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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060708 ID=TCONS_00060708|Name=TCONS_00060708|organism=Clytia hemisphaerica|type=transcript|length=3026bpRun BLAST on NCBI protein sequence of TCONS_00060708-protein >TCONS_00060708-protein ID=TCONS_00060708-protein|Name=TCONS_00060708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=775bp MSLLRAGKHKLAIKQICQNVRFLSSGSKVPISHFDNDTYMPYDKMSDNLKRun BLAST on NCBI transcript from alignment at scaffold_348:123504..141214- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060708 ID=TCONS_00060708|Name=TCONS_00060708|organism=Clytia hemisphaerica|type=transcript|length=17711bp|location=Sequence derived from alignment at scaffold_348:123504..141214- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_348:123504..141214- >TCONS_00060708 ID=TCONS_00060708|Name=TCONS_00060708|organism=Clytia hemisphaerica|type=CDS|length=48888bp|location=Sequence derived from alignment at scaffold_348:123504..141214- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060708 vs. Swiss-Prot (Human)
Match: ACON (Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2) HSP 1 Score: 1142.1 bits (2953), Expect = 0.000e+0 Identity = 562/750 (74.93%), Postives = 641/750 (85.47%), Query Frame = 2
Query: 452 LSSGSKVPISHFDNDTYMPYDKMSDNLKIVKDRLGRPLTMSEKVVYSHLDDPKNQDIERGSSYLKLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQLGGDKDLNRAIDINKEVYDFLSSASAKYGVGFWKPGSGIIHQIILENYAFPGCLLIGTDSHTXXXXXXXXXXXXXXXXXXXXXXXXIPWELKCPNVIGVKLTGELSGWTSPKDVILKVADILTVKGGTGAIVEYYGPGVKSISCTGMGTICNMGAEIGATTSIFPFNERMSKYLNSTGRADIAATAEQYQHILQSDEGAEYDQIIEINLSELEPHVNGPFTPDLAHPISKLGANALENGWPTDVKVGLIGSCTNSSYEDMGRSANLAKQALAHGVKAKSIFTITPGSEQIRATIERDGIADTLREFGGVVLANACGPCIGQWDRQDVPKGEKNTIVSSYNRNFTGRNDANPMTHAFVTSPEMVTALSIAGDLRFNPSTDDLVGADGQKFKLESPFADELPVNGFDPGMNTYQAPPSDGGSLKVDVDPQSQRLQLLTPFNTFDGQDLVDMPILIKAKGKCTTDHISMAGPWLKYRGHLDNISNNMLIGAINEENGEANTVKNQFTGEYGAVPDTARQYKAQGIGWVVVGDENYGEGSSREHAALEPRHLGGKAIIVKSFARIHETNLKKQGMLPLTFETASDYDKITPTDRISLLGLKDIAPGKPITCEITHADGGKEQITLLHTMNEGQIGWFKSGSALNKM 2701
L +KV +SHF+ + Y+ YD + N+ IV+ RL RPLT+SEK+VY HLDDP +Q+IERG SYL+LRPDRVAMQDATAQMAMLQFISSGL +VAVPSTIHCDHLIEAQ+GG+KDL RA DIN+EVY+FL++A AKYGVGFWKPGSGIIHQIILENYA+PG LLIGTDSHT NGGGLGG CIGVGGADAVDVMAGIPWELKCP VIGVKLTG LSGW+SPKDVILKVA ILTVKGGTGAIVEY+GPGV SISCTGM TICNMGAEIGATTS+FP+N RM KYL+ TGR DIA A++++ L D G YDQ+IEINLSEL+PH+NGPFTPDLAHP++++G A + GWP D++VGLIGSCTNSSYEDMGRSA +AKQALAHG+K KS FTITPGSEQIRATIERDG A LR+ GG+VLANACGPCIGQWDR+D+ KGEKNTIV+SYNRNFTGRNDANP THAFVTSPE+VTAL+IAG L+FNP TD L G DG+KF+LE+P ADELP FDPG +TYQ PP D VDV P SQRLQLL PF+ +DG+DL D+ ILIK KGKCTTDHIS AGPWLK+RGHLDNISNN+LIGAIN ENG+AN+V+N T E+G VPDTAR YK GI WVV+GDENYGEGSSREHAALEPRHLGG+AII KSFARIHETNLKKQG+LPLTF +DY+KI P D++++ GLKD PGKP+ C I H +G +E I L HT NE QI WF++GSALN+M
Sbjct: 26 LCQRAKVAMSHFEPNEYIHYDLLEKNINIVRKRLNRPLTLSEKIVYGHLDDPASQEIERGKSYLRLRPDRVAMQDATAQMAMLQFISSGLSKVAVPSTIHCDHLIEAQVGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWKPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWSSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREDIANLADEFKDHLVPDPGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVGKVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQILRDLGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDYLTGTDGKKFRLEAPDADELPKGEFDPGQDTYQHPPKDSSGQHVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQEFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFTPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 775 The following BLAST results are available for this feature:
BLAST of TCONS_00060708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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