TCONS_00060738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060738
Unique NameTCONS_00060738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060738 ID=TCONS_00060738|Name=TCONS_00060738|organism=Clytia hemisphaerica|type=transcript|length=1211bp
CTTTcaggtaaaaatcaaaataatggtGTTTTAATAAAGGAAAATTTCTA
ATAATGgctgcccagctggcacacaacgttgtttcaatgttcatctaacg
ttaaatggacgctgtgaacgttagataaacgttgaaacaacgatGTGTGC
CAGCTGGCTGGTCATGTTTTAAGAATAAATAGAGGAGCTTTATTCAGTTT
GAGAACAATCTTTCAACAATTTGGAAAAAGCACAGAAATTCGTAAAAGGA
AAtcttctggtctgtattttacacGTTGCTGAGATTTTTTACTACTACTC
AACCGAGCTGAAGATTGCCTTCTTGGTTGTTTCAAGTCTGTTGTTGATGT
TTTCCAAGTCGAAAGATTAGACCATGACCTGGCCCGTCTTATATGACGCT
TATCCAACGTGGCATTAGCCTGGAGCTGTGGAATTTCGTCGACATCTGAG
CTAGTGACAATGGACGCTGGTTGACAGGTAAGCAAacgatgacgtaatgt
tttccaATATTCTGGatcatttttctcatctttatgCTCGTCCGGGATGC
TTCCGTTGCTTTTCGATTTCCGTAATTCGGTATGACTGACCGGTTTATAT
AGATTACTTGGAGATGAATTAGAACGATCTCGGAAANGACGCTTATCCAA
CGTGGCATTAGCCTGGAGCTGTGGAATTTCGTCGACATCTGAGCTAGTGA
CAATGGACGCTGGTTGACAGGTAAGCAAacgatgacgtaatgttttccaA
TATTCTGGatcatttttctcatctttatgCTCGTCCGGGATGCTTCCGTT
GCTTTTCGATTTCCGTAATTCGGTATGACTGACCGGTTTATATATATTAC
TTGGAGATGAATTAGAACGATCTCGGAAATTTGGCTCAACAGACAGACAA
CTAGCTGTGCATGGCCGATGTAGATTCTCATGACTTCCAGTTAAAAAGGG
ACTTCGATTCTCTTTACCCTTGGAAAGGCCTCCTTTACTATTTATACATT
CAGACTCAGCTGAACGTCGTCTCAAACTgtcttttaaaagtgtttttcgT
ATATCAGTATGCTCAACCTTGCCGGCTGTTGTTGCACTCAGAGGCGACTG
TGGTGGTGAGATGACAATTTGACATAGATTGTTATTGTTATTGGTTGTGT
TAGAATGTGTTGGCGGATGTGGAATGAAAATATTCTCGTGTTGTTGATGG
CGGTAGTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_348:482437..487967-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060738 ID=TCONS_00060738|Name=TCONS_00060738|organism=Clytia hemisphaerica|type=transcript|length=5531bp|location=Sequence derived from alignment at scaffold_348:482437..487967- (Clytia hemisphaerica)
CTTTCAGGTAAAAATCAAAATAATGGTGTTTTAATAAAGGAAAATTTCTA
ATAATGGCTGCCCAGCTGGCACACAACGTTGTTTCAATGTTCATCTAACG
TTAAATGGACGCTGTGAACGTTAGATAAACGTTGAAACAACGATGTGTGC
CAGCTGGCTGGTCATGTTTTAAGAATAAATAGAGGAGCTTTATTCAGTTT
GAGAACAATCTTTCAACAATTTGGAAAAAGCACAGAAATTCGTAAGTATC
AATTTCACTGATTTCTCTTAAATGTGTGGGTGTGTGTGTTTGTAGTTTGA
GATTGTTATCTACGAATTCCAAAATATGGCTGTTAATTTCTTTTCTCTTA
ATTCAACGCTTATTTATTAAAAATGGTATTCAGATGTTTCTGGTTTATGT
TTCTTTATTTAATTAAATATCTTCTTTACAAGGGATAAATTCCGTGGAGG
GGGGCCACTCAAGTTAAACGACCTACCGTACGTGCGGCCCTTAAGGGTCC
CTTCTCCAAGCTTACCAAAATGCACAGTAAGGGTCAAAATGAGCAAAGAT
GAGAAAAGTACACTCTAAGGAGTAAAATTTGACCATATCGTGCCTAAAAA
CGGTCAAATATCTTAAAGAAAATGCACCGTAAGGGAAGTTTTTTTGCACA
AATTTACTCAAATTTGGCTAAATTTTCTTTGCACTGTAAGGGTCTGACTT
CAAAGGCCTAATTTTAGGCCGCACGTATGGTCGTTTTCTAATCGAGTGCC
CCACCCCCACCGGGACAAAATTTGATAAGTAATTTCAGAAATCTTATAAT
CTTATTACATGCAAATCTTAAAAGATTTGAAATATACTCCATAAGAAATT
ATAAATTCTTGGATACAGAAAGTTTTACTAACACAATACTTGTCTTATGA
ATAATTTTTAAATTTTCATAATAATTTATTTTGCAAACAAAATAATTCAT
CCATACAACGTCACGTGACTTGGTATTGATTGATACGATGGTAAATGAAT
TTCGAAGGTATCATAAGGGATCTTTAAATTTGTTTTCGGGATGTCTTAGG
ATAAAGGCTGCCATCGCAATACACAAACTCATTATGGGAGAACACTTGGC
ATCGGTGGCAAAAACTATCCTTAGGATCGTAGGTTCGTCCTCTGCACCTC
TTTTCCTTGATCAAGACGAAACCATTTCGACAACGCTCTGATTCGATATC
ATAAAGACGCTTTCTGAAATTGTAATAATTCGAAATATATCGTAATGAAA
CATTAAAAACAAACATCTTGATATTGCGAATTAGTGGTTTAATTCTAAAA
GCTAACCCAGCTGGCACACAACGTTGTTTCAACGTTTATCTAACGTTCAC
AACGTCCATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCAGCT
NATATCGTAATGAAACATTAAAAACAAACATCTTGATATTGGGAATTAGT
GGTTTGATTCTAAAAGCTAAAGAAAATGATTCTTACAAACATTAACTCAC
CCACAGCACCGTTTGAAAGGTTCTTTTGCCAGTTTCACACCATCACAACA
AAATTCTGCAACTCGATCATATCTCTCTCCGCCACCTACAAAAATGTGCG
AAAAAAGCTATACAATTTAAAGTTATTCAAAACTTAACCGTCTGAAGCCN
CATGTGCACAAAAAGCTATACAATTAAAAGTTATTCAAAACTTAACCGTC
TGAAGCCTTAGGAGAGTCCCTATTTTAGATTTAAAACTTTTGTGTAGACT
AAATTTTACCAATCAATGTCCTCTGGCAAAAATCGCGTAAAAGTGGAAAG
AATTTGCAAATGTCGTGAAAGTTATCCACCAAAGAACAGTAGAACAGTAT
ATCATGTATCACAAAAACCTCGATGTAGTTGCGGATAGCAAATAAACAGT
CGGTAGAGTCTTCAACAGCAAAAAGCCGCCTGTGGTTCTTGTGCTACATT
CACGTGATTGGCAAATACTGAAAGGTTATCTTACAATATCTCCACTTCTG
CTTTGCTGTAGGGCATCTGTGGATCACTGGAGTCGGACGAATCTGTTCTC
CGAGAGTTATACCAAATAGAAGAACCACCAAAGATATTGATAGAACAAAT
CTAGCCATGATGATAGAATGTCGCACTTTGCCTATTATAGCTTGAATAAC
CACACTTAAAAGCACTAGCAAATGTTATTTACACGTACTTAAGGTTGAAA
TTAAAGCAAGCGATGTGCAGCTATGTCCAGGGGCGTATGTAGGATTTTTA
GGATACGCTGCAAAAAAGATTCAGCTATATATAGTGATTCAGGAAATTTG
CTCCAAGCATCTAAAGCCATTTGACGAGTCTTGACTTTTAACGTTTTGAC
ACTAACAGCCATCAAATCCCGGGCAAACCCTGCATTTTGACCTCATCCAG
GTCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTCCGGGTAGGCTA
AAAACAAGCTGCGACAAAAAAGACTCTGGAGCATACCCTGCGAGTGCATG
TTTTGCAGGGGTGTCGCACCGCCCCTGATGTCTACCGGCATTGGCCTTTT
TATACTGATCGCTCTACCTAGAAAAAAGTTTTTTGAACAAACACTATGTA
CCATATTATTTTAATGGTCTTTTTGTGTTCCCTTTTTGCTTCATACGAGT
CAAAGGTCGATATAATGCATTTTTCCTTCTTTCTTACTCAATTTCTTTGC
CACTTTTTCCTATATATCCCTGATAAAAATATTGTTAATGTCGATCCAAC
ATCCGTTAAAATGAAAATCGAAATAACATTTTGTGACAGGATTTTCTTAC
TTTAGTGGGTGGGGTTACCACCTTACCTAAAAGACGATGTTTGACTTGAA
TCTCCTAGAAAGTGGTTCCACAATATTTCCGCACCCATTGACCTTTTTTT
CTTGTAACTCTCCCATGTATATCTGCTGCTATTTATTAGGGAATGACTTA
TAATGAAAATTGACTTACAGATCTTTGGTGCTTTAAAGTTGTTATACCTG
TTTCATATCAGACACATATTTCATATCAGGACAGTGTCTTTCTATTGTTA
TATTGTGCTGATATAAACAAAACGATGTTTTTCTTTTCCTCTTTCTGACC
AATCTTGCTCCACATCCGTGTTAATCCAATGTGAAAAAGCTTGTGAGTTA
AAAGTGATGAGCAAGCAAACGATATCAATCTTATTTAAAAACAAAACCTT
TAGGAACCGAGATTTAATTTTGAAAAGAAAAACAAGTATGGTATGTTTTG
GTCTGAGATAGCCCTTGCAAAGGGACTGGGTATTTTTAAATCAATAATAT
TGGTCTTTATCATTATTAATGAATACAACGTTCGTTTTCAAAGTAATTTT
AGTTACCATCGGAATTGAATATCTATTGTTTGAACCATGGATTTATCATA
GAGACTCTGGATAAACATCGAATGAAACGGTGGAGAGTGAAACTGTTATC
TTTCCACTGTTTCAGAAAAGATTTTGAAAAATGATATACTCTATAATTTC
TAAAAAATTCTCTAACTATTTTACTTCTGCTGGCCAAAAGTTTGAAAACA
AGCTAGAATACAAAGCGGATACATGTTTTTTTATAAGCATATAAAAATCC
GAAAACAGGCTCAGAGATGCTTAGTTCGAAAGCCTAATAAAGCTAGGAAA
ATGCTTGAGGGATGCTTATATCCAAAGCAAAAATTTAGGGAAATTCTGAA
AAGTTTTAAAATTCCAGCCAAAAAAAAGCCACAATCAGGAAAAAACATTT
TTCATAGGCTTGCTATATGCTTAATTTTTCCCCATATCTGAGCCTAGATA
TGCTTACAAGTGCAATGCTTATAAAAAACATGTACATTTATTAAATCTGG
TGTGAGCAAAACATCATCAGACGAGTAAAATCAAACAAAATGCTTATAAT
GACACGACATTTTAGTTGGGAAAGTTGTTCTTATATTTTTCCGAGAAGAG
CTAAGATTGACATATGTTAGACGTGTGTCTCATAGCTCAACTGTAGTATT
AAAATCTTTTGGTGGCACGTGGTGGCACGATGGATTTTTTGAGGTTGAAG
TTTAGAAATTTCTGGTGTCAATATTCAATTTCTTATACATAGGATGTTTT
TGTATCTTTCTTGCGATTTTGAACGTCATAACGACGTATATCGCTCTAAG
TGTCTCTCAAAAAATATTTATTAAGTATAATACTGTTTTTATTCTCAAAA
AATTGCCATTCCAATTTCAGTTGTTATGTTTCAATACTTGACACATTGTT
TGTCTAAAATGCGGACTGCTATGAACCTCATGATTCTCTTCATGTTTTTG
TTCAATTTCAGGTAAAAGGAAATCTTCTGGTCTGTATTTTACACGTTGCT
GAGATTTTTTACTACTACTCAACCGAGCTGAAGATTGCCTTCTTGGTTGT
TTCAAGTCTGTTGTTGATGTTTTCCAAGTCGAAAGATTAGACCATGACCT
GGCCCGTCTTATATGACGCTTATCCAACGTGGCATTAGCCTGGAGCTGTG
GAATTTCGTCGACATCTGAGCTAGTGACAATGGACGCTGGTTGACAGGTA
AGCAAACGATGACGTAATGTTTTCCAATATTCTGGATCATTTTTCTCATC
TTTATGCTCGTCCGGGATGCTTCCGTTGCTTTTCGATTTCCGTAATTCGG
TATGACTGACCGGTTTATATAGATTACTTGGAGATGAATTAGAACGATCT
CGGAAANGACGCTTATCCAACGTGGCATTAGCCTGGAGCTGTGGAATTTC
GTCGACATCTGAGCTAGTGACAATGGACGCTGGTTGACAGGTAAGCAAAC
GATGACGTAATGTTTTCCAATATTCTGGATCATTTTTCTCATCTTTATGC
TCGTCCGGGATGCTTCCGTTGCTTTTCGATTTCCGTAATTCGGTATGACT
GACCGGTTTATATATATTACTTGGAGATGAATTAGAACGATCTCGGAAAT
TTGGCTCAACAGACAGACAACTAGCTGTGCATGGCCGATGTAGATTCTCA
TGACTTCCAGTTAAAAAGGGACTTCGATTCTCTTTACCCTTGGAAAGGCC
TCCTTTACTATTTATACATTCAGACTCAGCTGAACGTCGTCTCAAACTGT
CTTTTAAAAGTGTTTTTCGTATATCAGTATGCTCAACCTTGCCGGCTGTT
GTTGCACTCAGAGGCGACTGTGGTGGTGAGATGACAATTTGACATAGATT
GTTATTGTTATTGGTTGTGTTAGAATGTGTTGGCGGATGTGGAATGAAAA
TATTCTCGTGTTGTTGATGGCGGTAGTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038160XLOC_038160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060738-exon-scaffold_348-1575043694:487727..487967TCONS_00060738-exon-scaffold_348-1575043694:487727..487967Clytia hemisphaericaexon
TCONS_00060738-exon-scaffold_348-1575043694:482437..483406TCONS_00060738-exon-scaffold_348-1575043694:482437..483406Clytia hemisphaericaexon
TCONS_00060738-exon-scaffold_348-1510915933:487727..487967TCONS_00060738-exon-scaffold_348-1510915933:487727..487967Clytia hemisphaericaexon
TCONS_00060738-exon-scaffold_348-1510915933:482437..483406TCONS_00060738-exon-scaffold_348-1510915933:482437..483406Clytia hemisphaericaexon
TCONS_00060738-exon-scaffold_348-1491911889:487727..487967TCONS_00060738-exon-scaffold_348-1491911889:487727..487967Clytia hemisphaericaexon
TCONS_00060738-exon-scaffold_348-1491911889:482437..483406TCONS_00060738-exon-scaffold_348-1491911889:482437..483406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:482437..487967 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.161174	0.301778	0	0.383084	0	0	0	0	0.0711853	0.130228	0.0779767	0.0658397	0	0	0.228997	0.177363	0	0.208736	0	0.760294	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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