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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060720 ID=TCONS_00060720|Name=TCONS_00060720|organism=Clytia hemisphaerica|type=transcript|length=2445bpRun BLAST on NCBI protein sequence of TCONS_00060720-protein >TCONS_00060720-protein ID=TCONS_00060720-protein|Name=TCONS_00060720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp MGRELELDVIIKQLLDVQKTQRQAAITETNIRLLCMKAREVFLEESNLTERun BLAST on NCBI transcript from alignment at scaffold_348:179114..201755- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060720 ID=TCONS_00060720|Name=TCONS_00060720|organism=Clytia hemisphaerica|type=transcript|length=22642bp|location=Sequence derived from alignment at scaffold_348:179114..201755- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_348:179114..201755- >TCONS_00060720 ID=TCONS_00060720|Name=TCONS_00060720|organism=Clytia hemisphaerica|type=CDS|length=9090bp|location=Sequence derived from alignment at scaffold_348:179114..201755- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060720 vs. Swiss-Prot (Human)
Match: PP1A (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1) HSP 1 Score: 376.711 bits (966), Expect = 7.555e-123 Identity = 190/295 (64.41%), Postives = 230/295 (77.97%), Query Frame = 3
Query: 252 ELELDVIIKQLLDVQKTQ--RQAAITETNIRLLCMKAREVFLEESNLTEV------------QFLDLLRHFEQVGFPGSNDNKYIFLGDYVDRGQYSLETIXXXXXXXXXXPKQMFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPMAGVVENTIFCVHGGLSPDFQHLDQIRNFERPSDIPDFGLMNDLLWSDPDEDITGWGENDRGVSWTFGGDIVNSFLKKNNFSLVARAHQVIEDGYQFFQKRKLVTLFSAPNYCGEFDNAGATMFVSDELVCSFSILKP 1094
+L LD II +LL+VQ ++ + +TE IR LC+K+RE+FL + L E+ Q+ DLLR FE GFP ++ Y+FLGDYVDRG+ SLETICLLL YK+KYP+ FLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLP+A +V+ IFC HGGLSPD Q ++QIR RP+D+PD GL+ DLLWSDPD+D+ GWGENDRGVS+TFG ++V FL K++ L+ RAHQV+EDGY+FF KR+LVTLFSAPNYCGEFDNAGA M V + L+CSF ILKP
Sbjct: 6 KLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFP--PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 298 The following BLAST results are available for this feature:
BLAST of TCONS_00060720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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