-scaffold_348-1575043694:560348..560817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:560348..560817 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.327216	0	0	0	0	2.83834	4.78739	0	0	5.69248	6.37346	12.8748	9.41344	4.03598	5.17114	3.3129	3.66607	1.04652	2.42121	0	0.198917	13.5634	12.4382
Blast
[Close]
BLAST of TCONS_00060762 vs. Swiss-Prot (Human)
Match: NKX63 (Homeobox protein Nkx-6.3 OS=Homo sapiens GN=NKX6-3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.524e-26
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   22 KSSRPTFNGHQIFHLEKTFETTKYLAGPERGRLAKALRMSENQVKVWFQNRRTKWRKK 195
            K +RPTF GHQIF LEKTFE TKYLAGPER RLA +L M+E+QVKVWFQNRRTKWRKK
Sbjct:  140 KHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKK 197
The following BLAST results are available for this feature:
BLAST of TCONS_00060762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX632.524e-2681.03Homeobox protein Nkx-6.3 OS=Homo sapiens GN=NKX6-3... [more]
back to top