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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060760 ID=TCONS_00060760|Name=TCONS_00060760|organism=Clytia hemisphaerica|type=transcript|length=1386bp
CTTCTTCCATCAGTGTCGCATGTTTCAGTGTAAAACGAAATCTCTCACAG
AATTATCGTCCACATTATAAACACACATAATCGGCTCAGCTTTCACAGTA
TACTCACTCCCAAAAGCATTTTGAGCCAAATCAGCATACACGtgacattt
ttctttcaatctCTCAAAATGAGATGTGTATCCATCGCAGCCGACGAAAT
AGTAATCACCATCATTTCGTATGATAGTTTCATCATCTGTTAATTCGGCT
TTCAAATCTTCATCAACATCATAAGTGATTCGGTATTCTTGATGACGCTG
CAAATTCTCATAATACCAACAGCATGCCAAATGGATAACATAGAGAACAT
CATTTTTGGTATCAACACATATAAAATGCGGTGTTTTGAAATCTTCCTCG
TACAACCCTTGATGGTTTTGCTTCTCTATATCTCTTGGTGATTCCCAGAT
ATGCCATCGACTTTTCTTCTCATTCCATTGGTGATCCAAAGCTTCTTCCT
TGGTGTCTTTGACATTGTCATCAGTTAATAATTGAATTTCTAAATCATCA
GCCTCTTTGCCGAAGAAGACGTTTTTGATTATGAAATGTCGCATCAAGTC
TACATCCATCGGTTTGAAactcatttccaaaacatcgtGATTCTCCATTT
GCTTGATGAGATATTCTGccattttttgttgattttataagTCCTATTCC
TTTGATTACTGTTAGAAATAAGAAGTTTCACCAAAGTATTTCAACACCGC
AGCAGTTATAATGTTAGTGCATATAGCAACCAAAGGTCAGCACGGTCGAG
AAAAAGATAACAAGGTATGTTTTTTCTTGGTAATCGAAACCAAGTAATCa
tccaaaaatagaaaattctttTAATTCCAATTCCAATAAACAATTAAAGA
TGATTATCACAAATTGTTCTTTGGCAAGCCAATCATGAAGAATATGAGCA
CTGGAACTGACTGGAACAAACTATAAACCAAGCGAAAAATtggttttttt
cttgttttgatttctcACAACTTCTCTTGTACTAGTGTTTCACAGTATAG
ATTTTTTTTGACAAGTTCGTTTAATTTCAATATTGATGTGATAATATTGA
TTGagaatttttcataagaaccaatCTGAAACTTCTGTCCTGTTGTCAGC
TCTTGTCTAATCACATAAAATATTATTCATTTAATCCAGCACCGCGAACT
GCCCTTAGGGCGCGTATAATGATGGTCCAACAAACTtcttcaacaaaaaa
aacattcaaagcCGCCTTACCACTTGTCTGAAACGAACGCAAAAGCAACT
TGGTTCTAATGTTTGTTCTTAAAACTAAAGTCCTCAATAATGTTGCAGCA
ATTAAGACATTAAGTTGAGGTTATACTGTAGCTACC Run BLAST on NCBI protein sequence of TCONS_00060760-protein >TCONS_00060760-protein ID=TCONS_00060760-protein|Name=TCONS_00060760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MAEYLIKQMENHDVLEMSFKPMDVDLMRHFIIKNVFFGKEADDLEIQLLT
DDNVKDTKEEALDHQWNEKKSRWHIWESPRDIEKQNHQGLYEEDFKTPHF
ICVDTKNDVLYVIHLACCWYYENLQRHQEYRITYDVDEDLKAELTDDETI
IRNDGDYYFVGCDGYTSHFERLKEKCHVYADLAQNAFGSEYTVKAEPIMC
VYNVDDNSVRDFVLH Run BLAST on NCBI transcript from alignment at scaffold_348:532337..533722 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060760 ID=TCONS_00060760|Name=TCONS_00060760|organism=Clytia hemisphaerica|type=transcript|length=1386bp|location=Sequence derived from alignment at scaffold_348:532337..533722 (Clytia hemisphaerica)
GGTAGCTACAGTATAACCTCAACTTAATGTCTTAATTGCTGCAACATTAT
TGAGGACTTTAGTTTTAAGAACAAACATTAGAACCAAGTTGCTTTTGCGT
TCGTTTCAGACAAGTGGTAAGGCGgctttgaatgttttttttgttgaaga
AGTTTGTTGGACCATCATTATACGCGCCCTAAGGGCAGTTCGCGGTGCTG
GATTAAATGAATAATATTTTATGTGATTAGACAAGAGCTGACAACAGGAC
AGAAGTTTCAGattggttcttatgaaaaattctCAATCAATATTATCACA
TCAATATTGAAATTAAACGAACTTGTCAAAAAAAATCTATACTGTGAAAC
ACTAGTACAAGAGAAGTTGTgagaaatcaaaacaagaaaaaaaccaATTT
TTCGCTTGGTTTATAGTTTGTTCCAGTCAGTTCCAGTGCTCATATTCTTC
ATGATTGGCTTGCCAAAGAACAATTTGTGATAATCATCTTTAATTGTTTA
TTGGAATTGGAATTAaaagaattttctatttttggatGATTACTTGGTTT
CGATTACCAAGAAAAAACATACCTTGTTATCTTTTTCTCGACCGTGCTGA
CCTTTGGTTGCTATATGCACTAACATTATAACTGCTGCGGTGTTGAAATA
CTTTGGTGAAACTTCTTATTTCTAACAGTAATCAAAGGAATAGGActtat
aaaatcaacaaaaaatggCAGAATATCTCATCAAGCAAATGGAGAATCac
gatgttttggaaatgagtTTCAAACCGATGGATGTAGACTTGATGCGACA
TTTCATAATCAAAAACGTCTTCTTCGGCAAAGAGGCTGATGATTTAGAAA
TTCAATTATTAACTGATGACAATGTCAAAGACACCAAGGAAGAAGCTTTG
GATCACCAATGGAATGAGAAGAAAAGTCGATGGCATATCTGGGAATCACC
AAGAGATATAGAGAAGCAAAACCATCAAGGGTTGTACGAGGAAGATTTCA
AAACACCGCATTTTATATGTGTTGATACCAAAAATGATGTTCTCTATGTT
ATCCATTTGGCATGCTGTTGGTATTATGAGAATTTGCAGCGTCATCAAGA
ATACCGAATCACTTATGATGTTGATGAAGATTTGAAAGCCGAATTAACAG
ATGATGAAACTATCATACGAAATGATGGTGATTACTATTTCGTCGGCTGC
GATGGATACACATCTCATTTTGAGagattgaaagaaaaatgtcaCGTGTA
TGCTGATTTGGCTCAAAATGCTTTTGGGAGTGAGTATACTGTGAAAGCTG
AGCCGATTATGTGTGTTTATAATGTGGACGATAATTCTGTGAGAGATTTC
GTTTTACACTGAAACATGCGACACTGATGGAAGAAG Coding sequence (CDS) from alignment at scaffold_348:532337..533722 >TCONS_00060760 ID=TCONS_00060760|Name=TCONS_00060760|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_348:532337..533722 (Clytia hemisphaerica)
atggCAGAATATCTCATCAAGCAAATGGAGAATCacgatgttttggaaat
gagtTTCAAACCGATGGATGTAGACTTGATGCGACATTTCATAATCAAAA
ACGTCTTCTTCGGCAAAGAGGCTGATGATTTAGAAATTCAATTATTAACT
GATGACAATGTCAAAGACACCAAGGAAGAAGCTTTGGATCACCAATGGAA
TGAGAAGAAAAGTCGATGGCATATCTGGGAATCACCAAGAGATATAGAGA
AGCAAAACCATCAAGGGTTGTACGAGGAAGATTTCAAAACACCGCATTTT
ATATGTGTTGATACCAAAAATGATGTTCTCTATGTTATCCATTTGGCATG
CTGTTGGTATTATGAGAATTTGCAGCGTCATCAAGAATACCGAATCACTT
ATGATGTTGATGAAGATTTGAAAGCCGAATTAACAGATGATGAAACTATC
ATACGAAATGATGGTGATTACTATTTCGTCGGCTGCGATGGATACACATC
TCATTTTGAGagattgaaagaaaaatgtcaCGTGTATGCTGATTTGGCTC
AAAATGCTTTTGGGAGTGAGTATACTGTGAAAGCTGAGCCGATTATGTGT
GTTTATAATGTGGACGATAATTCTGTGAGAGATTTCGTTTTACACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060760-exon-scaffold_348-1491911889:532337..533722 | TCONS_00060760-exon-scaffold_348-1491911889:532337..533722 | Clytia hemisphaerica | exon |
| TCONS_00060760-exon-scaffold_348-1510915933:532337..533722 | TCONS_00060760-exon-scaffold_348-1510915933:532337..533722 | Clytia hemisphaerica | exon |
| TCONS_00060760-exon-scaffold_348-1575043694:532337..533722 | TCONS_00060760-exon-scaffold_348-1575043694:532337..533722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:532337..533722 . |
Blast
The following BLAST results are available for this feature:
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