TCONS_00060757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060757
Unique NameTCONS_00060757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060757 ID=TCONS_00060757|Name=TCONS_00060757|organism=Clytia hemisphaerica|type=transcript|length=254bp
GAACATCTCCATTGGCGTTAACAGCAACATTCCCAGCTCCATCATTGCCA
GAATCACTTATGTCACCTGGTGTGAAGAGTTGAACATTTAGGTTGCCATT
TATCAGTAAACCTAGAAGGTAGCTTCGTACACCTTCCGCAGTGGCTTGGC
GGGCGGGAAATTGTCTTGCTCCGGTAAATACTCTTCCTCCGACACTGTTT
CGTAAAGTCTCAAAAATTTGTTGAGCCATGATGGTGAAAACTTGACACTC
CTTG
Run BLAST on NCBI

transcript from alignment at scaffold_348:519024..519277

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060757 ID=TCONS_00060757|Name=TCONS_00060757|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at scaffold_348:519024..519277 (Clytia hemisphaerica)
CAAGGAGTGTCAAGTTTTCACCATCATGGCTCAACAAATTTTTGAGACTT
TACGAAACAGTGTCGGAGGAAGAGTATTTACCGGAGCAAGACAATTTCCC
GCCCGCCAAGCCACTGCGGAAGGTGTACGAAGCTACCTTCTAGGTTTACT
GATAAATGGCAACCTAAATGTTCAACTCTTCACACCAGGTGACATAAGTG
ATTCTGGCAATGATGGAGCTGGGAATGTTGCTGTTAACGCCAATGGAGAT
GTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038176XLOC_038176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060757-exon-scaffold_348-1491911889:519024..519277TCONS_00060757-exon-scaffold_348-1491911889:519024..519277Clytia hemisphaericaexon
TCONS_00060757-exon-scaffold_348-1510915933:519024..519277TCONS_00060757-exon-scaffold_348-1510915933:519024..519277Clytia hemisphaericaexon
TCONS_00060757-exon-scaffold_348-1575043694:519024..519277TCONS_00060757-exon-scaffold_348-1575043694:519024..519277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:519024..519277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43989	0	0.815161	0.797508	3.88356	0.76721	1.85121	1.73308	0.606686	0.751478	0	0	37.3475	23.3709	0.40881	0.438716	2.16185	0	141.584	149.759	0.696086	0	0.825477	1.50096	0	2.06959	0.987191	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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