TCONS_00060753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060753
Unique NameTCONS_00060753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060753 ID=TCONS_00060753|Name=TCONS_00060753|organism=Clytia hemisphaerica|type=transcript|length=625bp
CTTCACAAACATCGATTGCTtgctataaatttatttttcatggtCCATTA
GTTTAGCATTTACAAGGTTTCAAGGGTAAATAATTGATTAATTAATTACT
GTATCGCGTTTTCGTTGGAAAGATCGAGTTGAGTTGAACATTTTATCAAC
AATAATAATATATCtacacaaaaatgaaaaataaaacaagaagtGCTCAT
ATTCAGCGAGCGCATACCGACCAGTGAGATATGTGATGAGGTCATTTTCC
ACCTGATTATTTTCTCACACGAGGGTACAGAACAATAACCATAACGCAAA
ATTGATCAACAAAACTACTCTGGAGTAACTTTTTCTGGGGTAAGTTTTCG
GGAATCGAAAAATGGGTTCAAAAAGATAAAGCATaataaaaataacatca
aaaataATCTAAATAGCATAAACGACCAGTTGTCTTTAAtagtccttttc
ataaattacgtcacgaacctcacttgcctcgttttggtgaTTAACTCCTA
GCGGATTAAAAttactttctatttataaaaaaatcatttaatgtctcaag
ggacataatcactatgaaaattgtttgaatacgaggcaagtgatgttcgt
gacgtaatttatgaaaaggtctata
Run BLAST on NCBI

transcript from alignment at scaffold_348:392308..392932

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060753 ID=TCONS_00060753|Name=TCONS_00060753|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at scaffold_348:392308..392932 (Clytia hemisphaerica)
tatagaccttttcataaattacgtcacgaacatcacttgcctcgtattca
aacaattttcatagtgattatgtcccttgagacattaaatgattttttta
taaatagaaagtaaTTTTAATCCGCTAGGAGTTAAtcaccaaaacgaggc
aagtgaggttcgtgacgtaatttatgaaaaggactaTTAAAGACAACTGG
TCGTTTATGCTATTTAGATtatttttgatgttatttttattATGCTTTAT
CTTTTTGAACCCATTTTTCGATTCCCGAAAACTTACCCCAGAAAAAGTTA
CTCCAGAGTAGTTTTGTTGATCAATTTTGCGTTATGGTTATTGTTCTGTA
CCCTCGTGTGAGAAAATAATCAGGTGGAAAATGACCTCATCACATATCTC
ACTGGTCGGTATGCGCTCGCTGAATATGAGCacttcttgttttatttttc
atttttgtgtaGATATATTATTATTGTTGATAAAATGTTCAACTCAACTC
GATCTTTCCAACGAAAACGCGATACAGTAATTAATTAATCAATTATTTAC
CCTTGAAACCTTGTAAATGCTAAACTAATGGaccatgaaaaataaattta
tagcaAGCAATCGATGTTTGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038172XLOC_038172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060753-exon-scaffold_348-1491911889:392308..392932TCONS_00060753-exon-scaffold_348-1491911889:392308..392932Clytia hemisphaericaexon
TCONS_00060753-exon-scaffold_348-1510915933:392308..392932TCONS_00060753-exon-scaffold_348-1510915933:392308..392932Clytia hemisphaericaexon
TCONS_00060753-exon-scaffold_348-1575043694:392308..392932TCONS_00060753-exon-scaffold_348-1575043694:392308..392932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:392308..392932 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6224	10.2349	7.54861	7.19114	57.2981	35.493	73.5557	88.9818	47.8586	44.3641	26.959	40.2099	32.2355	28.9966	17.5301	15.5089	35.8641	33.614	28.2495	28.6627	37.879	34.3571	22.5729	22.798	33.8757	40.6921	32.5572	28.9156	20.1338	18.4498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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