TCONS_00060667 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060667
Unique Name	TCONS_00060667
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1390

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_348:41980..45813-
coding sequence from alignment at scaffold_348:41980..45813-

transcript sequence

>TCONS_00060667 ID=TCONS_00060667|Name=TCONS_00060667|organism=Clytia hemisphaerica|type=transcript|length=1390bp
gaaaatcattcCCATCTCTAGCATCTTGTGGAGAAAAGGAATAAATAGGG
CATAAGTGAAGAAGAAGCATTCTCTCTTNAATCATTCCCATCTCTAGCAT
CTTGTGGAGAAAAGGAATAAATAGAGCATAAGTGAAAAAGAAGTATTCTC
TCTTGAAAGCAATCATGAGAAGTTTGGCGATTCTTTTGGTCGCTACCATC
ATTGGTCAATCTTACGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGT
CGCTGCAAACACTGACCAATGTGAAAATAAACCATATGGACGATACCAAT
GTATCTGCAAAGAGGGATTCTCTGGTCGCAGATGTGAAACAAaTGACAAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
CGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGgaaaattctgta
aaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGTGGAACC
TGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAA
TGgaaaattctgtaaaaacaacATCGATGATTGCCAAGGTGTCAGATGTC
AAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGC
AAGAATGGATTCAATGgaaaattctgtaaaaacaacATCGATGATTGCCG
AGATGTCAAATGCTTAAACGGTGGAACCTGCGAAGACGGAATCGCTTCTT
TCACTTGCAAATGCAAGAATGGATTCAATGGTAAATTCTGCCAGAACAAC
ATTGATGATTGCCGAGGTGTCACTTGCCAAAATGAAGGAAGCTGCGAAGA
TGGAATCGCTTCTTTCACTTGCAAATGCAAAAACGGATTCAATGGAAAAT
TCTGCCAAAATAACATTGACGATTGCAAGCGCGTCAGATGTCTTAATGGG
GGAACTTGCAAAGATGGGATTGCTTCTTTTACTTGTCAATGCAAGCCTGG
ATTCTCCGGAAAATTCTgtcaagTTCCATCATGTCACCCTAACCCATGTC
AGAatggtggaaaatgtttgaaacatggaaaagccaTCAGATGTTGGTGT
AAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAAGAATGCAA
TTACCACTGCAGCAGCCAGCGTGGATGGTGCCGTATTATGGGAACCGACG
GCCGTATCTATGACAACTATTGTCAATTCGAGCGTGCTCAATGCAAAAAT
AAATCACTTCGAATCAAGAAGAAACTCTGTGGTTACTGgtaaattttgtg
aatattttagACTAGTTTAATTCACAATGAAATTTCAATACTTCGTTAGA
ATTTGAagcttttcagactttttttcaCTCTTTGCGGAAG

Run BLAST on NCBI

protein sequence of TCONS_00060667-protein

>TCONS_00060667-protein ID=TCONS_00060667-protein|Name=TCONS_00060667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
MRSLAILLVATIIGQSYAGYLGCYRKPCVAANTDQCENKPYGRYQCICKE
GFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTCKCKNGFNGKFCKNNID
DCRGVKCLNGGTCEDGIASFTCKCKNGFNGKFCKNNIDDCQGVRCQNGGT
CEDGIASFTCKCKNGFNGKFCKNNIDDCRDVKCLNGGTCEDGIASFTCKC
KNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCKNGFNGKFCQNN
IDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQVPSCHPNPCQNGGK
CLKHGKAIRCWCKQGYEGRFCETSVKECNYHCSSQRGWCRIMGTDGRIYD
NYCQFERAQCKNKSLRIKKKLCGYW

Run BLAST on NCBI

transcript from alignment at scaffold_348:41980..45813-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060667 ID=TCONS_00060667|Name=TCONS_00060667|organism=Clytia hemisphaerica|type=transcript|length=3834bp|location=Sequence derived from alignment at scaffold_348:41980..45813- (Clytia hemisphaerica)
GAAAATCATTCCCATCTCTAGCATCTTGTGGAGAAAAGGAATAAATAGGG
CATAAGTGAAGAAGAAGCATTCTCTCTTNAATCATTCCCATCTCTAGCAT
CTTGTGGAGAAAAGGAATAAATAGAGCATAAGTGAAAAAGAAGTATTCTC
TCTTGAAAGGTAAGTGATTTGGACATTATTTCAATCTAATATTGATTTCA
TTATTTAAAGTGAATTTCATAATTGTCAAGTCAAATTCTCTTTCAGAGAC
AGGTTTATAGGTCCAGCAATCCCTTATAAAGTTTCCATTACTCTAGAAAA
TTTGATTTTTCCAGTTGATGAGAAGAATCTCTTCACTGTATACTGCTTAT
CTTCTGGCACTGAAAATTCAAAAACAAAAAAGGATTTAGCATTTTCTCAA
CTTTTTTATTCAGCAATCATGAGAAGTTTGGCGATTCTTTTGGTCGCTAC
CATCATTGGTCAATCTTACGCAGGTATTGTTTATTGTTGTTATTCAATCT
TATTCAATTTTTCTTTCAAAAATCCGCTCGATTTTCTTAAGACCTTCTAG
GTCCCATTGATATTTTTTGGGGGGTTTAGGGAGGTAATTCAAGGAAATTT
TTCAAAATTATTAAAACTGCAATATTCAATTGTCAAGACATTTGTTATCA
CTAAGGAAAATTTAATGTGTCAAACATTGTAAAACCTGGGAGAGCGGGGT
CAAATCAGTGAATAACATTTCTTCCAACAACCAAGGGATCCTAAGATGTT
ATAGCTTCCATATAAAGACAACTTTGTAAGATTTTCAACGTCTAAAAATT
GTGTATTCTAACGTAACTCCACAATAAGATAACTCGAAAAATAAACTAAT
TCATTACATTTTCTTAAATTTCAGGTTATCTTGGGTGCTATAGGAAACCA
TGCGTCGCTGCAAACACTGACCGATGTGAAAATNAAAAATCGTGTATTCT
AACGTAACTCCACAATAAGATAACTCGAAAAATTAGCTAATTCATTACAT
TTTCTTTAATTTCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCT
GCAAACACTGACCAATGTGAAAATAAACCATATGGACGATACCAATGTAT
CTGCAAAGAGGGATTCTCTGGTCGCAGATGTGAAACAAGTAAGTCACCTT
GCTTTATGGATGAGCTGTGAAGTGTTTGAATTCTATGATACACATGAATT
AAAAAGATTATTATAGTTTATGTATCGGATGTCAAACAATTACGTCATTC
CTTATTTACACAAAAATTATTTTAGCTCTGGTTTCTAATTGTTATTGTGA
ATTATGAAGTGGGCAGAAAGTTTGCTAACTTTGTGTCTGCTCTAATAATA
AGAATAAATAGGTCAGAATGTCACCATGCCAGTGTGGTGAATATAAGAAC
AGATTTCTATGTTTTATTCAAAGAAATTTAAAACCTTACGGCGAGTCTTT
CAAAGGGGTNGATTTCTATGTTTTTTTCAAAGAAATTTAAAACCTTACGG
CGAGTCTTTCAAAGGGGTCATCAGACAGTTTGATATTTTTTCTGGCCTGT
AAAATCATTCCCACAATCCTGAACGAAAGCTCTGAATCCCGGGGGAGGAT
ACTTAGACAAATGGAGTGTCTAGTATTTGGCGCCCTTAACAATACCATAA
TTGGATTTCCAAAGTCCCGGTAAGGGTAGGAAAAAAGTAATATAATATTT
TAGTAAAATAGTCAGAACCTTTTATCTTTCTTTCTTCTATCATAACATTA
TCAGCTGTAGTCAATGTGTTAGACATGATGTTTTGTCTTATTGCTAATGT
TTTAAAATGATTTAATACTTTGGGTTTTTTTTTCTGAAATAGATGACAAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
TGCTTCCTTCACTTGCAAATGCAAACGTGGATTCAATGGAAAATTCTGTA
AGAACAACATCGATGATTGCCGAGATGTCAAATGCTTAAACGGAGGAACC
TGCGAAGATGGAATTGCTTCTTTCACTTGCAAATGCAAGAACGGATTCAA
TGGAGAATTCTGTAAAAACAACATCGATGATTGCCAAGGTGTCAAATGCT
TAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGC
AAACGTGGATTCAATGGAGAATTCTGTAAAAACAACATCGATGATTGCCG
AGGTGTGAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATTGCTTCTT
TCACTTGCAAATGCAAGAACGGATTCAATGGAGAATTCTGTAAAAACAAC
ATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGA
CGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGAAAAT
TCTGTAAAAACAACATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGT
GGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGG
ATTCAATGGAAAATTCTGTAAAAACAACATCGATGATTGCCAAGGTGTCA
GATGTCAAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGC
AAATGCAAGAATGGATTCAATGGAAAATTCTGTAAAAACAACATCGATGA
TTGCCGAGATGTCAAATGCTTAAACGGTGGAACCTGCGAAGACGGAATCG
CTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGTAAATTCTGCCAG
AACAACATTGATGATTGCCGAGGTGTCACTTGCCAAAATGAAGGAAGCTG
CGAAGATGGAATCGCTTCTTTCACTTGCAAATGCAAAAACGGATTCAATG
GAAAATTCTGCCAAAATAACATTGACGATTGCAAGCGCGTCAGATGTCTT
AATGGGGGAACTTGCAAAGATGGGATTGCTTCTTTTACTTGTCAATGCAA
GCCTGGATTCTCCGGAAAATTCTGTCAAGGTTTGTTTTTTCATATTGTTA
CCAATATTTTTTTGCTCCAAGTCATCTTGAAATATTAAAAGCAAATTCAA
TGGTTGATAAAAAATGAAGCAAAACTTGTAACTCGGAACCCATTATTTAA
TGTACCAAGAGACCCGGAAATTGTTTTATTTCCTATGCCGCTATACAAAT
TCTTGTTGAAAGTTGTATTTCCCGAAATCAGTTCTTTTAAGTGATTTATT
GCAATTTGTTTTTCTTCGCCAGTTCCATCATGTCACCCTAACCCATGTCA
GAATGGTGGAAAATGTTTGAAACATGGAAAAGCCATCAGATGTTGGTGTA
AACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAAGGTAACATT
TAAAATATCAAAAAATCATTTCCTTTCGATGATTAAAGTTGCAATTAAAA
TACAACAATTTTAATTTTGAAAATTTTTCTTAAAAAATCTTATTTGAGAA
AATGTCGGAATTCTTTGGAATTCTTTTTCTTTGCTCTTACAAAATCATTG
GAAATCAACTATTTAGAGGCTGTATTAACAATTACTTTACGAAGTACTGA
AATACATAATAAAGTTAACAAATCTTTCATTTGCCAGAATGCAATTACCA
CTGCAGCAGCCAGCGTGGATGGTGCCGTATTATGGGAACCGACGGCCGTA
TCTATGACAACTATTGTCAATTCGAGCGTGCTCAATGCAAAAATAAATCA
CTTCGAATCAAGAAGAAACTCTGTGGTTACTGGTAAATTTTGTGAATATT
TTAGACTAGTTTAATTCACAATGAAATTTCAATACTTCGTTAGAATTTGA
AGCTTTTCAGACTTTTTTTCACTCTTTGCGGAAG

Coding sequence (CDS) from alignment at scaffold_348:41980..45813-

>TCONS_00060667 ID=TCONS_00060667|Name=TCONS_00060667|organism=Clytia hemisphaerica|type=CDS|length=6768bp|location=Sequence derived from alignment at scaffold_348:41980..45813- (Clytia hemisphaerica)
AATGCAATTACCACTGCAGCAGCCAGCGTGGATGGTGCCGTATTATGGGA
ACCGACGGCCGTATCTATGACAACTATTGTCAATTCGAGCGTGCTCAATG
CAAAAATAAATCACTTCGAATCAAGAAGAAACTCTGTGGTTACTGGTAAT
TCCATCATGTCACCCTAACCCATGTCAGAATGGTGGAAAATGTTTGAAAC
ATGGAAAAGCCATCAGATGTTGGTGTAAACAAGGCTATGAAGGAAGATTC
TGTGAAACAAGTGTCAAAGGTGTCAAATGCTTAAACGGAGGAACCTGCGA
AGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGAA
AATTCTGTAAAAACAACATCGATGATTGCCGAGGTGTCAAATGCTTAAAC
GGTGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAA
TGGATTCAATGGAAAATTCTGTAAAAACAACATCGATGATTGCCAAGGTG
TCAGATGTCAAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACT
TGCAAATGCAAGAATGGATTCAATGGAAAATTCTGTAAAAACAACATCGA
TGATTGCCGAGATGTCAAATGCTTAAACGGTGGAACCTGCGAAGACGGAA
TCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGTAAATTCTGC
CAGAACAACATTGATGATTGCCGAGGTGTCACTTGCCAAAATGAAGGAAG
CTGCGAAGATGGAATCGCTTCTTTCACTTGCAAATGCAAAAACGGATTCA
ATGGAAAATTCTGCCAAAATAACATTGACGATTGCAAGCGCGTCAGATGT
CTTAATGGGGGAACTTGCAAAGATGGGATTGCTTCTTTTACTTGTCAATG
CAAGCCTGGATTCTCCGGAAAATTCTGTCAAGATGACAATGATTGCCGAG
GTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTGACCAA
TGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAGGGATT
CTCTGGTCGCAGATGTGAAACAAATGAGAAGTTTGGCGATTCTTTTGGTC
GCTACCATCATTGGTCAATCTTACGCAGAATGCAATTACCACTGCAGCAG
CCAGCGTGGATGGTGCCGTATTATGGGAACCGACGGCCGTATCTATGACA
ACTATTGTCAATTCGAGCGTGCTCAATGCAAAAATAAATCACTTCGAATC
AAGAAGAAACTCTGTGGTTACTGGTAATTCCATCATGTCACCCTAACCCA
TGTCAGAATGGTGGAAAATGTTTGAAACATGGAAAAGCCATCAGATGTTG
GTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAAGGTG
TCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACT
TGCAAATGCAAGAATGGATTCAATGGAAAATTCTGTAAAAACAACATCGA
TGATTGCCGAGGTGTCAAATGCTTAAACGGTGGAACCTGCGAAGACGGAA
TCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGAAAATTCTGT
AAAAACAACATCGATGATTGCCAAGGTGTCAGATGTCAAAACGGAGGAAC
CTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCA
ATGGAAAATTCTGTAAAAACAACATCGATGATTGCCGAGATGTCAAATGC
TTAAACGGTGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATG
CAAGAATGGATTCAATGGTAAATTCTGCCAGAACAACATTGATGATTGCC
GAGGTGTCACTTGCCAAAATGAAGGAAGCTGCGAAGATGGAATCGCTTCT
TTCACTTGCAAATGCAAAAACGGATTCAATGGAAAATTCTGCCAAAATAA
CATTGACGATTGCAAGCGCGTCAGATGTCTTAATGGGGGAACTTGCAAAG
ATGGGATTGCTTCTTTTACTTGTCAATGCAAGCCTGGATTCTCCGGAAAA
TTCTGTCAAGATGACAATGATTGCCGAGGTTATCTTGGGTGCTATAGGAA
ACCATGCGTCGCTGCAAACACTGACCAATGTGAAAATAAACCATATGGAC
GATACCAATGTATCTGCAAAGAGGGATTCTCTGGTCGCAGATGTGAAACA
AATGAGAAGTTTGGCGATTCTTTTGGTCGCTACCATCATTGGTCAATCTT
ACGCAGAATGCAATTACCACTGCAGCAGCCAGCGTGGATGGTGCCGTATT
ATGGGAACCGACGGCCGTATCTATGACAACTATTGTCAATTCGAGCGTGC
TCAATGCAAAAATAAATCACTTCGAATCAAGAAGAAACTCTGTGGTTACT
GGTAATTCCATCATGTCACCCTAACCCATGTCAGAATGGTGGAAAATGTT
TGAAACATGGAAAAGCCATCAGATGTTGGTGTAAACAAGGCTATGAAGGA
AGATTCTGTGAAACAAGTGTCAAAGGTGTCAAATGCTTAAACGGAGGAAC
CTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCA
ATGGAAAATTCTGTAAAAACAACATCGATGATTGCCGAGGTGTCAAATGC
TTAAACGGTGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATG
CAAGAATGGATTCAATGGAAAATTCTGTAAAAACAACATCGATGATTGCC
AAGGTGTCAGATGTCAAAACGGAGGAACCTGCGAAGACGGAATCGCTTCT
TTCACTTGCAAATGCAAGAATGGATTCAATGGAAAATTCTGTAAAAACAA
CATCGATGATTGCCGAGATGTCAAATGCTTAAACGGTGGAACCTGCGAAG
ACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGTAAA
TTCTGCCAGAACAACATTGATGATTGCCGAGGTGTCACTTGCCAAAATGA
AGGAAGCTGCGAAGATGGAATCGCTTCTTTCACTTGCAAATGCAAAAACG
GATTCAATGGAAAATTCTGCCAAAATAACATTGACGATTGCAAGCGCGTC
AGATGTCTTAATGGGGGAACTTGCAAAGATGGGATTGCTTCTTTTACTTG
TCAATGCAAGCCTGGATTCTCCGGAAAATTCTGTCAAGATGACAATGATT
GCCGAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACT
GACCAATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGA
GGGATTCTCTGGTCGCAGATGTGAAACAAATGAGAAGTTTGGCGATTCTT
TTGGTCGCTACCATCATTGGTCAATCTTACGCAGAATGCAATTACCACTG
CAGCAGCCAGCGTGGATGGTGCCGTATTATGGGAACCGACGGCCGTATCT
ATGACAACTATTGTCAATTCGAGCGTGCTCAATGCAAAAATAAATCACTT
CGAATCAAGAAGAAACTCTGTGGTTACTGGTAATTCCATCATGTCACCCT
AACCCATGTCAGAATGGTGGAAAATGTTTGAAACATGGAAAAGCCATCAG
ATGTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCA
AAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCT
TTCACTTGCAAATGCAAGAATGGATTCAATGGAAAATTCTGTAAAAACAA
CATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGTGGAACCTGCGAAG
ACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGAAAA
TTCTGTAAAAACAACATCGATGATTGCCAAGGTGTCAGATGTCAAAACGG
AGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATG
GATTCAATGGAAAATTCTGTAAAAACAACATCGATGATTGCCGAGATGTC
AAATGCTTAAACGGTGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTG
CAAATGCAAGAATGGATTCAATGGTAAATTCTGCCAGAACAACATTGATG
ATTGCCGAGGTGTCACTTGCCAAAATGAAGGAAGCTGCGAAGATGGAATC
GCTTCTTTCACTTGCAAATGCAAAAACGGATTCAATGGAAAATTCTGCCA
AAATAACATTGACGATTGCAAGCGCGTCAGATGTCTTAATGGGGGAACTT
GCAAAGATGGGATTGCTTCTTTTACTTGTCAATGCAAGCCTGGATTCTCC
GGAAAATTCTGTCAAGATGACAATGATTGCCGAGGTTATCTTGGGTGCTA
TAGGAAACCATGCGTCGCTGCAAACACTGACCAATGTGAAAATAAACCAT
ATGGACGATACCAATGTATCTGCAAAGAGGGATTCTCTGGTCGCAGATGT
GAAACAAATGAGAAGTTTGGCGATTCTTTTGGTCGCTACCATCATTGGTC
AATCTTACGCAGAATGCAATTACCACTGCAGCAGCCAGCGTGGATGGTGC
CGTATTATGGGAACCGACGGCCGTATCTATGACAACTATTGTCAATTCGA
GCGTGCTCAATGCAAAAATAAATCACTTCGAATCAAGAAGAAACTCTGTG
GTTACTGGTAATTCCATCATGTCACCCTAACCCATGTCAGAATGGTGGAA
AATGTTTGAAACATGGAAAAGCCATCAGATGTTGGTGTAAACAAGGCTAT
GAAGGAAGATTCTGTGAAACAAGTGTCAAAGGTGTCAAATGCTTAAACGG
AGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATG
GATTCAATGGAAAATTCTGTAAAAACAACATCGATGATTGCCGAGGTGTC
AAATGCTTAAACGGTGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTG
CAAATGCAAGAATGGATTCAATGGAAAATTCTGTAAAAACAACATCGATG
ATTGCCAAGGTGTCAGATGTCAAAACGGAGGAACCTGCGAAGACGGAATC
GCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGAAAATTCTGTAA
AAACAACATCGATGATTGCCGAGATGTCAAATGCTTAAACGGTGGAACCT
GCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAAT
GGTAAATTCTGCCAGAACAACATTGATGATTGCCGAGGTGTCACTTGCCA
AAATGAAGGAAGCTGCGAAGATGGAATCGCTTCTTTCACTTGCAAATGCA
AAAACGGATTCAATGGAAAATTCTGCCAAAATAACATTGACGATTGCAAG
CGCGTCAGATGTCTTAATGGGGGAACTTGCAAAGATGGGATTGCTTCTTT
TACTTGTCAATGCAAGCCTGGATTCTCCGGAAAATTCTGTCAAGATGACA
ATGATTGCCGAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCA
AACACTGACCAATGTGAAAATAAACCATATGGACGATACCAATGTATCTG
CAAAGAGGGATTCTCTGGTCGCAGATGTGAAACAAATGAGAAGTTTGGCG
ATTCTTTTGGTCGCTACCATCATTGGTCAATCTTACGCAGAATGCAATTA
CCACTGCAGCAGCCAGCGTGGATGGTGCCGTATTATGGGAACCGACGGCC
GTATCTATGACAACTATTGTCAATTCGAGCGTGCTCAATGCAAAAATAAA
TCACTTCGAATCAAGAAGAAACTCTGTGGTTACTGGTAATTCCATCATGT
CACCCTAACCCATGTCAGAATGGTGGAAAATGTTTGAAACATGGAAAAGC
CATCAGATGTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAA
GTGTCAAAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATC
GCTTCTTTCACTTGCAAATGCAAGAATGGATTCAATGGAAAATTCTGTAA
AAACAACATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGTGGAACCT
GCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAAT
GGAAAATTCTGTAAAAACAACATCGATGATTGCCAAGGTGTCAGATGTCA
AAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCA
AGAATGGATTCAATGGAAAATTCTGTAAAAACAACATCGATGATTGCCGA
GATGTCAAATGCTTAAACGGTGGAACCTGCGAAGACGGAATCGCTTCTTT
CACTTGCAAATGCAAGAATGGATTCAATGGTAAATTCTGCCAGAACAACA
TTGATGATTGCCGAGGTGTCACTTGCCAAAATGAAGGAAGCTGCGAAGAT
GGAATCGCTTCTTTCACTTGCAAATGCAAAAACGGATTCAATGGAAAATT
CTGCCAAAATAACATTGACGATTGCAAGCGCGTCAGATGTCTTAATGGGG
GAACTTGCAAAGATGGGATTGCTTCTTTTACTTGTCAATGCAAGCCTGGA
TTCTCCGGAAAATTCTGTCAAGATGACAATGATTGCCGAGGTTATCTTGG
GTGCTATAGGAAACCATGCGTCGCTGCAAACACTGACCAATGTGAAAATA
AACCATATGGACGATACCAATGTATCTGCAAAGAGGGATTCTCTGGTCGC
AGATGTGAAACAAATGAGAAGTTTGGCGATTCTTTTGGTCGCTACCATCA
TTGGTCAATCTTACGCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038148	XLOC_038148	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060667-protein	TCONS_00060667-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_348	supercontig	scaffold_348:41980..45813 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.632287	0.61867	0.235562	0.285798	0.12174	0.0652518	0.602019	2.2427	401.271	89.7351	0.473409	0.224577	0.189668	0.113858	0	0	0	0	0.348437	0.423632	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000742	EGF-like_dom
IPR001881	EGF-like_Ca-bd_dom
IPR013032	EGF-like_CS
IPR000152	EGF-type_Asp/Asn_hydroxyl_site
IPR018097	EGF_Ca-bd_CS
IPR009030	Growth_fac_rcpt_
IPR002350	Kazal_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00060667 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4)

HSP 1 Score: 179.874 bits (455), Expect = 7.046e-48
Identity = 130/311 (41.80%), Postives = 178/311 (57.23%), Query Frame = 3

Query:  231 CYRKPCVAANTDQCENKPYGRYQCICKEGFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTC--EDGIASFTXXXXXXXXXXXXXXXIDDCQGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGGKCLKHGKAIRCWCKQGYEGRFCETSVKECN 1151
            C   PCV   T  C++   G Y C C+EGFSG  C+TN N+C    CLN GTC D +A + C C   + G  C+  +  C    C NGG C   +   SF+C C  G+ G+ C+ +I++C    C++G +C++    + C C+ G++G+ C+ +IDDCR   C NGG+C DGI +  C C  GF G FC+ +I++C    C+N  +C D + S+TC C  GF+G  C+NN  DC    C NGGTC DGI SFTC C PGF+G +CQ  V  C   PC +GG C     + RC C QGY G  C+  V  C+
Sbjct:  757 CESNPCVNGGT--CKDMTSG-YVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCD 1064

HSP 2 Score: 163.31 bits (412), Expect = 2.534e-42
Identity = 118/311 (37.94%), Postives = 176/311 (56.59%), Query Frame = 3

Query:  255 ANTDQCENKP--YGR-------YQCICKEGFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCQGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQV--PSCHPNPCQNGGKCLKHG--KAIRCWCKQGYEGRFCETSVKEC 1148
             + D+C+  P  YG        + C+C+ G++G  CETN N+C    C +GGTC+D   ++ C C  G  G  C+ N+DDC    C + GTC D I  + C C+ G+ G  C  NID+C G  C NGGTCEDGI  FTC+C  G++   C + +++C    C++G  C D +  + C C  G++G  C  N ++C    C N G+C+D  + + C C+ GF+G  CQ NI++C    CLN GTC D +A + C C   ++G  C+V    C P+PC+NGG+C +    ++  C C  G++G+ CE  + EC
Sbjct:  565 VDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGA-CRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINEC 873

HSP 3 Score: 157.532 bits (397), Expect = 1.816e-40
Identity = 122/331 (36.86%), Postives = 174/331 (52.57%), Query Frame = 3

Query:  285 YGRYQCICKEGFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCQGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQV--PSCHPNPCQNGGKCLKHGKAIRCWCKQGYEGRFCETSVKECN---------------YHCSSQRGWCRIMGTDGRIYDNYCQ 1226
             G ++C C +G++G RCE + N+C    C N  TC D I  F C C  G+ G  C+ N D+C    CL+ G C D I  F C+C  GF G  C+ ++D+C    C+NG  C DG  ++TC C  G+ G  C+ +ID+C    C + G+C+DG+A+FTC C+ G+ G  C+ NI++C    C++ G+C+D   ++ C C  G  G  C+ N+DDC    C + GTC D I  + C C+PG++G  C +    C  NPC NGG C        C C +GY    C + V ECN               Y C    GW    GT+  I +N C+
Sbjct:  433 LGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPC-HYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGACRDSLNGYKCDCDPGW---SGTNCDINNNECE 758

HSP 4 Score: 152.525 bits (384), Expect = 7.562e-39
Identity = 118/303 (38.94%), Postives = 167/303 (55.12%), Query Frame = 3

Query:  288 GRYQCICKEGFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCQGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFC--QVPSCHPNPCQNGGKCLKHGKAIRCWCKQGYEGRFCETSVKECNYHCSSQRGWCRIM 1190
            G +QCIC  G+ G  CE N ++C    CL+ G C D I  F C+C  GF G  C+ ++D+C    C NG  C DG  ++TC C  G+ G  C+ +ID+C    C  G +C+DG+A+FTC C+ G+ G  C+ NI++C    C +GGTC+D   ++ C C  G  G  C+ N+DDC    C + G+C D I  + C C+ G+ G  C  NID+C    C NGGTC+DGI  FTC+C  G+    C  +V  C+ NPC +G  C       +C C  G+ G  C+ +  EC  +     G C+ M
Sbjct:  472 GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYG-SCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGA-CRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDM 771

HSP 5 Score: 137.117 bits (344), Expect = 6.429e-34
Identity = 112/324 (34.57%), Postives = 158/324 (48.77%), Query Frame = 3

Query:  231 CYRKPCVAANTDQCENKPYGRYQCICKEGFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTX--XXXXXXXXXXXXXXIDDCQ--GVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQV--PSCHPNPCQNGGKCLKHGKAIRCWCKQGYEGRFCETSVKECNYHCSSQRGWCR 1184
            C   P    N   C N  +G Y C+C  G++G  C  N +DC    C +G TC D +ASF C+C +G  G  C  N D C    C  G  C+    +      C +G+ G  C  ++D+C      C++ G C + + SF C+C  G+ G  C+ ++++C    C N  TC D I  F C C  G+ G  C+ N D+C    C + G C D I  F C+C  GF G  CQ ++D+C    C NG  C DG  ++TC C  G++G  C+V    C P+PC   G C        C C+ GY G  CET++ EC+       G C+
Sbjct:  299 CQLMPNACQNGGTCHNT-HGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLN-DACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHY-GSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQ 619

HSP 6 Score: 135.191 bits (339), Expect = 2.577e-33
Identity = 118/345 (34.20%), Postives = 173/345 (50.14%), Query Frame = 3

Query:  294 YQCICKEGFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDC------QGV----RCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCKNGFNGKFCQNNIDDC--------KRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGG--KCLKHGKAIRCWCKQGYEGRFCETSVKECNYHCSSQRGWCRIMGTDGRIYDNYCQ--FERAQCKNKS 1256
            + C+C  GF+G  C+ + N+C    CL+GGTC+DG  S+ C C  G+ G  C+N +  C    C NGG C      + C+C +G+ G +C      C      QGV     CQ+GG C D   +  C+C+ G+ G +C++ +D+C    C NG TC D +  ++CKC  G++G  C   ID+C    CQN G+C D   ++ C C  G  G  C+ N+DDC        +  +C N GTC D +  ++C C PGF G+ C+  V  C  NPC   G   C++      C C+ G+ GR CE+ +  C        G C +     R +   C   FE A C+N +
Sbjct: 1005 FTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDA 1349

HSP 7 Score: 125.946 bits (315), Expect = 2.370e-30
Identity = 117/357 (32.77%), Postives = 155/357 (43.42%), Query Frame = 3

Query:  231 CYRKPCVAANT-DQCENKPYGRYQCICKEGFSGRRCETN-DNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDC--QGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGTCED-GIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIASFTCKCK----------------------------------------NGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQV-PSCHPNPCQNGGKC---LKHGKAIRCWCKQGYEGRFCETSVKECNY 1154
            C   PC  A T    + +    Y C C  GFSG  C T  DN C    C NGGTC+    +                  D C    C NGG C    AS+ C C   F+G  C+ ++++C  +   C++GGTC + + S+ C C+    G  C+     C    C NGGTC   G  +  C C  GF G+ C+ NIDDC G  C+N G+C DG+ ++ C+C                                         NG+ G+ C  NIDDC    C +G TC D +ASF C+C  G +G  C +  +C  NPC  G  C     +GKAI C C  GY G  C   V EC+ 
Sbjct:   63 CLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAI-CTCPSGYTGPACSQDVDECSL 418

HSP 8 Score: 125.176 bits (313), Expect = 3.885e-30
Identity = 110/300 (36.67%), Postives = 156/300 (52.00%), Query Frame = 3

Query:  294 YQCICKEGFSGRRCETNDNDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDC--------QGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRDVKCLNGGT--CEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCEDGIAS-----FTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQVPSCHP----NPCQNGGKCLKHGKA--IRCWCKQGYEGRFCE 1130
            + C C+ G++G  CE   ++C    C NG TC D +  ++CKC  G++G  C   ID+C    C NGGTC D   ++ C C  G  G  C+ N+DDC        +  +C N GTC D +  ++C C  GF G+ C+ ++++C    C   GT  C   +  F C+C+ G  G+ C++ I+ C+G  C+N G+C   +AS     F CKC  GF G  C+N+   C  +RCLNGGTC  G  S TC C   F+G  CQ P+  P    NPC N G C    ++   RC C   + G  C 
Sbjct: 1129 HHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTC--AVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCISGPRSPTCLCLGPFTGPECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNGLLCH 1426

HSP 9 Score: 116.316 bits (290), Expect = 2.469e-27
Identity = 101/299 (33.78%), Postives = 141/299 (47.16%), Query Frame = 3

Query:  288 GRYQCICKEGFSGRRCETNDNDCRGVKCLNGGTCE----DGIASFTXXXXXXXXXXXXXXXIDD-CRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCQGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDC--RDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCED-GIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFC--QVPSCH--PNPCQNGGKCLKHGKAIRCWCKQGYEGRFCETSVKEC 1148
            G   C+C   F G RC+ + N C    C N GTC      G+A + C C  GF+G  C   +D+ C    C NGGTC+    +                  D C    C NGG C    AS+ C C   F+G  C+ ++++C  +   C +GGTC + + S+ C C+    G  C+     C    CQN G+C   G  +  C C  GF G+ C+ NIDDC    C NGG C DG+ ++ C+C P ++G++C   V  C   PN CQNGG C        C C  G+ G  C  ++ +C
Sbjct:   42 GTEACVCGGAFVGPRCQ-DPNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDC 339

HSP 10 Score: 110.153 bits (274), Expect = 2.422e-25
Identity = 105/309 (33.98%), Postives = 158/309 (51.13%), Query Frame = 3

Query:  285 YGRYQCICKEGFSGRRCETNDNDC------RGVK----CLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCQGVRCQNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDC--------RDVKCLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGS--CEDGIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIAS-----FTCQCKPGFSGKFCQ--VPSCHPNPCQNGGKCLKHGKAIRCWCKQGYEGRFCE 1130
            + +Y+C C  G++G  C+     C      +GV     C +GG C D   +  C+C+ G+ G +C++ +D+C    C NG TC D +  ++CKC  G++G  C   ID+C    CQNGGTC D   ++ C C  G  G  C+ N+DDC        R  KC N GTC D +  ++C C  GF G+ C+ ++++C    C   G+  C   +  F C+C+ G  G+ C++ I+ CK   C NGGTC   +AS     F C+C  GF G  C+    +C    C NGG C+   ++  C C   + G  C+
Sbjct: 1078 HTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTC--AVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCISGPRSPTCLCLGPFTGPECQ 1384

HSP 11 Score: 95.9005 bits (237), Expect = 1.080e-20
Identity = 64/169 (37.87%), Postives = 82/169 (48.52%), Query Frame = 3

Query:  711 CLNGGTCEDGIASFTCKCKNGFNGKFCQNNIDDCRGVTCQNEGSCE----DGIASFTCKCKNGFNGKFCQNNIDD-CKRVRCLNGGTCKD-GIASFTCQCKPGFSGKFCQ-VPSCHPNPCQNGGKCLKHGKAIRCWCKQGYEGRFCETSVKECNYHCSSQRGWCRIMGT 1196
            CLNGG CE    +  C C   F G  CQ+  + C    C+N G+C      G+A + C C  GF+G  C   +D+ C    C NGGTC    +  + C+C PG+SGK CQ    C  NPC NGG+CL    +  C C   + G  C   V E    C  + G CR  GT
Sbjct:   31 CLNGGKCEAANGTEACVCGGAFVGPRCQD-PNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNE----CGQKPGLCRHGGT 194

HSP 12 Score: 84.7297 bits (208), Expect = 3.505e-17
Identity = 60/178 (33.71%), Postives = 82/178 (46.07%), Query Frame = 3

Query:  690 DDCRDVKCLNGGTCE----DGIASFTCKCKNGFNGKFCQNNIDD-CRGVTCQNEGSCED-GIASFTCKCKNGFNGKFCQNNIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSC--HPNPCQNGGKCLKHGKAIRCWCKQGYEGRFCETSVKECNYHCSSQRGWCRIMG 1193
            + C    C N GTC      G+A + C C  GF+G  C   +D+ C    C+N G+C+   +  + C+C  G++GK CQ   D C    C NGG C    AS+ C C P F G  C+  V  C   P  C++GG C     + RC C+  + G  CE     C+       G CR  G
Sbjct:   61 NPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQ-ADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTG 237

The following BLAST results are available for this feature:

BLAST of TCONS_00060667 vs. Swiss-Prot (Human)

BLAST of TCONS_00060667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOTC1	7.046e-48	41.80	Neurogenic locus notch homolog protein 1 OS=Homo s...	[more]

You are here

TCONS_00060667 (transcript) - C. hemisphaerica