TCONS_00060731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060731
Unique NameTCONS_00060731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060731 ID=TCONS_00060731|Name=TCONS_00060731|organism=Clytia hemisphaerica|type=transcript|length=881bp
TTAGAATCCATGCGACGATTCATCATTGTGCAAACACGGCAGTTTTTGTC
GAGCAAACTTTCACAATGAAACGTATTTTTGTGATTACTGTTTACCTCCT
TTCACTGGAAAACACTGCAATGAAACCTTGCCTGGAGAAGACACTTCAAG
TATTTTAAGTAAAGACCAAACAGATCCAGACATTTGGTCAGGAAAAAAAG
CATCATGtacacaaataaaaaaaaattatggcaGTACTGCAGCGAGAGAA
TGGATTCACCCGTGGCGTGATTCGAGAAGAGTCAAAGTCAACTGTGCAGG
TATGTACATTTAAGATTTCACTACAAAATTAACTGTGCAGGTGTATACAT
TTTAGTCTTTACTACAAAGTTAACTGTGCAGGTGTATACATTTTAACTTT
AGACTTTACGACTTTTTGCGTGAACCTGTCAAAGTTTTACATTAATTTGT
CCATCTTCCGTCTTGGATCTTGTGACGTTTCAACCTTATTTTGTCAAAGA
AAGAAGCTTCATAAAGCCTGGCTAACACCGTTGAGAAAAAGCACGAACCT
TAAACTTccgtggggattaaatttcgcggttttcgcggaAATTAGGTCCC
ATAGGAAATTTAGAAAGATATTATCAATCCGCGAAATAttcataaattta
tttcaatactCAAGAGAATATGGCAATGAAAAGACCTCATGGGAATTCTA
CGTTTCAACCTTCAATTAtcttggaactaattttcgtgggaactaatttt
cgcggtcgaaaaaaaatatctgaaaaattgcatttcgcatgttttaattt
tcgcggttttgtcctttttcggacaaatttcgttctttttcctagggatt
tttcaaatttttcgataaagttgggaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_348:467343..469262-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060731 ID=TCONS_00060731|Name=TCONS_00060731|organism=Clytia hemisphaerica|type=transcript|length=1920bp|location=Sequence derived from alignment at scaffold_348:467343..469262- (Clytia hemisphaerica)
TTAGAATCCATGCGACGATTCATCATTGTGCAAACACGGCAGTTTTTGTC
GAGCAAACTTTCACAATGAAACGTATTTTTGTGATTACTGTTTACCTCCT
TTCACTGGAAAACACTGCAATGAAACCTTGCCTGGTAAGAATCAACCAAT
TTCAATCATTTTATTTTTTATATTTTTTGTGGTAAGGATCAACCAATTTC
AATCATTTTATAAAGAAGAAATTATAAATATCTTAAATGACTTTTTAAAC
AATACACGGATTTCGAATTAGATTTTTGCGTAGCTTTTGCTTTGAACTCA
TGTAAATTTGCACAAAAAAAACAAAAAACAAGTAAACAAAACAGAAAGTG
GCCGTGCAAGAAGCAATTTTAGCTGATTTTTCCATTTTGACATACTCTAT
GGGTCACTGTAAACATAGAAATAATAAAGCAGTTGCAGAATCTTATTTCT
TTCATCGAATTTAAAAATAGGAAAACGTTTTTTGAATAAATAAAAAGTGA
TTTTTAAGGAAACTTTTGGATTGTTATAGGTAAGTACGATATTTATCTAG
GGTTAACATAGTAGACAGGACCCAAATAGTCCAAATGAAACTATTTTATA
ACTGAACCCTTGTATTCTCAGGAGAAGACACTTCAAGTATTTTAAGTAAA
GACCAAACAGATCCAGGTAAATGGCTTTCCAAATCTTATCCACTCCAATA
CAAAGAAACTGAAGAAGAAATTCGACCTTTAAAAGTTTCTCACTCGTCTG
TGCTGTAAACAGACCCGATATTCACAGAAAGTTTAACAATACACCTTTTT
CCGGTTAGCCGTTTCGTATAAAAAGTCACCAAAATTTCGAGTAAACAAAC
TGATTGGCTAAAGGCAAAAACATAAATAAAAAAATGTACGAGGAAAATGT
GCTTTCTGAATTCTGTGCCCTTACTCTGGACATTTTTTTGTTTATGTTTT
TACTTTTAGCCAATGAGATGGTTTGTTTACTCGAAATTTTGGTGACTTTT
TATACGAAGCAGCTAACCGTAAAAAGGTGTATTAATTTCCGTATTACGCA
ACGCTTTAATCGATTTTGCTACGATTGCAATGGTAAATTGAAAGCCCGCC
CCCTAGTCAGACTCTTCCAAACAATTCGAACGATTTTTCACCCAAAATAT
TTGCTGAAATGTTTTTCGTTTTGGCAAGTTTCCATCTCATCGCATTTCAA
ATCGATTTCTTTTACTAGACATTTGGTCAGGAAAAAAAGCATCATGTACA
CAAATAAAAAAAAATTATGGCAGTACTGCAGCGAGAGAATGGATTCACCC
GTGGCGTGATTCGAGAAGAGTCAAAGTCAACTGTGCAGGTATGTACATTT
AAGATTTCACTACAAAATTAACTGTGCAGGTGTATACATTTTAGTCTTTA
CTACAAAGTTAACTGTGCAGGTGTATACATTTTAACTTTAGACTTTACGA
CTTTTTGCGTGAACCTGTCAAAGTTTTACATTAATTTGTCCATCTTCCGT
CTTGGATCTTGTGACGTTTCAACCTTATTTTGTCAAAGAAAGAAGCTTCA
TAAAGCCTGGCTAACACCGTTGAGAAAAAGCACGAACCTTAAACTTCCGT
GGGGATTAAATTTCGCGGTTTTCGCGGAAATTAGGTCCCATAGGAAATTT
AGAAAGATATTATCAATCCGCGAAATATTCATAAATTTATTTCAATACTC
AAGAGAATATGGCAATGAAAAGACCTCATGGGAATTCTACGTTTCAACCT
TCAATTATCTTGGAACTAATTTTCGTGGGAACTAATTTTCGCGGTCGAAA
AAAAATATCTGAAAAATTGCATTTCGCATGTTTTAATTTTCGCGGTTTTG
TCCTTTTTCGGACAAATTTCGTTCTTTTTCCTAGGGATTTTTCAAATTTT
TCGATAAAGTTGGGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038158XLOC_038158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060731-exon-scaffold_348-1575043694:469129..469262TCONS_00060731-exon-scaffold_348-1575043694:469129..469262Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1575043694:468597..468641TCONS_00060731-exon-scaffold_348-1575043694:468597..468641Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1575043694:467343..468044TCONS_00060731-exon-scaffold_348-1575043694:467343..468044Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1510915933:469129..469262TCONS_00060731-exon-scaffold_348-1510915933:469129..469262Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1510915933:468597..468641TCONS_00060731-exon-scaffold_348-1510915933:468597..468641Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1510915933:467343..468044TCONS_00060731-exon-scaffold_348-1510915933:467343..468044Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1491911889:469129..469262TCONS_00060731-exon-scaffold_348-1491911889:469129..469262Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1491911889:468597..468641TCONS_00060731-exon-scaffold_348-1491911889:468597..468641Clytia hemisphaericaexon
TCONS_00060731-exon-scaffold_348-1491911889:467343..468044TCONS_00060731-exon-scaffold_348-1491911889:467343..468044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:467343..469262 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.263971	0.154448	0.298882	0.233927	0.244256	0	0.0687067	0.0635441	0.126022	0.110213	0.0534877	0.210964	0.862823	0.521391	0.137923	0.174915	0.0792649	0.081244	0.41025	0.940464	0.612219	0.571815	0.484263	0.715431	0.0566829	0.303529	0.723914	1.01781	0.175793	0.179105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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