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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060672 ID=TCONS_00060672|Name=TCONS_00060672|organism=Clytia hemisphaerica|type=transcript|length=4145bpRun BLAST on NCBI protein sequence of TCONS_00060672-protein >TCONS_00060672-protein ID=TCONS_00060672-protein|Name=TCONS_00060672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp MNKIFNNIMRGFHTYNTRRSAVLSKHAAVATSDPTATQVGIQLLQNGGNARun BLAST on NCBI transcript from alignment at scaffold_348:107727..121948- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060672 ID=TCONS_00060672|Name=TCONS_00060672|organism=Clytia hemisphaerica|type=transcript|length=14222bp|location=Sequence derived from alignment at scaffold_348:107727..121948- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_348:107727..121948- >TCONS_00060672 ID=TCONS_00060672|Name=TCONS_00060672|organism=Clytia hemisphaerica|type=CDS|length=13560bp|location=Sequence derived from alignment at scaffold_348:107727..121948- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060672 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 2.137e-21 Identity = 126/562 (22.42%), Postives = 238/562 (42.35%), Query Frame = 2
Query: 1220 HAAVATSDPTATQVGIQLLQNXXXXXXXXXXXXXTLNLVDPGSTGIGGDVFVLFYDAKTKKVKGLNASGRSSSNMSLVYLKAKGISRAQGHIRIPLNSADSVNVPGAAAGWVDTVECFGSGKLSLKEILQPAITLCKEGYPVHEFSAYLQQKNEGVLQRTPHSFPDDMLLNGRAPQHGDVVKNTKLAGIFEKLAAEGKRGFYEGSIAQSIVDAVQGCGGCLTMQDMASH-TNTFDEPISTDYKGIRIWEMP--PNGQGLVALIAFNILK----EMDQIPGDRLSAPYMHRLIEAVHLGFADGFRHIADSAK----PDVLKRLLSDEHAKSKAELIQEEKIASEHYHYPTINSGQN--TVYFSVVDSEGNACSFINSVYNYHGSGIVPKDCG---------FALQSRGGNFSLEEDHPNCVGPNKRSYHTIIPGMATHADTGELFACFGNMGAFMQPQGHVQLMTNLIDHQMDPQLAIDMPRF-NIIYPDNPQTRPTVHIEDGVSQETMDELTRYGHNVKLTTGWDRIMFGRAQIILNKRDTYGNRVLWSGSESRTDGCAMGY 2836
AAVA +++G L++GG+A DAA+ + L++ S GIGG +F+ Y++ T+K + +NA + ++ + +G + SV VPG G+ + G+L + QP+I L ++G+PV + A + V+++ P + + + + G+ + +LA +E LA EG + FY GS+ IV +Q GG +T +D+ ++ + P++ + ++ MP P ++ALI NILK + + HR++EA +A R + K +V++ + S+ A I ++ Y+ P + + T + SVV +G+A S +++ Y GS + G F+ S F + N + P K+ ++ P + D G++ G G + + D + A++ PR N + P+ +E + Q L H+ ++ + + ++ Q I+ + + S+SR G GY
Sbjct: 40 RAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAR-EVAPRLAFATMFNSSEQSQKGGL--------SVAVPGEIRGY--ELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTVIEQQP-VLCEVFCRDRKVLREGERLTLPQLADTYETLAIEGAQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGDVVLY-MPSAPLSGPVLALI-LNILKGYNFSRESVESPEQKGLTYHRIVEAFRFAYAK--RTLLGDPKFVDVTEVVRNMTSEFFAAQLRAQISDDTTHPISYYKPEFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSGILFNNEMDDFSSPSITNEFGVPPSPANFIQPGKQPLSSMCPTIMVGQD-GQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLPN------VTTVERNIDQAVTAALETRHHHTQIASTFIAVV----QAIVRTAGGWA-----AASDSRKGGEPAGY 569 The following BLAST results are available for this feature:
BLAST of TCONS_00060672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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