TCONS_00060659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060659
Unique NameTCONS_00060659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060659 ID=TCONS_00060659|Name=TCONS_00060659|organism=Clytia hemisphaerica|type=transcript|length=1511bp
CTCCTCCTCTGGCAGCTCActagagaaataaaaaaatcatggagGTCTTT
ACAAAACAAAGGCATCATTTGATGAAGAAATTATTGGATGCTGTAAAACA
GgcAAGTGACTCAAAAAATGATTCCAGAAATTGATGATAATAATTATTGG
GGTGTTGTGAAAGAAGTCTTATCTCCACTTGACGTCAAACACATTGAATC
TTGTGAGGGAGTCACAACAGATACTGGAAAAGCACGTGTTTGGCTAAGAC
AAGCTTTGAACGAGCACAGTTTGGAACGTCATCTCAACGCAATGTTAGCC
AATGGAAACTTGCTTAGGAACTACTACGAATCATGGGCACTCGTTTTGGA
TGAAGAAGTTGCAAGCAATCTACCAGTCATGGCTAGAGgtttaagttcaa
ttatttttgcTTTGGAAATTAATGGAGAAGATCTTAACAAGCCTTTTCAG
CCATTAGTATTCCCAACGACAGAGAAAACACACAGAAGGGTCAATTCAAA
TCCGCTTCCTGTTTTCGCTGGTTTTGACACAGAGCcaaatattgtcaaaa
aaatcaagaagaagAAGCGAAAAGTAGTAGAAGCAACTATAAACGATTTA
GAAGAAATTCCAGACGAACATTCATTATCTCAATCATATACTACCAATAG
TTCACTAGAAAATCTTatattacaaagtaaacaagacgACGATCGAATAT
TATCTCCACAATCTGGAGCTAGCAGTGATAGAAGTTCAACTAAAGACTTT
GAAACGCTTAGTGGGCGTGCGTTAGAAACACGATCAGCTCCTGTGTCCCC
TGTACCCTTATCTTATGGAGATAATACTAACACAGAGAATCTATCTTCTG
CTGACAGTCCTACTCCAAATGACAGAGTTTCCTcgcaaaaatcaatttca
aaagaCAATACGAAAAGAAATTCATCAGACAATCTAACTAGTGAACCAAC
GgaagaaaatacaaaacaaactgAAAATACAATCGCAAATATTAATAATA
CGACGAAATTACAGGACAAGCTAAAAGACACTCCTGTCTTACAAAATGAC
AAGACGAATGGACTTCGTAAGACTGGGTTCGATAATGTTACAACTTCATC
CAATAAAAACTTCTCAAACGCGTTGACTTTAGAATCCAATTCAATCGACA
TTCTTCAAAAAGAGAAAGATAACTTAATAGATGAGAATCCTCTTCCTAAA
GATAACTTAACAACAAATCATTCTAACgaacctaaaaatatttcttatgg
ACTTCAAAAATCTTCATCAGTTATTACTAAAGAAAACCACGGTGGTGCTA
GATCAAGGACTTCTAAACTAATACCGGATGATAATATATTAACTGAAGCG
AAAAATACAATTTCTAAAACGCCATCTTATAACGACTCTACAACGGACAA
TACAAATGTATTAGATTTGAATGCACCACAAGTGAAAAGTACTCCTTTGG
AGATTAACAATCAACTGCATTGTGGAGCAATCATTGCTGGCGATTCTGAA
GACGCTGATAG
Run BLAST on NCBI

transcript from alignment at scaffold_348:499634..513678+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060659 ID=TCONS_00060659|Name=TCONS_00060659|organism=Clytia hemisphaerica|type=transcript|length=14045bp|location=Sequence derived from alignment at scaffold_348:499634..513678+ (Clytia hemisphaerica)
CTCCTCCTCTGGCAGCTCActagagaaataaaaaaatcatggagGTCTTT
ACAAAACAAAGGCATCATTTGATGAAGAAATTATTGGATGCTGTAAAACA
GGTGagtccaaaaaaaattagctAGTTATTATGTATGATATTTTTTCAGA
TTCAGTCTCATCTcgttaggggtcactcacatatcgatgtttcctgcaac
taacgtcattgtgacgcgagggggtgggggggggggggggggggggcgtt
tcaGAGCCtatgacgctaagaaatttcaacAGAATATCGATTTTCAAACC
TGTAACACATTTTGTATTCCATCCTTCACACCTGCCAtctgcgtttgcgt
agggtaaaatggcgcaATGCGacaatcgaatttggcaaaaaatttttgaa
aatgagcctacaagatttgactatatctttttattccatggaAGAGATta
cattcaaataaaaaatgtattgacaatgaatgggtaagatttctagaaat
ccaaacataaattgcatagcttttaccaaaaaatagcactttaggatcag
aaaccggcaggtacaaaatgcataaaacataatgcatattgcattgcaat
ttacagaacgattttatattctctgaaactctcctttgcagaggctaaaa
ccgcgaaaacctctttagaagagtcCCTTATATtataaacattccaatca
gagggatttccccagacataatatttacttttcgaatccgaacagatccg
aacgaaaaagaaaatattcgaatcataacaacataGGGTTTTCcatcagc
ataaataataataagatgcaacagatcagataaaaaaacaacataaacat
tcgaatgtaaaaagattcgaagtctattttctttgatctagcttccggat
gaagctctttaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNccccgttcatttgccaggatgtgcctgactgttgGTAGTAAACAAA
AAACCCCTGCTGGTCTGGAAAACAGCCAAAATTTTTTGGGGCTTTACCAC
CCATCAGCCTAAAAACCAAGATTTTTACCAAAATTcctaagaaaatgaaa
gaatttaggTGAAAAAGAGCCTGATTCCCAAAATTTAGTCAATGCAATTA
TTTTAGATCTctggtttgcaaaaaaaagtctttttcGAAAAACGAGTTGT
GAAAAAGTTGTAAAGGGGGGGGGCATTATAGAGACTAGCGAAAGCCTATG
TTTATTCTTTAAAATGATGGCATTTCATTGTGATTAAaggattgaaataa
aatttgattgtTCGAGCACAATCCCCGAATCTGgaaaaattgacgtttta
aaataatattcttcaatacaccgtttaggagtgtcgactgcgcacgcgtc
aatccaattttccattgttttgattttagcgataacggaaaattcactct
cctccgtaaaaaaatggtaggtaaacatctggttctcataagaaaacata
gcagaaaaacggtaggtaaagaactccttttaatcataacttcttttcct
cttgatgaatttttgtgaaattttcaggagagacttataaaattatcatt
gatatcatgttcaaatatctaaatcattctctttaaaggagagaaaaaaa
ttcacaatgtttacattcctctaacctttaaacagtactaaagtgcgcat
ttttacctaccatttttaccggcctctgcaatggagtaccgtgaagatag
cgagactcctaaacggtgtattatcACCCagaaaagtgcctttttttgtc
catatcttttaaatagattgtcccagccttatccctttttcagtaaagct
tcctataccttttgtccttcagaaaaaccaaaaatattggccttaattgc
ttgctttcagttcctgtagccagtagtgtgacccccgatatttctatttt
aatttgcgcgggttttttaatagagatgtcacatgactcaaatcctgcag
tcttattggactagagaaagcgaaagtgaaaacgcgcaatctgattggat
gaaaaaagaccgcgggagctggaacCGAATGaaattctctagaattctca
ttctaaaacaagatggcggcaagaaaagcacgtcttttgctttggacgaa
aggttgtaaattctggttgattttaaggttttatcttatcttatctcact
TTAATTaatagaggcttcttcaatgtttggggaaggtaagtctataaaag
ttatttgtttttcggtggaaaaaagtgtttaaaatgCATATAATGATATA
taataatgcatattgcataatgcataatagtattgtgtaatttacagaac
gattttatattttctaaaactctcctttgcagAGGCTAAAAACGCgagtt
tcttgtaaacattctaatcagagggatttccccccagacataatatttac
ttttcgaatccgaactaaagagaaaacattcgaatcataaaaacaaagga
ttttccgtcagcataaataataagaagatgcaacagatcagaaaggtttt
CCCCTTCTTCTGtctcaaaaaaaacataaacattcgaatgtaaaaagatt
cgaagtcttttttctttgatctagctttcgGATGAAgttctttaatttat
attggctggatattggcttatctaacaaaaagcattcacatggttaatgc
tttgtaagagggtaaacccgttgaaatttattagcaattgttgaaagaat
ctctgagaaaacccagaaagatcttgttttaaaaattacgttttcgagtt
agaaaaataataaacggaggagatattttcgtgttttttctacacgttct
gtaaaatacaactatgaaaatcaaaatggcgacaagcattttcagtgaat
cttggattttcttcatcatccaaaattcaatttacaactttctacccttt
attttctttagaaaatggtatatttgttttgttgaaagtattatctttca
aattctccttattatagcctctaaaattgacatttttcaaatattatgca
ttatgcattcaggcaatatgcattatgttttatgcattttgtacctgcca
gtttaaaaaagcattttttgtgctcaaggtttatttttcttcgcaaattt
ttgtcttcaatcttaaatagatgaacgagtatttgactgatggttatgat
tTTTTCACAGAACATATTAAAATATTCAGGAACTTAGatctttttacaga
atttcaaaaaatctgttagttctggagatatattgaaaagtttagacatg
ggtagtttgcgttcgtgtttcgcgttcccaaaccaaacgcacgtgccACG
CTCTACCGTAAGCTGTATAATCGTTTTAACATCTTTGTAAGGTTCAATTT
ATGTACAAAGGTTTACAGAGGCTCCTCAACAATGGAAAATGCTCCTCAAC
AAGTTTCTATTCTTTTAGGAGTCATCCAAACTCAAACTTGCCACGAAAAA
AGGTTGATTGAACGTTTTATTTACGAGCCACCCAACCCAACCCCCTTCCA
TTAACATTGTCATGGCAATAAACGTAATCTCAAGATATCAAACCTTTTAA
TCAGCTTCGTCGCTGTAAATATTCCATCGATGTTTTGTCAGACATCTTTA
TTTTTGTGGCAAGTTTGAGTTTGGACAGCTCCcctcttcttcttttcatt
ttattaggtatttttaataactttttattttcaatatcatgataatgtac
gttagcgtattatgtgatcacttaatagaactagaactagaaNtttcaat
atcatgataatgtacgttagcgtattatgtgatcacttaatagaactaga
actagaactagaactagaactgtTCTTAAGCGTTATAAGGGTTGAAAGAG
CAGCCATGAATCTAAAAGTTACTGTTTCCTTAGAAAAATTCACTGTTGCT
TTGTTTCTTAATATTTAATAACCAATTAATTAGGTAGTTGAGTACTGAGC
GATCTTTTCAAGTCATCtctatacaaaaaagaaaagcaaaaagaccTATC
GAATGACACCGCAGATTAACTTGTGTTTTGAATCTATAAAAGCAATTCCA
ATTAAAATACTAGAAATCTTCAAATCCCACGTCATCCAAAAACTTGAGAA
TACGCAAGCAAATTCATTTTGCAACGgtataaaaaatttaaacttgaaaa
tgttattaacaCACTTAGTAATAGGGGAGTTGCTCCTAATAGTTAATTGG
CATAATTAGTGAGATTAGATTTAGATATAATATTGATCGTTTTTCCGATT
TCACTTTTGTCTTCTTTGGAATTAAGATGGAGCAAGAAACgaagactttt
tataagaacaaacaaactCTTCAAGCATTTGCTTTGCGTTTGTTTTTGTA
CCAAAGCTGTGACGATCACATGTCAGAGATAAGCGAGCAATAGAAGAACA
CAGCTTCTTGCTTAATCTCCCTAATAATCTGCACAACACACTTGTATCAC
AGAACCCGATGGGACCTACCACAGGAAATTTCAGTCGTAAATTTCTGTTG
CAAAATATCTTAACGGGGAAGAAAATTTAGGGTTTTAAAAAATTGGTCAG
GGGAAAATTGCgacaaaagttaaaatttttataattttctccaaattttt
taagtttatccCATTTGGAAAGTTCTATCGGCTATCTGAACCCCTAAGAA
TGACTTAATTACTCAATATGGAGTTTTTTCTCTCCCCAATTGGAATTTTT
ATCCTCTCCCCATTGAGTAAAAAATTCATACTTAAAAATGCGTACTTAAA
AACGTGAAACGCACAGGAAACAAGGGGAAACGACAGAGAAACGGGTGGAA
TCAACATGGAAACGCCTAGGAAATGATTTGGAAACAAGTGGAAACGGAGG
GAAAGAAGGGGAAATGGGAGACAAAACTGAAAAGTATTGGAAACTATGTC
ATTTTCCGTCTGAAAATCGAAGGGATAGGTTGATTTTTCAATATTGGATA
GCTTTTTCAATTTAGAAGATCGTTACTTAAGACAATTACATTCAGCTGGA
GGTAGCTtcagttattttttcaaattctgggTGCAAATTATCCTGCAGGA
TAACAGGACCACAGCTCTAAATTCATTAATAATttatctttgaaaacttg
aagtCTGATACTTAGGGTAGGTAATTTCTTAGCTTTTTAAAATCACTCAT
GCACTTCATCTGTATCATAAGTTAAAGCATGAAATAAACGAATAAGAATT
TGTTGGGTACGAAATATTTCATTGactgttattttttcaaagccaTAAGA
AGACTGATATGGTTATTATACTGACGTTGTAACATCGACCACGCAGTATT
TTTTACTGTTTCTATCCGTTTCAAATTAAGTCCtataaccagacggtgtc
aatcgaacaacttcaaacaaaaatcacaatcgaaccaatcgaacataatc
gaacgcgatcgaataattgcgattcgattgtcgaacgtaatcgaatctca
atcgaacggccgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcggccgattcctgggtaatattcaattgtgttcgattgcgttcgagta
aggttagattggttcgatttgatagttgactatgttcgattggttcgatt
gattgttaaTTACATTGGATTAATCTTCGATTTCGTTcgattacgattat
gttcaatgagtttgattgcgattaaattaaattggatcactctgttagAG
CTTTTTAGCGTGGGCGGCCGAGCGCTTAAGTACCATACTAAAGCGAATAA
AATataatacaattgaatcaatcaaacgtaatcgaatacaatcgaacata
ATCAAAGCAATCGAACAGTAAATACTGgttaatattcgattgcgattcga
ttgcgttcgacaatcgaattgcaattattcgattgcgttcaattgcgttc
aattgatttggcgttcgattagttcgattgacaccgtcgtCTGGCTATAG
CGGCTTCGTCTCGAtcaattttgtgtttttgctTATCTATGGTCAATGGG
GTACAGGTACAGAAATATCAGACAACTGACATGCGAGAGGCTCTTATATT
AACTTCTTATATTCTAACCGTTTCCCCTAGTTTCCCTGTCGTTTCCTCTC
GTTTCCATGTCGTTTCCCCTAGTTTTCCTGTTGTTTCCTCTCGTTTCCAT
GtcgtttccactcgtttccTGGGCGTTTCACGTTTTAGTAAGTacgaaaa
aaatgtcgggggaagtgattaaaattttgagggggtgacgaaagtTTTCC
CCGATGAAATATTTTCCTGACATTTTATCACCTgaccaaaacttgtaccc
aatttttttatcctcgaccaaaacatttacccAAAATTTTATACCGCAAC
CAAAATTCGAATCTAATtattttacacctttatttaccaaaattagtgct
ttaaatgtcgaattacaagatccattttcgagctagtgaaggaaaccaat
TCTTCTAAACAGTTTAGTCAggtgaaagtgacgaatttgaaattttggtc
ggggaaagtgacgaaaatgcctctaggtgacgaaatttttcaccaacaaa
aaaataacccgactaaataaatctccaacatttttttccccgataaggta
cctcTCCACGATTTCACTAAACTGCGGAATCAAACAATCAAGTGTCAGGA
TTGATTATACTCTGTTTGGCTTTTTTAAAAGCCCCCGGTATTATGTTGAC
ATAAACAGATGATACACTACCCCAGACATTTACTTACACGCATGAACGTA
CATTTTTATATTTCACATATAATAGAACACCCCTTTTTCCGTGAcccagt
gaagttttgaaaccaccgGCGTGCGTGGCTATGGAAAAGTATAACTTCAC
CGGGTCTGAATATGAAATCTCAAAAACTCACTAAGTGAGAACTTTTGGTA
GGCAGAATATTGACTTAAAAGTAATATATATTTCAATAAAACATTTCCTT
ACGATTGATAATCAGAGTAAGACAATAAATAAGATTGATTTGGGTGAGAA
ATTTAAAGTAAGTTTGACCATCGTTGCTTTTAAAATTAGATCATtctatg
taattttttttctccggATTCTCTATCGGGCGGATCTGACTGGGTCACTG
ATATAGGggtgtaataaaagaatttggATTATATAAGCTCCTTGGATACA
GTCGGGTGCATAATTCTTAGCGCGTCGATGTTGAACAAATCATTTTCCTG
CAGTGTTTAGCCAAGCTGACAATTAAGGGTCGCGTCTACCTGAGAACGAT
CTTGTTTATCGGTCCATCCAGTGGCCCCCTCTAAAAGAcaacaaatgaat
aaaaatattttgtcataaAACTAATTTTGCGGTATATTCAAGGCTTTATT
ACATTTGACTGCTTATTGAGCTTATCTTCTGATAGAAAGCACAACCAACC
CCATCGAATATTAAGcttgtaaacaaatttacagcTCCTCGTAATCATGA
CTTACGGactacaggaaaaaattttttcttgttcAAAGGAAGTATTTTAT
GTGCAGGATTTTAATTTGGCTATACTTACTTAATCTAAATACGTTTGCgt
ttatcgacccagtgatattcatattggaagtttatcgtggcttggatcac
gagatttacgtttggctacttttcgagagattcttctcccattaTTGGGC
AATACTTGTACACTATTCTGCCCTTCCATGGTACCCCTCCTCTTTATGTC
ATTATTTACCACCTCGCGTCATTGATACTACCTAGAACGCAAATGTTAAT
GTCAAAAACCTGGAAATTAGAAGATGTAACTTTACTTTATCTTATGGTTA
AAAAAGAAGTCTTGCGCGCTTCTATCTTTGTTGGGTATTCAACTACAAAA
TGAACCTACCTTTTATCTTGTGACTTGCAACATTTCACTCCATTACTAGA
CTAAATTATGTATTTATCATTGAATCTTGTTTTTCTCACAGTGCCAGGTC
AATTTTGGAGGTAAAACAATGCTAGCAACAGAAAAAGAAAGCAGGTCAGT
TTTTTATCTATATACCATATATTAATGCGCTAATTtgtgtgtgtttacaa
catttttaaaaagtttNcatctatatattaatacgctaatTTTGTGTTTA
CaacattttaaaaaagttttcaaaaatctaacaaagctctacaaagacTC
CTCTTGGTGGAATTGAACCATCGACTTTTCGCGCCGTATGCAGATTTTCT
ACCACTAAATTAATCTTGGCAAATTGGCTGTTTGGTCAATAATGAAAACT
CAGAATTTCCAATTTCAACGCCTGTTTTCATTTGAATACTTAATTAAAAT
GATATCATCGCTATTCTCTACCATTTATACTCTTTTTAGTGTAATGCTGG
TTATCAAACAATATGAACAAGCTCTTCTACAtggactgaaaaaaaataaa
ttcctgGAAAAAATCAACACTCTCACTGAAACTTTCAGGTATTTgtgatt
gtgtttttttttgtttcgaatgaAGGTCCAATTATTAAGGTGGTACAGAG
AAACAGAAAAGGTGGTGCAGAAAACACAGACCTTATCAGGTTCTAGCTCA
ATTGAAGATAATAAATAAAAGCAAGCGACAAAATTTAAAGACTCTGGAAA
ATTAATGGCTGACTTGCAAACTCATGAATATAAAGTGCAagattatgttt
tgtttttttaggcAAGTGACTCAAAAAATGATTCCAGAAATTGATGATAA
TAGTAAGTTTGTTTGTAATATTTATAGATTTATAGATTTAGCTTGGGCTA
AATCATTAAGTAATGAAATACCTGTTTTTAAGGTTGAGCAAAGAGCAGCA
CTCATTAGAGGGCATGGCTTTTTTCAACAACAAGATGAGTAGCCTGGAGG
TCCATGCTacgatttcttattttatatactgatggtgaaatatatagcat
gatacgggctgagagtttgaatttcccagatcctaatgacggttgaaaac
acagccaatcaaattctgtttttctttcactggtcacactttcttagaga
aaacgcaatttccgaaatttggtttttattttagtaagcgAGGACAGCGC
CAAATTCGAATTTCTCACTGTAATTtctttgaggcagaaatctgcctcac
agctcatacccgtcctgtatacatcagattataaaaagtGCAGGACGGTC
TACAAGATGAGCGACTCGACTATCAAAAGTATTGTATATATGTTGTTTTG
TACGCTTAATTTTTCTTCTCAGATTATTGGGGTGTTGTGAAAGAAGTCTT
ATCTCCACTTGACGTCAAACACATTGAATCTTGTGAGGGAGTCACAACAG
ATACTGGAAAAGGTTTGGTTCAAATCATGTTTACTTTTATTAACAAATTT
TGAAACGAAAGaataaaagtcttttgaaaattaaaaaggtACAGTGTTGT
TTTGCTATTTTCAGCAGATTCTTCTCGCTGGCCTTGATCTTCTTTAAAAG
AGGAGGTAACATATCTGAATATTTTCTCCTTGGTTTCAATTTCAAAAGCA
GGattcaaaaaaagaagtttttggAGTGTAGCCTTTCCCTTTAGAAGAAT
ATAAACGCAGATTTGTAACAATTCGATTAAGAAGGTCGttactaaaattt
tgatataaatttttcCAAACGGTTTTACCCCATATCTATATTCTAGTAGT
AGTTACAAGTTCTTTTCTTAATTCCATTTGCAGCACGTGTTTGGCTAAGA
CAAGCTTTGAACGAGCACAGTTTGGAACGTCATCTCAACGCAATGTTAGC
CAATGGAAACTTGCTTAGGTACATGATGGTGATTATAATTGATTCAATTT
GCTCCTGAGATTATATAATTATcgaaacaaacaaaactttttacaaagtT
TGAGCAGTTTGAGCAAATTACCCAAAAAAATACCTGACCCAGAGTCCGTT
CtatataccttattacacgaaaataAGTAGACATTTTAATTaagaaattt
cgtgttaattaTTAAAACCCCTTtcattaaaaccagccgtggtgtccttg
aaaaagcaatagttcatgttaattttttgcgtgttaatttcaaggccgtt
gaatacttgcctagtaatattcgtgtaataaggtaatataTTAATGGGAT
CAAATTTGCTGTAAACTTCATTAAGGAGGTCTGTGTCGGAtactaaatct
ttttttataagaacaaagttgATTTTGACCGGTCCTAGCCTCTTACAACT
AGTCTTGCCCGCTCACGGACAGTCTTGACTGCTACTGGTCCATCTGTTTg
ttaagggctacttagactacacaatatattggtgagCAATATTCGACAGT
ATAGATTGtggaccgtaatgtacggagTAAACAGCAggtgctctattata
aaaagtaattttctttctgtaaacaatcctcctatatttttggaatattg
caaatcgagctgacaatttattgcggacacctttttaATAAACTGCCGGC
ATTCAGCGATATACTaacaatatattgcctgacaatatattgtgtagtgt
gtGTAGCCCTTTAGTAACATTGACATTGAAATGGTAATATTAGCGGCCAA
TCAAGGTCGGTCTAAGACATTTTCAATCGTTGCAATAGACGCTTTAAAAT
GGCTGTTTGATGACCAGGACTCCTAGTGaccttttggtaaatttttaccG
GGTATTTACCGGCCATTCAAAGAGACTGGTAcaattttcaggtactttaa
atcgcttgaAAAAGTCACACGAGTCACACGTGGTAAATTCATCATGTCAA
GGTTTGAGCTCCTTTTTAGTTCACTTCTCCTTTTGTTTAGGAACTACTAC
GAATCATGGGCACTCGTTTTGGATGAAGAAGTTGCAAGCAATCTACCAGT
CATGGCTAGAGGTCTGTTGTAACTTTGTTTTTAGATTGCAATAATCCCTC
AATATTACGATATTAACCAGAAATAACTGGACATGTTAATTTTACAGAGA
TATTGCAATTAAATTGCCTTTGTGtttaaaaagtatatttttgttatcgt
aattttttattttaaactcTAAAATTGCACTTAAAGGTTTTAGTTTCAAG
TCCTTGTTTGTTATATCAGACCGGTTTTTATATTGTGTTCGATTTTgtgc
tgaaaaaaaaaattgtttttcttttcctcctttctgacattCTATTGCTC
CACAACCGTGTCAACTCAATGTAAATGTGAAACTTTTTTAAAACtcttat
ttataaacaaaacctttaagtgtaAACAAAACAATACATATATTACGCTC
AGAACTTTGATTTAGCATTCTATAGACTCTGTTGAGGAGCAAGCTCTGCT
TCTCCGTTTACTACAAGCGATTATGCGACGCTCAACACTTAGTGTTTTGA
GCAGTCTGGTGACAACAgcagtctatgctcgcttacccGAGCCGCAATGA
CGAGTCCTTGGAAGGGAAAAAcacgtgtctgcggatagatGGTAGTGTAA
ACAATATAAgtataaaatataaaagagtATTTTTTAAGTAATATAAAAAT
accattctttttttttgcaggtttaagttcaattatttttgcTTTGGAAA
TTAATGGAGAAGATCTTAACAAGCCTTTTCAGGTAAAGCTATGTTTGAAA
ATCCACAGTTTACCAAAATTGAGCTAAAAGTGATTACTTAGATTAAAATT
AATAATATAGTAATGATAACAATAAACTTTACTATAAGATTATTGGCCAC
AATTAATACAGTTttaattcttgattttgtgtACATGGTTTTTCGATTGG
CCTAAgctatttctttttatttgtcaGATACagtataaaaattatttttc
ctagCTATATACTTATGTATTAAAGGTTAAGCGATGCTTCAAGAGTGCTC
TACAAAGTGAAGAAGCATGatacaatttcagaaaaaaaaacacaatttgt
aCAGCTGATGATTGTATTAACATGAAACTtgtgtatttttttctgaaaat
tgtagCAAATGTAGCAATAATTTTACTGCCGTGTTAAATTTTAACTGAGT
TTTTATACATagatttgaagaattttccatCGAAAGCTTCCTTATCTTAA
TCCTTTTCTTCGTTTTGTAGCCATTAGTATTCCCAACGACAGAGAAAACA
CACAGAAGGGTCAATTCAAATCCGCTTCCTGTTTTCGCTGGTTTTGACAC
AGGTTTGTCGAACTGCTTTTCTTTCCGTTAAAAGCTGTCAAGAGACTCAA
GTCTCCATAACATAATCATTAAATCGAAGaagttttctggtcccttcaAA
CAAACAGTACTGGTAACCCTTGTAAACCCAGTATCTATAACTGGTAACAA
ACCCGTGTAAACCCAGTCCTTATaactggaaaaaaaaattcagttcgCAG
TATGTGTTCGATAGACAGTGTGTGTTTGTAGAGACTATTAATTACTTACT
TTTCCTGGTCCCTTCAGGTAACAAACCTTTGTAAACCAGTCTTTATAACT
GGAAAAAAGTTCCCCAGTACATGTTCGAGCTCATGAAGCCTCCACTGTTG
CTTATTATTCTTTTAGAGCcaaatattgtcaaaaaaatcaagaagaagAA
GCGAAAAGTAGTAGAAGCAACTATAAACGATTTAGAAGAAATTCCAGACG
AACATTCATTATCTCAATCATATACTACCAATAGTTCACTAGAAAATCTT
atattacaaagtaaacaagacgACGATCGAATATTATCTCCACAATCTGG
AGCTAGCAGTGATAGAAGTTCAACTAAAGACTTTGAAACGCTTAGTGGGC
GTGCGTTAGAAACACGATCAGCTCCTGTGTCCCCTGTACCCTTATCTTAT
GGAGATAATACTAACACAGAGAATCTATCTTCTGCTGACAGTCCTACTCC
AAATGACAGAGTTTCCTcgcaaaaatcaatttcaaaagaCAATACGAAAA
GAAATTCATCAGACAATCTAACTAGTGAACCAACGgaagaaaatacaaaa
caaactgAAAATACAATCGCAAATATTAATAATACGACGAAATTACAGGA
CAAGCTAAAAGACACTCCTGTCTTACAAAATGACAAGACGAATGGACTTC
GTAAGACTGGGTTCGATAATGTTACAACTTCATCCAATAAAAACTTCTCA
AACGCGTTGACTTTAGAATCCAATTCAATCGACATTCTTCAAAAAGAGAA
AGATAACTTAATAGATGAGAATCCTCTTCCTAAAGATAACTTAACAACAA
ATCATTCTAACgaacctaaaaatatttcttatggACTTCAAAAATCTTCA
TCAGTTATTACTAAAGAAAACCACGGTGGTGCTAGATCAAGGACTTCTAA
ACTAATACCGGATGATAATATATTAACTGAAGCGAAAAATACAATTTCTA
AAACGCCATCTTATAACGACTCTACAACGGACAATACAAATGTATTAGAT
TTGAATGCACCACAAGTGAAAAGTACTCCTTTGGAGATTAACAATCAACT
GCATTGTGGAGCAATCATTGCTGGCGATTCTGAAGACGCTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038145XLOC_038145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060659-exon-scaffold_348-1491911889:499634..499734TCONS_00060659-exon-scaffold_348-1491911889:499634..499734Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:499634..499734TCONS_00060659-exon-scaffold_348-1510915933:499634..499734Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:499634..499734TCONS_00060659-exon-scaffold_348-1575043694:499634..499734Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1491911889:508845..508885TCONS_00060659-exon-scaffold_348-1491911889:508845..508885Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:508845..508885TCONS_00060659-exon-scaffold_348-1510915933:508845..508885Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:508845..508885TCONS_00060659-exon-scaffold_348-1575043694:508845..508885Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1491911889:509406..509495TCONS_00060659-exon-scaffold_348-1491911889:509406..509495Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:509406..509495TCONS_00060659-exon-scaffold_348-1510915933:509406..509495Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:509406..509495TCONS_00060659-exon-scaffold_348-1575043694:509406..509495Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1491911889:509867..509951TCONS_00060659-exon-scaffold_348-1491911889:509867..509951Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:509867..509951TCONS_00060659-exon-scaffold_348-1510915933:509867..509951Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:509867..509951TCONS_00060659-exon-scaffold_348-1575043694:509867..509951Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1491911889:510974..511044TCONS_00060659-exon-scaffold_348-1491911889:510974..511044Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:510974..511044TCONS_00060659-exon-scaffold_348-1510915933:510974..511044Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:510974..511044TCONS_00060659-exon-scaffold_348-1575043694:510974..511044Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1491911889:511704..511765TCONS_00060659-exon-scaffold_348-1491911889:511704..511765Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:511704..511765TCONS_00060659-exon-scaffold_348-1510915933:511704..511765Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:511704..511765TCONS_00060659-exon-scaffold_348-1575043694:511704..511765Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1491911889:512254..512335TCONS_00060659-exon-scaffold_348-1491911889:512254..512335Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:512254..512335TCONS_00060659-exon-scaffold_348-1510915933:512254..512335Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:512254..512335TCONS_00060659-exon-scaffold_348-1575043694:512254..512335Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1491911889:512700..513678TCONS_00060659-exon-scaffold_348-1491911889:512700..513678Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1510915933:512700..513678TCONS_00060659-exon-scaffold_348-1510915933:512700..513678Clytia hemisphaericaexon
TCONS_00060659-exon-scaffold_348-1575043694:512700..513678TCONS_00060659-exon-scaffold_348-1575043694:512700..513678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:499634..513678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07775	1.08496	0.408365	0	4.73733	2.29347	5.64638	3.07602	2.28785	2.55686	4.26414	1.90803	2.72175	0.731576	3.19436	3.07088	1.3886	3.22968	1.17639	2.21293	2.52424	1.52458	1.03824	2.00146	6.5592	3.19305	1.16889	2.16971	1.95278	1.5135
Blast
[Close]
BLAST of TCONS_00060659 vs. Swiss-Prot (Human)
Match: SNX29 (Sorting nexin-29 OS=Homo sapiens GN=SNX29 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 4.832e-25
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:  145 YWGVVKEVLSPLDVKHIESCEGVTTDTGKARVWLRQALNEHSLERHLNAMLANGNLLRNYYESWALVLDEEVASNLPVMARGLSSIIFALEINGEDLN--KPFQPLV 459
            +W  VKEVL+  +++   S   + +D G+ R WLR ALNEHSLER+L+ +LA+   L  +YE W+ V+DEE +S LP MA GL+SI+FA+ I+ +DLN    F P V
Sbjct:   86 FWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTV 192
The following BLAST results are available for this feature:
BLAST of TCONS_00060659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX294.832e-2547.66Sorting nexin-29 OS=Homo sapiens GN=SNX29 PE=1 SV=... [more]
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